© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|667700 |
| Gene name | |
| Location | scaffold_06:1618541..1619345 |
| Strand | - |
| Gene length (bp) | 804 |
| Transcript length (bp) | 708 |
| Coding sequence length (bp) | 708 |
| Protein length (aa) | 236 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01885 | PTS_2-RNA | RNA 2'-phosphotransferase, Tpt1 / KptA family | 2.3E-10 | 65 | 207 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14045|TPT1_SCHPO | Putative tRNA 2'-phosphotransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.12c PE=3 SV=2 | 42 | 222 | 4.0E-11 |
| sp|Q3ZBM7|TRPT1_BOVIN | tRNA 2'-phosphotransferase 1 OS=Bos taurus GN=TRPT1 PE=2 SV=3 | 48 | 221 | 1.0E-08 |
| sp|Q8K3A2|TRPT1_MOUSE | tRNA 2'-phosphotransferase 1 OS=Mus musculus GN=Trpt1 PE=2 SV=2 | 20 | 221 | 3.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016740 | transferase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|667700 MPPLPVLPRARPSKAHLKFRNHAWRQPWNGTQIRWALNTLRHLRHSPLLPPDAWLPLADFATQDDFHTVLALTDN DRARRFETELSDPATPYIRAREGHSVPDVRLSNVRVRFPSAIPSLIYATAPANWPAIERDGIRPRLPPLLVPNPS NPNFIYFAHYMANLSPPTLSHLPSNALQLHITINVPAAMKAGIKFYATNTNQIISTGFINSTIPTQFFKDVSVVS VKCERLTTVY* |
| Coding | >Agabi119p4|667700 ATGCCCCCTCTTCCAGTGCTGCCCCGCGCTCGCCCTTCCAAGGCCCATCTCAAATTCCGCAACCACGCCTGGCGC CAGCCCTGGAATGGCACCCAGATACGCTGGGCCCTCAACACCCTCCGCCATCTCCGCCACTCCCCCCTCCTTCCC CCCGATGCTTGGCTTCCCCTCGCCGACTTTGCCACCCAGGACGACTTTCACACCGTCCTTGCCCTGACTGACAAC GACCGCGCCCGCCGCTTCGAGACCGAGTTGTCCGATCCAGCGACACCCTACATCCGCGCACGAGAAGGCCACTCT GTTCCAGATGTTCGCCTCTCCAATGTTCGAGTCCGCTTTCCCTCTGCCATCCCCTCTCTCATCTACGCCACCGCA CCCGCAAACTGGCCAGCCATCGAGCGCGACGGCATCCGTCCACGGCTTCCACCCCTCCTCGTCCCCAATCCCTCA AATCCAAATTTCATATATTTCGCACACTACATGGCCAATCTCTCCCCCCCAACCCTCTCCCACCTCCCCAGCAAC GCTCTACAACTCCACATCACCATCAATGTCCCCGCCGCTATGAAAGCAGGTATCAAGTTCTATGCTACAAACACC AACCAGATCATCTCCACCGGCTTCATCAATTCAACCATCCCCACTCAATTCTTCAAGGACGTCTCCGTCGTCTCC GTCAAGTGCGAGCGCCTCACCACAGTTTATTGA |
| Transcript | >Agabi119p4|667700 ATGCCCCCTCTTCCAGTGCTGCCCCGCGCTCGCCCTTCCAAGGCCCATCTCAAATTCCGCAACCACGCCTGGCGC CAGCCCTGGAATGGCACCCAGATACGCTGGGCCCTCAACACCCTCCGCCATCTCCGCCACTCCCCCCTCCTTCCC CCCGATGCTTGGCTTCCCCTCGCCGACTTTGCCACCCAGGACGACTTTCACACCGTCCTTGCCCTGACTGACAAC GACCGCGCCCGCCGCTTCGAGACCGAGTTGTCCGATCCAGCGACACCCTACATCCGCGCACGAGAAGGCCACTCT GTTCCAGATGTTCGCCTCTCCAATGTTCGAGTCCGCTTTCCCTCTGCCATCCCCTCTCTCATCTACGCCACCGCA CCCGCAAACTGGCCAGCCATCGAGCGCGACGGCATCCGTCCACGGCTTCCACCCCTCCTCGTCCCCAATCCCTCA AATCCAAATTTCATATATTTCGCACACTACATGGCCAATCTCTCCCCCCCAACCCTCTCCCACCTCCCCAGCAAC GCTCTACAACTCCACATCACCATCAATGTCCCCGCCGCTATGAAAGCAGGTATCAAGTTCTATGCTACAAACACC AACCAGATCATCTCCACCGGCTTCATCAATTCAACCATCCCCACTCAATTCTTCAAGGACGTCTCCGTCGTCTCC GTCAAGTGCGAGCGCCTCACCACAGTTTATTGA |
| Gene | >Agabi119p4|667700 ATGCCCCCTCTTCCAGTGCTGCCCCGCGCTCGCCCTTCCAAGGCCCATCTCAAATTCCGCAACCACGCCTGGCGC CAGCCCTGGAATGGCACCCAGATACGCTGGGCCCTCAACACCCTCCGCCATCTCCGCCACTCCCCCCTCCTTCCC CCCGATGCTTGGCTTCCCCTCGCCGACTTTGCCACCCAGGACGACTTTCACACCGTCCTTGCCCTGACTGACAAC GACCGCGCCCGCCGCTTCGAGACCGAGTTGTCCGATCCAGCGACACCCTACATCCGCGCACGAGAAGGCCACTCT GTTCCAGTAGGTTCATGTCTTCACTCTCGCTTTCACTTCTCACGCGTTTCACAGGATGTTCGCCTCTCCAATGTT CGAGTCCGCTTTCCCTCTGCCATCCCCTCTCTCATCTACGCCACCGCACCCGCAAACTGGCCAGCCATCGGCACG TCGCCTCTTCTCTCTCGCTACCTCCCTATTTACTTTTTTATAGAGCGCGACGGCATCCGTCCACGGCTTCCACCC CTCCTCGTCCCCAATCCCTCAAATCCAAATTTCATATATTTCGCACACTACATGGCCAATCTCTCCCCCCCAACC CTCTCCCACCTCCCCAGCAACGCTCTACAACTCCACATCACCATCAATGTCCCCGCCGCTATGAAAGCAGGTATC AAGTTCTATGCTACAAACACCAACCAGATCATCTCCACCGGCTTCATCAATTCAACCATCCCCACTCAATTCTTC AAGGACGTCTCCGTCGTCTCCGTCAAGTGCGAGCGCCTCACCACAGTTTATTGA |