© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|659800 |
| Gene name | |
| Location | scaffold_06:416221..417593 |
| Strand | - |
| Gene length (bp) | 1372 |
| Transcript length (bp) | 1233 |
| Coding sequence length (bp) | 1233 |
| Protein length (aa) | 411 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09445 | Methyltransf_15 | RNA cap guanine-N2 methyltransferase | 2.1E-35 | 190 | 399 |
| PF13649 | Methyltransf_25 | Methyltransferase domain | 3.1E-07 | 192 | 246 |
| PF02475 | Met_10 | Met-10+ like-protein | 5.6E-07 | 178 | 251 |
| PF08241 | Methyltransf_11 | Methyltransferase domain | 2.4E-04 | 193 | 246 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q96RS0|TGS1_HUMAN | Trimethylguanosine synthase OS=Homo sapiens GN=TGS1 PE=1 SV=3 | 129 | 401 | 6.0E-55 |
| sp|Q923W1|TGS1_MOUSE | Trimethylguanosine synthase OS=Mus musculus GN=Tgs1 PE=1 SV=2 | 138 | 401 | 2.0E-54 |
| sp|P85107|TGS1_RAT | Trimethylguanosine synthase OS=Rattus norvegicus GN=Tgs1 PE=1 SV=1 | 128 | 401 | 3.0E-53 |
| sp|Q09814|TGS1_SCHPO | Trimethylguanosine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tgs1 PE=1 SV=3 | 140 | 359 | 1.0E-33 |
| sp|Q12052|TGS1_YEAST | Trimethylguanosine synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TGS1 PE=1 SV=1 | 144 | 359 | 1.0E-19 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009452 | 7-methylguanosine RNA capping | Yes |
| GO:0008168 | methyltransferase activity | Yes |
| GO:0001510 | RNA methylation | Yes |
| GO:0003674 | molecular_function | No |
| GO:0008150 | biological_process | No |
| GO:0016740 | transferase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0009451 | RNA modification | No |
| GO:0006396 | RNA processing | No |
| GO:0044238 | primary metabolic process | No |
| GO:0043414 | macromolecule methylation | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0032259 | methylation | No |
| GO:0009987 | cellular process | No |
| GO:0016741 | transferase activity, transferring one-carbon groups | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0043412 | macromolecule modification | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0036260 | RNA capping | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.5 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|659800 MQTKLCTKFGLWEFAQERIDLWFALFLLPSCLPSYDSFAGTKMGKRKSRTGMTGLSRFISALNEGESGTQPSIST NSVDSAASAHEQNDFTMKEVNGETNTDSASAPISISVATISKKQKIIPHYDATGLVPTYTNEAMVPDHLKKYFSQ RTRYFSLYDTPPGCLLDEEGWYSVTPERVANQIAERCRCDVVLDAFCGVGGNTIAFAKTCERVIALDTNPTRLAL ARHNAQIYGVADRIEFIQADYISFARAYLSSFSTRSPSSNASTPPRNKTRKIDVVFLSPPWGGPSYLSGSPSHDI VNNVAKDNLPQTDGQDSHPTYSFSSIQPIHGKDLFTLTRRITSNIAYYLPRNTDLPEISDLLNATDDHGRSVKLS GERIEVEEEWMGSKLKALTCYFGGLVAGQEDLFSR* |
| Coding | >Agabi119p4|659800 ATGCAAACTAAATTATGTACTAAATTTGGATTGTGGGAATTTGCACAGGAGAGAATTGATCTCTGGTTCGCCCTC TTCCTCCTACCGTCTTGCCTTCCCTCATACGATTCGTTTGCTGGCACAAAGATGGGCAAACGTAAATCAAGGACT GGGATGACTGGGCTGTCGCGTTTTATCAGTGCTTTGAATGAAGGAGAGTCCGGGACACAACCCTCGATCTCAACG AACTCTGTCGACTCAGCTGCCTCAGCTCACGAGCAGAACGATTTCACAATGAAAGAAGTTAATGGCGAAACAAAC ACAGACTCTGCGTCAGCGCCAATCTCAATATCTGTCGCAACAATATCGAAGAAACAAAAAATCATTCCTCACTAT GACGCGACCGGTCTCGTACCCACATATACCAACGAAGCTATGGTTCCAGATCATCTCAAGAAATACTTTTCTCAG CGAACACGATATTTTTCGTTATACGATACGCCGCCTGGATGCCTTCTCGATGAAGAAGGATGGTACAGCGTGACA CCTGAGAGGGTTGCAAATCAAATAGCTGAGCGATGTCGATGCGACGTCGTTTTAGATGCTTTCTGCGGTGTCGGT GGGAATACTATCGCTTTTGCCAAAACTTGCGAACGAGTGATTGCGCTGGATACCAATCCCACGAGGTTAGCGCTG GCGAGGCACAACGCTCAGATATACGGCGTTGCAGATCGTATAGAATTTATCCAAGCAGATTATATTTCATTTGCC CGCGCATATCTTTCCTCGTTCTCGACCCGGTCGCCGTCATCAAATGCCTCGACGCCGCCACGAAACAAAACGAGA AAGATTGACGTCGTGTTTCTCAGTCCTCCGTGGGGTGGCCCTTCCTACCTCTCAGGTTCACCCAGCCATGACATC GTCAACAACGTTGCCAAGGATAATCTCCCTCAGACTGATGGTCAAGATTCACACCCCACTTATTCCTTTTCATCT ATTCAGCCTATTCACGGGAAAGATCTTTTTACTCTCACACGCAGAATCACATCAAACATTGCATATTATTTACCT CGCAACACTGATCTTCCAGAAATCAGTGATTTGTTAAATGCTACCGATGATCATGGCCGTTCGGTAAAGTTATCG GGAGAGCGGATTGAGGTTGAAGAGGAGTGGATGGGGAGTAAGCTGAAAGCTCTGACGTGTTATTTTGGTGGGCTT GTTGCCGGACAAGAAGATTTGTTCTCTAGGTAG |
| Transcript | >Agabi119p4|659800 ATGCAAACTAAATTATGTACTAAATTTGGATTGTGGGAATTTGCACAGGAGAGAATTGATCTCTGGTTCGCCCTC TTCCTCCTACCGTCTTGCCTTCCCTCATACGATTCGTTTGCTGGCACAAAGATGGGCAAACGTAAATCAAGGACT GGGATGACTGGGCTGTCGCGTTTTATCAGTGCTTTGAATGAAGGAGAGTCCGGGACACAACCCTCGATCTCAACG AACTCTGTCGACTCAGCTGCCTCAGCTCACGAGCAGAACGATTTCACAATGAAAGAAGTTAATGGCGAAACAAAC ACAGACTCTGCGTCAGCGCCAATCTCAATATCTGTCGCAACAATATCGAAGAAACAAAAAATCATTCCTCACTAT GACGCGACCGGTCTCGTACCCACATATACCAACGAAGCTATGGTTCCAGATCATCTCAAGAAATACTTTTCTCAG CGAACACGATATTTTTCGTTATACGATACGCCGCCTGGATGCCTTCTCGATGAAGAAGGATGGTACAGCGTGACA CCTGAGAGGGTTGCAAATCAAATAGCTGAGCGATGTCGATGCGACGTCGTTTTAGATGCTTTCTGCGGTGTCGGT GGGAATACTATCGCTTTTGCCAAAACTTGCGAACGAGTGATTGCGCTGGATACCAATCCCACGAGGTTAGCGCTG GCGAGGCACAACGCTCAGATATACGGCGTTGCAGATCGTATAGAATTTATCCAAGCAGATTATATTTCATTTGCC CGCGCATATCTTTCCTCGTTCTCGACCCGGTCGCCGTCATCAAATGCCTCGACGCCGCCACGAAACAAAACGAGA AAGATTGACGTCGTGTTTCTCAGTCCTCCGTGGGGTGGCCCTTCCTACCTCTCAGGTTCACCCAGCCATGACATC GTCAACAACGTTGCCAAGGATAATCTCCCTCAGACTGATGGTCAAGATTCACACCCCACTTATTCCTTTTCATCT ATTCAGCCTATTCACGGGAAAGATCTTTTTACTCTCACACGCAGAATCACATCAAACATTGCATATTATTTACCT CGCAACACTGATCTTCCAGAAATCAGTGATTTGTTAAATGCTACCGATGATCATGGCCGTTCGGTAAAGTTATCG GGAGAGCGGATTGAGGTTGAAGAGGAGTGGATGGGGAGTAAGCTGAAAGCTCTGACGTGTTATTTTGGTGGGCTT GTTGCCGGACAAGAAGATTTGTTCTCTAGGTAG |
| Gene | >Agabi119p4|659800 ATGCAAACTAAATTATGTACTAAATTTGGATTGTGGGAATTTGCACAGGAGAGAATTGATCTCTGGTTCGCCCTC TTCCTCCTACCGTCTTGCCTTCCCTCATACGATTCGTTTGCTGGCACAAAGATGGGCAAACGTAAATCAAGGACT GGGATGACTGGGCTGTCGCGTTTTATCAGTGCTTTGAATGAAGGAGAGTCCGGGACACAACCCTCGATCTCAACG AACTCTGTCGACTCAGCTGCCTCAGCTCACGAGCAGAACGATTTCACAATGAAAGAAGTTAATGGCGAAACAAAC ACAGACTCTGCGTCAGCGCCAATCTCAATATCTGTCGCAACAATATCGAAGAAACAAAAAATCATTCCTCACTAT GACGCGACCGGTCTCGTACCCACATATACCAACGAAGCTATGGTTCCAGATCATCTCAAGAAATGTCCGTGCTTG TCATAGGGTTTTTAACGTCGTTTGAAACGACAAACTCATGCCACTTGTATTGGTTGCCTCCGCTTGTAGACTTTT CTCAGCGAACACGATATTTTTCGTTATACGATACGCCGCCTGGATGCCTTCTCGATGAAGAAGGATGGTACAGCG TGACACCTGAGAGGGTTGCAAATCAAATAGCTGAGCGATGTCGATGCGACGTCGTTTTAGATGCTTTCTGCGGTG TCGGTGGGAATACTATCGCTTTTGCCAAAACTTGCGAACGAGGTTTGGAGGACAAATTTATCTTTTTTTTTTGCC TTCAGCTGAGGCTCGCCCTTTTCTAGTGATTGCGCTGGATACCAATCCCACGAGGTTAGCGCTGGCGAGGCACAA CGCTCAGATATACGGCGTTGCAGATCGTATAGAATTTATCCAAGCAGATTATATTTCATTTGCCCGCGCATATCT TTCCTCGTTCTCGACCCGGTCGCCGTCATCAAATGCCTCGACGCCGCCACGAAACAAAACGAGAAAGATTGACGT CGTGTTTCTCAGTCCTCCGTGGGGTGGCCCTTCCTACCTCTCAGGTTCACCCAGCCATGACATCGTCAACAACGT TGCCAAGGATAATCTCCCTCAGACTGATGGTCAAGATTCACACCCCACTTATTCCTTTTCATCTATTCAGCCTAT TCACGGGAAAGATCTTTTTACTCTCACACGCAGAATCACATCAAACATTGCATATTATTTACCTCGCAACACTGA TCTTCCAGAAATCAGTGATTTGTTAAATGCTACCGATGATCATGGCCGTTCGGTAAAGTTATCGGGAGAGCGGAT TGAGGTTGAAGAGGAGTGGATGGGGAGTAAGCTGAAAGCTCTGACGTGTTATTTTGGTGGGCTTGTTGCCGGACA AGAAGATTTGTTCTCTAGGTAG |