Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|657950
Gene name
Locationscaffold_06:300539..302457
Strand+
Gene length (bp)1918
Transcript length (bp)1530
Coding sequence length (bp)1530
Protein length (aa) 510

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00494 SQS_PSY Squalene/phytoene synthase 5.8E-36 59 336

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q92459|FDFT_USTMA Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ERG9 PE=3 SV=2 1 416 1.0E-149
sp|Q7S4Z6|FDFT_NEUCR Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 1 395 2.0E-125
sp|P36596|FDFT_SCHPO Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 16 394 2.0E-124
sp|O74165|FDFT_CYBJA Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 1 441 7.0E-116
sp|Q9Y753|FDFT_YARLI Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 10 387 6.0E-115
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Swissprot ID Swissprot Description Start End E-value
sp|Q92459|FDFT_USTMA Squalene synthase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ERG9 PE=3 SV=2 1 416 1.0E-149
sp|Q7S4Z6|FDFT_NEUCR Probable squalene synthase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-6 PE=3 SV=1 1 395 2.0E-125
sp|P36596|FDFT_SCHPO Squalene synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg9 PE=1 SV=1 16 394 2.0E-124
sp|O74165|FDFT_CYBJA Squalene synthase OS=Cyberlindnera jadinii GN=ERG9 PE=3 SV=1 1 441 7.0E-116
sp|Q9Y753|FDFT_YARLI Squalene synthase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SQS1 PE=3 SV=1 10 387 6.0E-115
sp|P78589|FDFT_CANAX Squalene synthase OS=Candida albicans GN=ERG9 PE=3 SV=1 10 435 6.0E-109
sp|P29704|FDFT_YEAST Squalene synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG9 PE=1 SV=2 1 417 2.0E-101
sp|Q752X9|FDFT_ASHGO Squalene synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG9 PE=3 SV=1 10 393 1.0E-94
sp|P53798|FDFT_MOUSE Squalene synthase OS=Mus musculus GN=Fdft1 PE=1 SV=2 11 395 4.0E-94
sp|Q02769|FDFT_RAT Squalene synthase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1 11 374 1.0E-93
sp|Q9HGZ6|FDFT_CANGA Squalene synthase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG9 PE=3 SV=2 1 402 4.0E-92
sp|Q32KR6|FDFT_BOVIN Squalene synthase OS=Bos taurus GN=FDFT1 PE=2 SV=1 11 373 5.0E-92
sp|Q5R6U3|FDFT_PONAB Squalene synthase OS=Pongo abelii GN=FDFT1 PE=2 SV=1 11 374 3.0E-91
sp|P37268|FDFT_HUMAN Squalene synthase OS=Homo sapiens GN=FDFT1 PE=1 SV=1 11 374 3.0E-91
sp|Q54DR1|FDFT_DICDI Squalene synthase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1 11 389 2.0E-83
sp|Q9SDW9|BSS_BOTBR Squalene synthase OS=Botryococcus braunii GN=BSS PE=1 SV=1 1 390 1.0E-80
sp|G0Y287|BOSS_BOTBR Botryococcus squalene synthase OS=Botryococcus braunii GN=SSL-2 PE=1 SV=1 7 367 4.0E-80
sp|P53799|FDFT_ARATH Squalene synthase OS=Arabidopsis thaliana GN=SQS1 PE=1 SV=1 52 405 8.0E-74
sp|P53800|FDFT_NICBE Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1 52 374 2.0E-72
sp|G0Y288|BOCS_BOTBR Botryococcene synthase OS=Botryococcus braunii GN=SSL-3 PE=2 SV=1 10 375 5.0E-55
sp|G0Y286|PSDS_BOTBR Presqualene diphosphate synthase OS=Botryococcus braunii GN=SSL-1 PE=1 SV=1 10 349 8.0E-52
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GO

GO Term Description Terminal node
GO:0009058 biosynthetic process Yes
GO:0008150 biological_process No
GO:0008152 metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.45

Transmembrane Domains

Domain # Start End Length
1 303 325 22
2 474 496 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|657950
MGATKWLALLLFHPLEFRTLLQFYLYHEQKRDIKALKEHPTSGWDRQSMRRCWDFLDMTSRSFSAVIKELDGDLA
RTICLFYLVLRGLDTIEDDMTIPDKVKQPILRKFHELTVEHGWKFDGCGPNEKDRQLLVEYDTIVEEVNRLDPSF
KEVIIDICHKMENGMADFAHQAATTGKIYIATVAEYDLYCHYVAGLVGEGLSRIFTASGKEAEWLGQQLELSNSM
GLLLQKTNIIRDYREDTDDQRYFWPKEIWGKYGFNEMKEMYAPGASEKAQWVQSGMILDALRHATDALEYLRFLK
NQTIFNFCAIPASMAIATLELCFMNPDMFERNIKIRKATAAQLIMRSTNPRDVGQIFCEYARKIHAKAVPTDPNF
MQISVACGKIEQWCEQNYPSFIQPPNTPGNPPTLDGYDARSRIAEADNKFTSELATRKRMIEIANGDRQIAMQRI
ERFTGSGNNTQASNNGAVSSTTMMFYIAAGIALIVAVGFGVTFAVIKAAGISLKGSGST*
Coding >Agabi119p4|657950
ATGGGTGCTACGAAATGGCTCGCTCTTCTCCTCTTCCACCCTCTCGAGTTCAGGACTCTGCTCCAGTTCTACCTC
TACCATGAGCAGAAGCGTGATATCAAGGCCTTGAAGGAGCACCCGACGTCGGGCTGGGACCGGCAGTCGATGCGG
AGATGTTGGGACTTCCTGGACATGACAAGTAGGAGTTTTTCGGCGGTTATTAAGGAACTAGACGGCGACCTGGCT
CGAACAATATGTCTGTTTTACCTCGTTCTTCGAGGTCTGGACACGATCGAAGATGATATGACCATTCCAGACAAA
GTCAAGCAACCCATTTTACGAAAGTTTCACGAATTAACCGTCGAACATGGATGGAAATTCGACGGTTGCGGTCCT
AATGAGAAGGACCGCCAACTCCTTGTCGAATATGACACAATTGTTGAAGAAGTCAACCGCCTTGACCCTTCCTTC
AAAGAGGTTATTATTGACATTTGCCATAAAATGGAAAATGGCATGGCCGACTTTGCCCATCAAGCCGCAACAACA
GGGAAGATTTACATTGCGACCGTCGCTGAATACGACCTATACTGTCACTACGTCGCAGGCCTCGTCGGTGAGGGG
TTATCCCGAATTTTCACCGCATCAGGGAAAGAAGCCGAGTGGCTTGGTCAGCAGCTCGAGTTATCGAACTCCATG
GGACTTCTTCTACAAAAGACCAACATCATCCGTGACTACCGAGAGGACACTGACGATCAACGATATTTCTGGCCC
AAAGAAATTTGGGGCAAGTATGGTTTCAACGAGATGAAAGAAATGTACGCACCAGGGGCATCAGAAAAAGCCCAA
TGGGTGCAGAGCGGAATGATCTTGGATGCCCTCAGGCACGCGACCGATGCTTTGGAATATCTCCGATTCTTAAAG
AACCAGACCATTTTCAACTTTTGTGCCATTCCTGCCTCCATGGCTATCGCCACCCTAGAGCTGTGCTTTATGAAC
CCTGATATGTTCGAGCGGAATATCAAGATTCGTAAGGCTACTGCCGCTCAGCTTATTATGCGATCTACAAATCCT
CGCGATGTTGGTCAGATCTTCTGCGAATACGCTCGTAAAATTCATGCGAAAGCCGTCCCGACCGATCCCAACTTC
ATGCAGATTTCAGTCGCCTGTGGCAAGATTGAACAGTGGTGTGAACAAAACTATCCTTCATTCATTCAACCACCC
AACACGCCAGGTAACCCTCCCACACTGGATGGATATGATGCTCGTTCACGTATCGCCGAGGCCGACAACAAATTT
ACATCAGAACTCGCTACCCGTAAACGTATGATCGAAATAGCCAACGGAGATCGTCAAATCGCAATGCAACGAATT
GAGAGATTCACAGGTAGTGGCAATAATACCCAAGCGTCGAACAATGGTGCAGTGTCGTCAACGACTATGATGTTC
TATATCGCTGCTGGGATTGCATTGATTGTCGCTGTCGGTTTCGGTGTAACGTTCGCTGTTATCAAGGCTGCTGGT
ATTTCTTTGAAAGGTTCGGGGTCAACATAA
Transcript >Agabi119p4|657950
ATGGGTGCTACGAAATGGCTCGCTCTTCTCCTCTTCCACCCTCTCGAGTTCAGGACTCTGCTCCAGTTCTACCTC
TACCATGAGCAGAAGCGTGATATCAAGGCCTTGAAGGAGCACCCGACGTCGGGCTGGGACCGGCAGTCGATGCGG
AGATGTTGGGACTTCCTGGACATGACAAGTAGGAGTTTTTCGGCGGTTATTAAGGAACTAGACGGCGACCTGGCT
CGAACAATATGTCTGTTTTACCTCGTTCTTCGAGGTCTGGACACGATCGAAGATGATATGACCATTCCAGACAAA
GTCAAGCAACCCATTTTACGAAAGTTTCACGAATTAACCGTCGAACATGGATGGAAATTCGACGGTTGCGGTCCT
AATGAGAAGGACCGCCAACTCCTTGTCGAATATGACACAATTGTTGAAGAAGTCAACCGCCTTGACCCTTCCTTC
AAAGAGGTTATTATTGACATTTGCCATAAAATGGAAAATGGCATGGCCGACTTTGCCCATCAAGCCGCAACAACA
GGGAAGATTTACATTGCGACCGTCGCTGAATACGACCTATACTGTCACTACGTCGCAGGCCTCGTCGGTGAGGGG
TTATCCCGAATTTTCACCGCATCAGGGAAAGAAGCCGAGTGGCTTGGTCAGCAGCTCGAGTTATCGAACTCCATG
GGACTTCTTCTACAAAAGACCAACATCATCCGTGACTACCGAGAGGACACTGACGATCAACGATATTTCTGGCCC
AAAGAAATTTGGGGCAAGTATGGTTTCAACGAGATGAAAGAAATGTACGCACCAGGGGCATCAGAAAAAGCCCAA
TGGGTGCAGAGCGGAATGATCTTGGATGCCCTCAGGCACGCGACCGATGCTTTGGAATATCTCCGATTCTTAAAG
AACCAGACCATTTTCAACTTTTGTGCCATTCCTGCCTCCATGGCTATCGCCACCCTAGAGCTGTGCTTTATGAAC
CCTGATATGTTCGAGCGGAATATCAAGATTCGTAAGGCTACTGCCGCTCAGCTTATTATGCGATCTACAAATCCT
CGCGATGTTGGTCAGATCTTCTGCGAATACGCTCGTAAAATTCATGCGAAAGCCGTCCCGACCGATCCCAACTTC
ATGCAGATTTCAGTCGCCTGTGGCAAGATTGAACAGTGGTGTGAACAAAACTATCCTTCATTCATTCAACCACCC
AACACGCCAGGTAACCCTCCCACACTGGATGGATATGATGCTCGTTCACGTATCGCCGAGGCCGACAACAAATTT
ACATCAGAACTCGCTACCCGTAAACGTATGATCGAAATAGCCAACGGAGATCGTCAAATCGCAATGCAACGAATT
GAGAGATTCACAGGTAGTGGCAATAATACCCAAGCGTCGAACAATGGTGCAGTGTCGTCAACGACTATGATGTTC
TATATCGCTGCTGGGATTGCATTGATTGTCGCTGTCGGTTTCGGTGTAACGTTCGCTGTTATCAAGGCTGCTGGT
ATTTCTTTGAAAGGTTCGGGGTCAACATAA
Gene >Agabi119p4|657950
ATGGGTGCTACGAAATGGCTCGCTCTTCTCCTCTTCCACCCTCTCGAGTTCAGGACTCTGCTCCAGTTCTACCTC
TACCATGAGCAGAAGCGTGATATCAAGGCCTTGAAGGAGCACCCGACGTCGGGCTGGGACCGGCAGTCGATGCGG
AGATGTTGGGACTTCCTGGACATGACAAGTAGGAGTTTTTCGGCGGTTATTAAGGAACTAGACGGCGACCTGGCT
CGAACAGTGAGTATCCTTGTCTAGTCTTCCTCGGAGGCTTCATATTTCATACGCCCGTCGATTTGCTCGTACGAG
GAGCCGGGTAGACTTTGTGGCCACGTCGCCCTATAGGAGGGTATTTGTGCAAGAATCATCCATTTGTTGACGTGG
CTATTATTTTAATCGCCGGAATAGAAGCCCCCTATCACGCCGTCTGTGTATGGACCACGCTGACCATGTGTCTAG
ATATGTCTGTTTTACCTCGTTCTTCGAGGTCTGGACACGATCGAAGATGATATGACCATTCCAGACAAAGTCAAG
CAACCCATTTTACGAAAGTTTCACGAATTAACCGTCGAACATGGATGGAAATTCGACGGTTGCGGTCCTAATGAG
AAGGACCGCCAACTCCTTGTCGAATATGACACAATTGTTGAAGAAGTCAACCGCCTTGACCCTTCGTACGTTTTT
GATTCATCGTTTCCCCAAATATTCTTCTCAAATACCATGCTTTCTAGCTTCAAAGAGGTTATTATTGACATTTGC
CATAAAATGGAAAATGGCATGGCCGACTTTGCCCATCAAGCCGCAACAACAGGGAAGATTTACATTGCGACCGTC
GCTGAATACGACCTATACTGTCACTACGTCGCAGGCCTCGTCGGTGAGGGGTTATCCCGAATTTTCACCGCATCA
GGGAAAGAAGCCGAGTGGCTTGGTCAGCAGCTCGAGTTATCGAACTCCATGGGACTTCTTCTACAAAAGACCAAC
ATCATCCGTGACTACCGAGAGGACACTGACGATCAACGATATTTCTGGCCCAAAGAAATTTGGGGCAAGTATGGT
TTCAACGAGATGAAAGAAATGTACGCACCAGGGGCATCAGAAAAAGCCCAATGGGTGCAGAGCGGAATGATCTTG
GATGCCCTCAGGCACGCGACCGATGCTTTGGAATATCTCCGATTCTTAAAGAACCAGACCATTTTCAACTTTTGT
GCCATTCCTGCCTCCATGGCTATCGCCACCCTAGAGCTGTGCTTTATGAACCCTGATATGTTCGAGCGGAATATC
AAGATTCGTAAGGCTACTGCCGCTCAGGTAGGTCGCTTTGATTTCACTCCAAGCTTCTACTCAAATTGCATACCT
CATTTCAGCTTATTATGCGATCTACAAATCCTCGCGATGTTGGTCAGATCTTCTGCGAATACGCTCGTAAAATTC
ATGCGAAAGCCGTCCCGACCGATCCCAACTTCATGCAGATTTCAGTCGCCTGTGGCAAGGTACATATACTGTTAT
TCTATGCAGGTTCGCCGAATTAATTTTAATTTTCCTGCAGATTGAACAGTGGTGTGAACAAAACTATCCTTCATT
CATTCAACCACCCAACACGCCAGGTAACCCTCCCACACTGGATGGATATGATGCTCGTTCACGTATCGCCGAGGC
CGACAACAAATTTACATCAGAACTCGCTACCCGTAAACGTATGATCGAAATAGCCAACGGAGATCGTCAAATCGC
AATGCAACGAATTGAGAGATTCACAGGTAGTGGCAATAATACCCAAGCGTCGAACAATGGTGCAGTGTCGTCAAC
GACTATGATGTTCTATATCGCTGCTGGGATTGCATTGATTGTCGCTGTCGGTTTCGGTGTAACGTTCGCTGTTAT
CAAGGCTGCTGGTATTTCTTTGAAAGGTTCGGGGTCAACATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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