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| Protein ID | Agabi119p4|668200 |
| Gene name | |
| Location | scaffold_06:1793785..1794544 |
| Strand | - |
| Gene length (bp) | 759 |
| Transcript length (bp) | 537 |
| Coding sequence length (bp) | 537 |
| Protein length (aa) | 179 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01423 | LSM | LSM domain | 1.6E-16 | 14 | 88 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10163|RSMB_SCHPO | Small nuclear ribonucleoprotein-associated protein B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smb1 PE=1 SV=1 | 10 | 175 | 4.0E-32 |
| sp|Q55A45|RSMB_DICDI | Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1 | 7 | 116 | 1.0E-30 |
| sp|Q9N1Q0|RSMB_MACEU | Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1 | 7 | 148 | 9.0E-30 |
| sp|P91918|RSMB_CAEEL | Probable small nuclear ribonucleoprotein-associated protein B OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1 | 6 | 97 | 1.0E-25 |
| sp|Q17QN3|RSMN_BOVIN | Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus GN=SNRPN PE=2 SV=1 | 7 | 93 | 2.0E-25 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10163|RSMB_SCHPO | Small nuclear ribonucleoprotein-associated protein B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smb1 PE=1 SV=1 | 10 | 175 | 4.0E-32 |
| sp|Q55A45|RSMB_DICDI | Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1 | 7 | 116 | 1.0E-30 |
| sp|Q9N1Q0|RSMB_MACEU | Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1 | 7 | 148 | 9.0E-30 |
| sp|P91918|RSMB_CAEEL | Probable small nuclear ribonucleoprotein-associated protein B OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1 | 6 | 97 | 1.0E-25 |
| sp|Q17QN3|RSMN_BOVIN | Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus GN=SNRPN PE=2 SV=1 | 7 | 93 | 2.0E-25 |
| sp|P27048|RSMB_MOUSE | Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus GN=Snrpb PE=1 SV=1 | 7 | 148 | 2.0E-25 |
| sp|Q58DW4|RSMB_BOVIN | Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus GN=SNRPB PE=2 SV=1 | 7 | 148 | 2.0E-25 |
| sp|P14678|RSMB_HUMAN | Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens GN=SNRPB PE=1 SV=2 | 7 | 148 | 2.0E-25 |
| sp|Q9TU67|RSMB_ERIEU | Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1 | 7 | 148 | 2.0E-25 |
| sp|Q9TU66|RSMB_MONDO | Small nuclear ribonucleoprotein-associated protein B' OS=Monodelphis domestica GN=SNRPB PE=2 SV=1 | 7 | 148 | 1.0E-24 |
| sp|Q05856|RSMB_DROME | Small nuclear ribonucleoprotein-associated protein B OS=Drosophila melanogaster GN=SmB PE=1 SV=1 | 7 | 172 | 1.0E-20 |
| sp|Q5R6I0|RSMN_PONAB | Small nuclear ribonucleoprotein-associated protein N OS=Pongo abelii GN=SNRPN PE=2 SV=1 | 7 | 141 | 2.0E-20 |
| sp|P63162|RSMN_HUMAN | Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens GN=SNRPN PE=1 SV=1 | 7 | 141 | 2.0E-20 |
| sp|Q60HD3|RSMN_MACFA | Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis GN=SNRPN PE=2 SV=1 | 7 | 141 | 2.0E-20 |
| sp|P63163|RSMN_MOUSE | Small nuclear ribonucleoprotein-associated protein N OS=Mus musculus GN=Snrpn PE=2 SV=1 | 7 | 141 | 2.0E-20 |
| sp|P63164|RSMN_RAT | Small nuclear ribonucleoprotein-associated protein N OS=Rattus norvegicus GN=Snrpn PE=2 SV=1 | 7 | 141 | 2.0E-20 |
| sp|P17136|RSMB_RAT | Small nuclear ribonucleoprotein-associated protein B (Fragment) OS=Rattus norvegicus GN=Snrpb PE=2 SV=1 | 20 | 148 | 9.0E-20 |
| sp|Q9PV94|RSMB_CHICK | Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus GN=SNRPB PE=2 SV=1 | 7 | 172 | 1.0E-19 |
| sp|P40018|RSMB_YEAST | Small nuclear ribonucleoprotein-associated protein B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMB1 PE=1 SV=1 | 8 | 92 | 6.0E-17 |
| sp|Q1ZXK3|LSM3_DICDI | Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1 | 15 | 87 | 9.0E-07 |
| sp|Q0W8R9|RUXX_METAR | Putative snRNP Sm-like protein OS=Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) GN=UNCMA_29510 PE=3 SV=1 | 26 | 87 | 2.0E-06 |
| sp|Q6GQ67|LMD1A_XENLA | N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis GN=naa38-a PE=3 SV=1 | 10 | 89 | 4.0E-06 |
| sp|A4IGZ4|LSMD1_XENTR | N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis GN=naa38 PE=3 SV=2 | 10 | 89 | 5.0E-06 |
| sp|Q9D2U5|LSMD1_MOUSE | N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus musculus GN=Naa38 PE=1 SV=1 | 10 | 89 | 6.0E-06 |
| sp|Q9BRA0|LSMD1_HUMAN | N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo sapiens GN=NAA38 PE=1 SV=1 | 10 | 89 | 1.0E-05 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|668200 MPPPKSKGGKMLALINWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTLGL VILRGETVVSISVEGPPPVVDEDKKANNLPGGPGRGMPAGRGMGMMPPMGAPPLARPPMPFAPPGMPGPPPGFRP PGFPQGMPFPPPPPGFGGPPPGFQPPPQ* |
| Coding | >Agabi119p4|668200 ATGCCTCCTCCAAAATCAAAAGGCGGAAAAATGCTCGCCCTCATCAACTGGCGGCTGAAAGTAACGATTAATGAT GGACGCGCATTGACTGGACAAATGCTTGCGTTTGACCGTCATATGAACCTCGTCCTCGCCGATTGCGAAGAATTC AGGCGAGTCCGTCCTAAAAAAAAGGCTGGCGAAGAAACAGCCCCAGAGCAAGAGATGAAACGCACACTTGGTCTG GTCATCCTGCGAGGCGAAACTGTCGTCAGCATAAGCGTAGAAGGTCCTCCTCCTGTTGTGGATGAAGATAAGAAA GCAAATAATCTCCCGGGTGGCCCTGGCCGTGGTATGCCTGCAGGACGCGGGATGGGCATGATGCCGCCGATGGGT GCTCCACCTCTCGCAAGGCCACCGATGCCGTTTGCCCCTCCTGGTATGCCTGGTCCTCCTCCAGGGTTCAGACCT CCTGGTTTCCCGCAGGGCATGCCGTTCCCCCCACCCCCTCCAGGCTTTGGTGGACCTCCTCCCGGGTTCCAACCT CCCCCACAATAG |
| Transcript | >Agabi119p4|668200 ATGCCTCCTCCAAAATCAAAAGGCGGAAAAATGCTCGCCCTCATCAACTGGCGGCTGAAAGTAACGATTAATGAT GGACGCGCATTGACTGGACAAATGCTTGCGTTTGACCGTCATATGAACCTCGTCCTCGCCGATTGCGAAGAATTC AGGCGAGTCCGTCCTAAAAAAAAGGCTGGCGAAGAAACAGCCCCAGAGCAAGAGATGAAACGCACACTTGGTCTG GTCATCCTGCGAGGCGAAACTGTCGTCAGCATAAGCGTAGAAGGTCCTCCTCCTGTTGTGGATGAAGATAAGAAA GCAAATAATCTCCCGGGTGGCCCTGGCCGTGGTATGCCTGCAGGACGCGGGATGGGCATGATGCCGCCGATGGGT GCTCCACCTCTCGCAAGGCCACCGATGCCGTTTGCCCCTCCTGGTATGCCTGGTCCTCCTCCAGGGTTCAGACCT CCTGGTTTCCCGCAGGGCATGCCGTTCCCCCCACCCCCTCCAGGCTTTGGTGGACCTCCTCCCGGGTTCCAACCT CCCCCACAATAG |
| Gene | >Agabi119p4|668200 ATGGTCAGTCTTTCTGTCCCCACCGCCCCCTCTGACCCCTCCTGATGTTTATCTCAACAGCCTCCTCCAAAATCA AAAGGCGGAAAAATGCTCGCCCTCATCAACTGGCGGCTGAAAGTAACGATTAATGATGGACGCGCATTGACTGGA CAAATGCTTGCGTTTGACCGTCATATGAACCTCGTCCTCGCCGATTGCGAAGAATTCAGGCGAGTCCGTCCTAAA AAAAAGGCTGGCGAAGAAACAGCCCCAGAGCAAGAGATGAAACGCACACTTGGTCTGGTCATCCTGCGAGGCGAA ACTGTCGTCAGCATAAGCGTAGAAGGTCCTCCTCCTGTTGTGGATGAAGATAAGAAAGCAAATAATGTGTGTCCC GATCACTTGATCCAATTACTGATCGTGTATTGATTCCATATCTCCAGCTCCCGGGTGGCCCTGGCCGTGGTATGC CTGCAGGACGCGGGATGGGCATGATGCCGCCGAGTATGTTTCCAGAATCAATTGAGAGCGACTGACGTTGACTTC TGTCCAATCTAGTGGGTGCTCCACCTCTCGCAAGGCCACCGATGCCGTTTGCCCCTCCTGGTATGCCTGGTCCTC CTCCAGGGTTCAGACCTCCTGGTTTCCCGCAGGGCATGCCGTTCCCCCCACCCCCTCCAGGCTTTGGTGGACCTC CTCCCGGGTATACACCTTCTCAATGCCCGCTCTTATCCTGAATACTTATTTTCTAAAATTAGGTTCCAACCTCCC CCACAATAG |