Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|667450
Gene name
Locationscaffold_06:1606635..1608150
Strand+
Gene length (bp)1515
Transcript length (bp)1515
Coding sequence length (bp)1515
Protein length (aa) 505

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF17921 Integrase_H2C2 Integrase zinc binding domain 2.1E-14 111 166

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 89 339 3.0E-13
sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 89 339 3.0E-13
sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 109 339 7.0E-13
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 114 339 1.0E-12
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 110 434 3.0E-12
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P23074|POL_SFV1 Pro-Pol polyprotein OS=Simian foamy virus type 1 GN=pol PE=1 SV=3 89 339 3.0E-13
sp|P27401|POL_SFV3L Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) GN=pol PE=3 SV=2 89 339 3.0E-13
sp|P14350|POL_FOAMV Pro-Pol polyprotein OS=Human spumaretrovirus GN=pol PE=1 SV=2 109 339 7.0E-13
sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1 114 339 1.0E-12
sp|P10394|POL4_DROME Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1 110 434 3.0E-12
sp|Q87040|POL_SFVCP Pro-Pol polyprotein OS=Simian foamy virus (isolate chimpanzee) GN=pol PE=3 SV=1 109 339 4.0E-12
sp|Q4R6I1|GIN1_MACFA Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis GN=GIN1 PE=2 SV=1 82 459 4.0E-11
sp|Q5RBK0|GIN1_PONAB Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii GN=GIN1 PE=2 SV=1 84 459 5.0E-10
sp|Q9NXP7|GIN1_HUMAN Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens GN=GIN1 PE=2 SV=3 82 459 8.0E-10
sp|Q8K259|GIN1_MOUSE Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus GN=Gin1 PE=2 SV=2 82 328 5.0E-08
sp|Q09575|YRD6_CAEEL Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=3 SV=1 109 340 7.0E-07
sp|P31795|POL_MLVRK Pol polyprotein (Fragment) OS=Radiation murine leukemia virus (strain Kaplan) GN=pol PE=3 SV=1 120 330 2.0E-06
sp|Q66H30|GIN1_RAT Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus GN=GIN1 PE=2 SV=1 82 328 2.0E-06
sp|P11227|POL_MLVRD Pol polyprotein OS=Radiation murine leukemia virus GN=pol PE=3 SV=1 120 330 3.0E-06
sp|P10272|POL_BAEVM Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1 109 295 5.0E-06
sp|Q9TTC1|POL_KORV Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1 120 295 5.0E-06
sp|P31792|POL_FENV1 Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 GN=pol PE=3 SV=1 109 295 6.0E-06
sp|P04026|POL_IPHA Putative Pol polyprotein OS=Hamster intracisternal a-particle H18 GN=pol PE=3 SV=1 129 310 8.0E-06
[Show less]

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 13 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|667450
MWSVDGRTRDGREGFESWVLMMGEGEWNDEDIIIQSESEGGGHMMLPPDETEKEKEKELEMIRKFLKQLEMPENL
GPKAHTSFLKRASQYFVKGNKLWRKAYSGRHQIVVVDRKERFTLLIQSHDKLGHKGFFAMRQTLVNCFWWPCIDN
DIRWFISTCHQCQIRSTEHVVIPPTVQIPAPLFQKAYIDTMHMPPSHRHKYIVQARCSLTGWPEWRPLSQETGCT
LGSFIFEEILCQWGGLEEIVTDNGTPFIAALDWLAKKYHIRHIYILAYNSQANSAVETTHRTVREALVKVWKGEI
RKWYTHAPYIFWADRVTTHAATGHTLYYMAHGVELLLPFDITEATYLLPPITRKLSQSELLASRSQALEKCDENL
AMMHQRVVEARQRSVKAFEKRNINKIKDYNFLPGELVSVLNKRIEPDVGRKCRPRYFGPMVVVCRHGSGAYTLAE
VTGVVMNLPTYRKDVIMPTHFHLPGYTLVRLRFSHHSFSCHFLFHVTCYIFSFS*
Coding >Agabi119p4|667450
ATGTGGAGTGTGGATGGCCGGACTAGAGATGGCAGGGAAGGGTTTGAGAGTTGGGTATTGATGATGGGAGAAGGA
GAGTGGAATGACGAGGACATCATTATCCAAAGTGAGAGTGAGGGAGGAGGTCACATGATGCTGCCACCGGATGAA
ACGGAGAAGGAGAAGGAAAAGGAGCTGGAAATGATAAGGAAGTTCCTCAAACAGTTGGAAATGCCGGAAAACCTC
GGCCCGAAAGCTCACACATCATTCCTGAAACGAGCTAGTCAGTATTTTGTCAAAGGAAATAAGCTATGGAGGAAA
GCATACAGTGGCCGACACCAAATCGTCGTTGTGGATAGGAAAGAGAGGTTCACCTTGTTGATTCAGTCACATGAC
AAACTAGGTCACAAAGGCTTCTTTGCAATGCGTCAAACACTTGTCAATTGTTTCTGGTGGCCCTGCATTGACAAT
GACATCCGCTGGTTCATTTCAACCTGTCATCAGTGTCAGATACGGTCAACGGAACATGTTGTAATACCACCTACC
GTTCAGATCCCAGCCCCACTTTTCCAGAAAGCATATATCGACACTATGCACATGCCACCATCGCATAGGCATAAA
TACATTGTACAAGCTCGTTGCAGTCTCACAGGATGGCCAGAGTGGCGTCCTCTCTCTCAAGAAACCGGTTGTACT
CTGGGATCATTCATTTTTGAGGAGATCTTGTGTCAATGGGGCGGACTTGAGGAGATCGTAACCGACAACGGCACT
CCCTTCATTGCAGCTCTGGACTGGCTAGCGAAAAAGTATCACATTCGACACATTTACATCTTGGCTTATAACTCG
CAAGCAAATAGTGCTGTGGAAACGACGCACAGGACAGTTAGAGAGGCTCTAGTCAAGGTTTGGAAAGGAGAAATT
CGGAAATGGTATACACACGCACCATATATCTTCTGGGCAGACCGAGTTACCACACACGCAGCCACGGGGCACACT
CTGTACTACATGGCCCATGGAGTCGAGCTGCTCCTCCCCTTTGATATCACCGAGGCGACATATCTTCTCCCCCCT
ATCACTCGAAAACTCTCGCAGTCGGAACTCCTGGCTTCTAGGTCACAGGCACTTGAAAAATGTGACGAGAATCTG
GCTATGATGCATCAACGTGTCGTAGAGGCTCGGCAACGATCGGTGAAGGCCTTTGAGAAAAGGAATATCAATAAG
ATCAAAGATTATAATTTCCTACCTGGAGAGCTCGTATCCGTTCTCAACAAGCGCATCGAGCCAGACGTCGGGCGT
AAATGTCGGCCCCGTTATTTTGGTCCCATGGTCGTTGTTTGTCGTCATGGTAGCGGAGCCTATACTCTGGCTGAG
GTCACAGGTGTTGTTATGAATTTACCAACCTATAGGAAGGACGTCATTATGCCTACTCACTTCCATTTACCTGGA
TATACTCTGGTCCGCCTTCGCTTCTCCCATCATTCATTCTCTTGTCATTTCCTCTTTCATGTTACCTGTTATATC
TTTTCCTTCTCATGA
Transcript >Agabi119p4|667450
ATGTGGAGTGTGGATGGCCGGACTAGAGATGGCAGGGAAGGGTTTGAGAGTTGGGTATTGATGATGGGAGAAGGA
GAGTGGAATGACGAGGACATCATTATCCAAAGTGAGAGTGAGGGAGGAGGTCACATGATGCTGCCACCGGATGAA
ACGGAGAAGGAGAAGGAAAAGGAGCTGGAAATGATAAGGAAGTTCCTCAAACAGTTGGAAATGCCGGAAAACCTC
GGCCCGAAAGCTCACACATCATTCCTGAAACGAGCTAGTCAGTATTTTGTCAAAGGAAATAAGCTATGGAGGAAA
GCATACAGTGGCCGACACCAAATCGTCGTTGTGGATAGGAAAGAGAGGTTCACCTTGTTGATTCAGTCACATGAC
AAACTAGGTCACAAAGGCTTCTTTGCAATGCGTCAAACACTTGTCAATTGTTTCTGGTGGCCCTGCATTGACAAT
GACATCCGCTGGTTCATTTCAACCTGTCATCAGTGTCAGATACGGTCAACGGAACATGTTGTAATACCACCTACC
GTTCAGATCCCAGCCCCACTTTTCCAGAAAGCATATATCGACACTATGCACATGCCACCATCGCATAGGCATAAA
TACATTGTACAAGCTCGTTGCAGTCTCACAGGATGGCCAGAGTGGCGTCCTCTCTCTCAAGAAACCGGTTGTACT
CTGGGATCATTCATTTTTGAGGAGATCTTGTGTCAATGGGGCGGACTTGAGGAGATCGTAACCGACAACGGCACT
CCCTTCATTGCAGCTCTGGACTGGCTAGCGAAAAAGTATCACATTCGACACATTTACATCTTGGCTTATAACTCG
CAAGCAAATAGTGCTGTGGAAACGACGCACAGGACAGTTAGAGAGGCTCTAGTCAAGGTTTGGAAAGGAGAAATT
CGGAAATGGTATACACACGCACCATATATCTTCTGGGCAGACCGAGTTACCACACACGCAGCCACGGGGCACACT
CTGTACTACATGGCCCATGGAGTCGAGCTGCTCCTCCCCTTTGATATCACCGAGGCGACATATCTTCTCCCCCCT
ATCACTCGAAAACTCTCGCAGTCGGAACTCCTGGCTTCTAGGTCACAGGCACTTGAAAAATGTGACGAGAATCTG
GCTATGATGCATCAACGTGTCGTAGAGGCTCGGCAACGATCGGTGAAGGCCTTTGAGAAAAGGAATATCAATAAG
ATCAAAGATTATAATTTCCTACCTGGAGAGCTCGTATCCGTTCTCAACAAGCGCATCGAGCCAGACGTCGGGCGT
AAATGTCGGCCCCGTTATTTTGGTCCCATGGTCGTTGTTTGTCGTCATGGTAGCGGAGCCTATACTCTGGCTGAG
GTCACAGGTGTTGTTATGAATTTACCAACCTATAGGAAGGACGTCATTATGCCTACTCACTTCCATTTACCTGGA
TATACTCTGGTCCGCCTTCGCTTCTCCCATCATTCATTCTCTTGTCATTTCCTCTTTCATGTTACCTGTTATATC
TTTTCCTTCTCATGA
Gene >Agabi119p4|667450
ATGTGGAGTGTGGATGGCCGGACTAGAGATGGCAGGGAAGGGTTTGAGAGTTGGGTATTGATGATGGGAGAAGGA
GAGTGGAATGACGAGGACATCATTATCCAAAGTGAGAGTGAGGGAGGAGGTCACATGATGCTGCCACCGGATGAA
ACGGAGAAGGAGAAGGAAAAGGAGCTGGAAATGATAAGGAAGTTCCTCAAACAGTTGGAAATGCCGGAAAACCTC
GGCCCGAAAGCTCACACATCATTCCTGAAACGAGCTAGTCAGTATTTTGTCAAAGGAAATAAGCTATGGAGGAAA
GCATACAGTGGCCGACACCAAATCGTCGTTGTGGATAGGAAAGAGAGGTTCACCTTGTTGATTCAGTCACATGAC
AAACTAGGTCACAAAGGCTTCTTTGCAATGCGTCAAACACTTGTCAATTGTTTCTGGTGGCCCTGCATTGACAAT
GACATCCGCTGGTTCATTTCAACCTGTCATCAGTGTCAGATACGGTCAACGGAACATGTTGTAATACCACCTACC
GTTCAGATCCCAGCCCCACTTTTCCAGAAAGCATATATCGACACTATGCACATGCCACCATCGCATAGGCATAAA
TACATTGTACAAGCTCGTTGCAGTCTCACAGGATGGCCAGAGTGGCGTCCTCTCTCTCAAGAAACCGGTTGTACT
CTGGGATCATTCATTTTTGAGGAGATCTTGTGTCAATGGGGCGGACTTGAGGAGATCGTAACCGACAACGGCACT
CCCTTCATTGCAGCTCTGGACTGGCTAGCGAAAAAGTATCACATTCGACACATTTACATCTTGGCTTATAACTCG
CAAGCAAATAGTGCTGTGGAAACGACGCACAGGACAGTTAGAGAGGCTCTAGTCAAGGTTTGGAAAGGAGAAATT
CGGAAATGGTATACACACGCACCATATATCTTCTGGGCAGACCGAGTTACCACACACGCAGCCACGGGGCACACT
CTGTACTACATGGCCCATGGAGTCGAGCTGCTCCTCCCCTTTGATATCACCGAGGCGACATATCTTCTCCCCCCT
ATCACTCGAAAACTCTCGCAGTCGGAACTCCTGGCTTCTAGGTCACAGGCACTTGAAAAATGTGACGAGAATCTG
GCTATGATGCATCAACGTGTCGTAGAGGCTCGGCAACGATCGGTGAAGGCCTTTGAGAAAAGGAATATCAATAAG
ATCAAAGATTATAATTTCCTACCTGGAGAGCTCGTATCCGTTCTCAACAAGCGCATCGAGCCAGACGTCGGGCGT
AAATGTCGGCCCCGTTATTTTGGTCCCATGGTCGTTGTTTGTCGTCATGGTAGCGGAGCCTATACTCTGGCTGAG
GTCACAGGTGTTGTTATGAATTTACCAACCTATAGGAAGGACGTCATTATGCCTACTCACTTCCATTTACCTGGA
TATACTCTGGTCCGCCTTCGCTTCTCCCATCATTCATTCTCTTGTCATTTCCTCTTTCATGTTACCTGTTATATC
TTTTCCTTCTCATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail