Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|647200
Gene name
Location	scaffold_05a:1440558..1441246
Strand	-
Gene length (bp)	688
Transcript length (bp)	534
Coding sequence length (bp)	534
Protein length (aa)	178

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04438	zf-HIT	HIT zinc finger	2.9E-09	137	165

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q54NW0\|ZNHI1_DICDI	Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=znhit1 PE=3 SV=1	104	176	3.0E-19
sp\|Q9FHW2\|SWC6_ARATH	SWR1 complex subunit 6 OS=Arabidopsis thaliana GN=SWC6 PE=1 SV=1	103	172	2.0E-14
sp\|Q8R331\|ZNHI1_MOUSE	Zinc finger HIT domain-containing protein 1 OS=Mus musculus GN=Znhit1 PE=2 SV=1	99	172	9.0E-14
sp\|O43257\|ZNHI1_HUMAN	Zinc finger HIT domain-containing protein 1 OS=Homo sapiens GN=ZNHIT1 PE=1 SV=1	99	172	2.0E-13
sp\|Q24JY4\|ZNHI1_BOVIN	Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1 PE=2 SV=1	99	172	2.0E-13

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q54NW0\|ZNHI1_DICDI	Zinc finger HIT domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=znhit1 PE=3 SV=1	104	176	3.0E-19
sp\|Q9FHW2\|SWC6_ARATH	SWR1 complex subunit 6 OS=Arabidopsis thaliana GN=SWC6 PE=1 SV=1	103	172	2.0E-14
sp\|Q8R331\|ZNHI1_MOUSE	Zinc finger HIT domain-containing protein 1 OS=Mus musculus GN=Znhit1 PE=2 SV=1	99	172	9.0E-14
sp\|O43257\|ZNHI1_HUMAN	Zinc finger HIT domain-containing protein 1 OS=Homo sapiens GN=ZNHIT1 PE=1 SV=1	99	172	2.0E-13
sp\|Q24JY4\|ZNHI1_BOVIN	Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1 PE=2 SV=1	99	172	2.0E-13
sp\|O59669\|VPS71_SCHPO	SWR1 complex subunit vps71 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps71 PE=1 SV=2	20	172	1.0E-11
sp\|Q4U9I8\|SEY1_THEAN	Protein SEY1 homolog OS=Theileria annulata GN=TA08650 PE=3 SV=1	61	172	6.0E-10

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 13	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|647200 MPSKKSRQQLARQVNLPNQVLTPELITKRTKRHLDELERSNYSEANIASVSDEEGGEGGPAKHGRARQTISDKRT NLVIPGSSSAALRKKSTMSVRTALLYKKNLQTLIEESGIAALPGDIPTYLTAAAPPPIYPARMLCSVCSYWGSYK CKRCAMPYCGLNCEKVHNETRCDGRIL*
Coding	>Agabi119p4\|647200 ATGCCTTCCAAGAAGAGCAGACAGCAGCTCGCTCGGCAGGTCAATCTCCCAAACCAAGTCCTGACCCCCGAACTC ATCACAAAGAGGACCAAACGACACCTCGATGAACTAGAAAGATCTAATTACTCCGAGGCTAATATAGCCTCCGTA TCCGATGAAGAAGGTGGGGAGGGCGGCCCCGCCAAGCATGGTCGCGCTAGACAGACCATCTCGGACAAACGGACA AACCTCGTCATTCCCGGTTCTTCTTCCGCTGCACTTAGGAAGAAGTCAACGATGAGTGTCCGTACCGCCCTGCTG TACAAGAAAAATTTGCAAACTCTGATTGAAGAATCCGGTATAGCTGCCCTCCCTGGAGATATTCCGACCTATTTA ACCGCAGCCGCGCCTCCACCTATATATCCGGCTCGCATGTTATGTTCTGTGTGCAGTTACTGGGGTAGTTACAAG TGCAAACGCTGCGCAATGCCGTACTGCGGTCTGAACTGCGAAAAGGTTCACAACGAGACACGATGCGACGGGCGC ATTCTGTAG
Transcript	>Agabi119p4\|647200 ATGCCTTCCAAGAAGAGCAGACAGCAGCTCGCTCGGCAGGTCAATCTCCCAAACCAAGTCCTGACCCCCGAACTC ATCACAAAGAGGACCAAACGACACCTCGATGAACTAGAAAGATCTAATTACTCCGAGGCTAATATAGCCTCCGTA TCCGATGAAGAAGGTGGGGAGGGCGGCCCCGCCAAGCATGGTCGCGCTAGACAGACCATCTCGGACAAACGGACA AACCTCGTCATTCCCGGTTCTTCTTCCGCTGCACTTAGGAAGAAGTCAACGATGAGTGTCCGTACCGCCCTGCTG TACAAGAAAAATTTGCAAACTCTGATTGAAGAATCCGGTATAGCTGCCCTCCCTGGAGATATTCCGACCTATTTA ACCGCAGCCGCGCCTCCACCTATATATCCGGCTCGCATGTTATGTTCTGTGTGCAGTTACTGGGGTAGTTACAAG TGCAAACGCTGCGCAATGCCGTACTGCGGTCTGAACTGCGAAAAGGTTCACAACGAGACACGATGCGACGGGCGC ATTCTGTAG
Gene	>Agabi119p4\|647200 ATGCCTTCCAAGAAGAGCAGACAGCAGCGTATGTCCTTATTTCTGCGCGCATCATACTGATTGATCATTCTTTAT CAAGTCGCTCGGCAGGTCAATCTCCCAAACCAAGTCCTGACCCCCGAACTCATCACAAAGAGGACCAAACGACAC CTCGATGAACTAGAAGTATGTTTTTCTTTTCTCTCCCGGACGTGCCTTTTTTATGTATCTTCCGTAGAGATCTAA TTACTCCGAGGCTAATATAGCCTCCGTATCCGATGAAGAAGGTGGGGAGGGCGGCCCCGCCAAGCATGGTCGCGC TAGACAGACCATCTCGGACAAACGGACAAACCTCGTCATTCCCGGTTCTTCTTCCGCTGCACTTAGGAAGAAGTC AACGATGAGTGTCCGTACCGCCCTGCTGTACAAGAAAAATTTGCAAACTCTGATTGAAGAATCCGTGAGTAGACC TTTATGAACGCTATGATCATCAGCATCATTTGTTGTGCAGGGTATAGCTGCCCTCCCTGGAGATATTCCGACCTA TTTAACCGCAGCCGCGCCTCCACCTATATATCCGGCTCGCATGTTATGTTCTGTGTGCAGTTACTGGGGTAGTTA CAAGTGCAAACGCTGCGCAATGCCGTACTGCGGTCTGAACTGCGAAAAGGTTCACAACGAGACACGATGCGACGG GCGCATTCTGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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