Protein ID | Agabi119p4|663400 |
Gene name | |
Location | scaffold_06:1209881..1210544 |
Strand | + |
Gene length (bp) | 663 |
Transcript length (bp) | 495 |
Coding sequence length (bp) | 495 |
Protein length (aa) | 165 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12718 | Tropomyosin_1 | Tropomyosin like | 2.2E-43 | 10 | 151 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P40414|TPM2_YEAST | Tropomyosin-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPM2 PE=1 SV=1 | 4 | 164 | 2.0E-22 |
sp|P17536|TPM1_YEAST | Tropomyosin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPM1 PE=1 SV=1 | 4 | 164 | 7.0E-22 |
sp|Q02088|TPM_SCHPO | Tropomyosin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc8 PE=3 SV=1 | 4 | 164 | 7.0E-21 |
sp|A1KYZ2|TPM_PENMO | Tropomyosin OS=Penaeus monodon GN=TM1 PE=1 SV=1 | 4 | 130 | 1.0E-08 |
sp|P58775|TPM2_RAT | Tropomyosin beta chain OS=Rattus norvegicus GN=Tpm2 PE=1 SV=1 | 4 | 130 | 3.0E-08 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P40414|TPM2_YEAST | Tropomyosin-2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPM2 PE=1 SV=1 | 4 | 164 | 2.0E-22 |
sp|P17536|TPM1_YEAST | Tropomyosin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPM1 PE=1 SV=1 | 4 | 164 | 7.0E-22 |
sp|Q02088|TPM_SCHPO | Tropomyosin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cdc8 PE=3 SV=1 | 4 | 164 | 7.0E-21 |
sp|A1KYZ2|TPM_PENMO | Tropomyosin OS=Penaeus monodon GN=TM1 PE=1 SV=1 | 4 | 130 | 1.0E-08 |
sp|P58775|TPM2_RAT | Tropomyosin beta chain OS=Rattus norvegicus GN=Tpm2 PE=1 SV=1 | 4 | 130 | 3.0E-08 |
sp|P58776|TPM2_RABIT | Tropomyosin beta chain OS=Oryctolagus cuniculus GN=TPM2 PE=1 SV=1 | 4 | 130 | 3.0E-08 |
sp|P58774|TPM2_MOUSE | Tropomyosin beta chain OS=Mus musculus GN=Tpm2 PE=1 SV=1 | 4 | 130 | 3.0E-08 |
sp|Q5KR48|TPM2_BOVIN | Tropomyosin beta chain OS=Bos taurus GN=TPM2 PE=2 SV=1 | 4 | 130 | 3.0E-08 |
sp|P86704|TPM_PANBO | Tropomyosin OS=Pandalus borealis GN=TM1 PE=1 SV=1 | 4 | 130 | 9.0E-08 |
sp|P07951|TPM2_HUMAN | Tropomyosin beta chain OS=Homo sapiens GN=TPM2 PE=1 SV=1 | 4 | 130 | 2.0E-07 |
sp|Q01173|TPM1_XENLA | Tropomyosin alpha-1 chain OS=Xenopus laevis GN=tpm1 PE=2 SV=1 | 4 | 130 | 2.0E-07 |
sp|Q5KR49|TPM1_BOVIN | Tropomyosin alpha-1 chain OS=Bos taurus GN=TPM1 PE=2 SV=1 | 4 | 130 | 2.0E-07 |
sp|P04692|TPM1_RAT | Tropomyosin alpha-1 chain OS=Rattus norvegicus GN=Tpm1 PE=1 SV=3 | 4 | 130 | 4.0E-07 |
sp|P58772|TPM1_RABIT | Tropomyosin alpha-1 chain OS=Oryctolagus cuniculus GN=TPM1 PE=1 SV=1 | 4 | 130 | 4.0E-07 |
sp|P58771|TPM1_MOUSE | Tropomyosin alpha-1 chain OS=Mus musculus GN=Tpm1 PE=1 SV=1 | 4 | 130 | 4.0E-07 |
sp|P42639|TPM1_PIG | Tropomyosin alpha-1 chain OS=Sus scrofa GN=TPM1 PE=1 SV=2 | 4 | 130 | 5.0E-07 |
sp|P09493|TPM1_HUMAN | Tropomyosin alpha-1 chain OS=Homo sapiens GN=TPM1 PE=1 SV=2 | 4 | 130 | 5.0E-07 |
sp|Q8WR63|TPM_TRIPS | Tropomyosin OS=Trichinella pseudospiralis PE=2 SV=1 | 4 | 124 | 8.0E-07 |
sp|Q9N2R3|TPM_CHAFE | Tropomyosin (Fragment) OS=Charybdis feriata PE=1 SV=1 | 4 | 130 | 1.0E-06 |
sp|P19352|TPM2_CHICK | Tropomyosin beta chain OS=Gallus gallus GN=TPM2 PE=1 SV=1 | 4 | 130 | 1.0E-06 |
sp|P58773|TPM1_COTJA | Tropomyosin alpha-1 chain OS=Coturnix coturnix japonica GN=TPM1 PE=2 SV=1 | 4 | 130 | 2.0E-06 |
sp|P04268|TPM1_CHICK | Tropomyosin alpha-1 chain OS=Gallus gallus GN=TPM1 PE=1 SV=2 | 4 | 130 | 2.0E-06 |
sp|O44119|TPM_HOMAM | Tropomyosin OS=Homarus americanus GN=TM1 PE=1 SV=1 | 4 | 130 | 2.0E-06 |
sp|Q9NFZ4|TPM_LEPDS | Tropomyosin OS=Lepidoglyphus destructor PE=1 SV=1 | 4 | 130 | 2.0E-06 |
sp|A2V735|TPM_CHIOP | Tropomyosin OS=Chionoecetes opilio GN=TM1 PE=1 SV=1 | 4 | 130 | 3.0E-06 |
sp|P13105|TPM1_RANTE | Tropomyosin alpha-1 chain OS=Rana temporaria GN=tpm1 PE=2 SV=1 | 4 | 130 | 3.0E-06 |
sp|P13104|TPM1_DANRE | Tropomyosin alpha-1 chain OS=Danio rerio GN=tpma PE=2 SV=1 | 4 | 130 | 4.0E-06 |
sp|Q23939|TPM_DERFA | Tropomyosin OS=Dermatophagoides farinae PE=1 SV=2 | 4 | 130 | 4.0E-06 |
sp|Q9NDS0|TPM_BRABE | Tropomyosin OS=Branchiostoma belcheri GN=TPM PE=2 SV=1 | 4 | 141 | 5.0E-06 |
sp|O18416|TPM_DERPT | Tropomyosin OS=Dermatophagoides pteronyssinus PE=1 SV=1 | 4 | 130 | 6.0E-06 |
sp|Q07068|TPM1_CIOIN | Tropomyosin, smooth muscle/fibroblast CTM1 OS=Ciona intestinalis GN=CTM1 PE=2 SV=1 | 4 | 124 | 9.0E-06 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 40 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Agabi119p4|663400 MAAMDRIREKLNGLRVEADNAIARAEESEAKNKKLEQELLHKEQEVKSLEHRLGLAESSLDKSEATVADLKKVVS NSEGTGSTNDALTRKVELLEEELDASEKNLKETVEKLRQVDIKAEQLERQVQHLEQEKDMVEKKYEAEAEKYKKA KADLDELVVSMEGL* |
Coding | >Agabi119p4|663400 ATGGCCGCCATGGACAGAATCAGAGAGAAACTCAATGGCCTTCGCGTCGAAGCCGATAACGCGATCGCGCGCGCT GAAGAGTCCGAAGCGAAGAACAAGAAACTGGAACAAGAACTTCTTCACAAAGAACAAGAAGTAAAGTCCCTCGAG CACCGTCTCGGACTCGCAGAATCTTCTCTCGACAAGAGCGAGGCCACCGTTGCCGATTTGAAGAAAGTAGTTTCC AATTCCGAAGGCACAGGATCAACGAACGATGCCCTCACGAGAAAGGTTGAACTCTTGGAAGAAGAACTTGATGCT TCCGAGAAGAACCTCAAGGAAACCGTTGAAAAGTTAAGACAAGTGGATATCAAGGCTGAACAACTAGAGCGACAA GTGCAACATCTAGAGCAGGAGAAGGATATGGTAGAGAAGAAATACGAGGCGGAGGCAGAGAAATACAAGAAGGCC AAGGCTGATCTTGATGAACTTGTTGTTTCTATGGAGGGCCTTTAA |
Transcript | >Agabi119p4|663400 ATGGCCGCCATGGACAGAATCAGAGAGAAACTCAATGGCCTTCGCGTCGAAGCCGATAACGCGATCGCGCGCGCT GAAGAGTCCGAAGCGAAGAACAAGAAACTGGAACAAGAACTTCTTCACAAAGAACAAGAAGTAAAGTCCCTCGAG CACCGTCTCGGACTCGCAGAATCTTCTCTCGACAAGAGCGAGGCCACCGTTGCCGATTTGAAGAAAGTAGTTTCC AATTCCGAAGGCACAGGATCAACGAACGATGCCCTCACGAGAAAGGTTGAACTCTTGGAAGAAGAACTTGATGCT TCCGAGAAGAACCTCAAGGAAACCGTTGAAAAGTTAAGACAAGTGGATATCAAGGCTGAACAACTAGAGCGACAA GTGCAACATCTAGAGCAGGAGAAGGATATGGTAGAGAAGAAATACGAGGCGGAGGCAGAGAAATACAAGAAGGCC AAGGCTGATCTTGATGAACTTGTTGTTTCTATGGAGGGCCTTTAA |
Gene | >Agabi119p4|663400 ATGGCCGCCATGGACAGAATCAGAGAGGTAATGCGTCTACCCATCCTCTTTTTTTTCGCTGTCCCTTCTGAGGCT CCAATTACTTAGAAACTCAATGGCCTTCGCGTCGAAGCCGATAACGCGATCGCGCGCGCTGAAGAGTCCGAAGCG AAGAACAAGAAACTGGAACAAGAACTTCTTCACAAAGAACAAGAAGTAAAGTCCCTCGAGCACCGTCTCGGACTC GCAGAATCTTCTCTCGACAAGAGCGAGGCCACCGTTGCCGATTTGAAGAAAGTAGTTTCCAATTCCGAAGGCACA GGATCAACGAACGATGCCCTCACGAGAAAGGTTGAACTCTTGGAAGAAGAACTTGATGCTTCCGAGAAGAACCTC AAGGAAACCGTTGAAAAGTACGATTTCTCTCCACTTACGTGTCCTCGAATGCTAACCGCGCCTCTCCCAGGTTAA GACAAGTGGATATCAAGGCTGAACAACTAGAGCGACAAGTGCAACATCTAGAGCAGGAGAAGGATATGGTAGAGA AGAAATACGAGGTACGTTCAAAATCTAGTCTCATCAGCTTCCTTTCTGTACTCATATTCCCATCAGGCGGAGGCA GAGAAATACAAGAAGGCCAAGGCTGATCTTGATGAACTTGTTGTTTCTATGGAGGGCCTTTAA |