Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|643850
Gene name
Locationscaffold_05a:1043295..1044332
Strand+
Gene length (bp)1037
Transcript length (bp)936
Coding sequence length (bp)936
Protein length (aa) 312

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 3.2E-11 42 180

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 35 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|643850
MASGSPTFVKLNEENYSTWQKAPSTSSPVTQAEADALDAFEARLDKAAGWLYLMVEQEQRIHFQGIQDSPVKMWE
ALEAVHRQKRAGMRFNAYDDLFSIRKLEESLQSLINRVESSKRKIKELRPSSFTLEQLDDELASMALIRALPDEF
SGFTSSLLLMDKLDKTTVHQAFVTEDLQRRKRAQDASGSSQALAACSGSQFATKTCDFCGREGHKFTECKTFERA
KSRAQEDAQKPRTPYKRANKAQEESGSSSSTQTPEKAQRVTEFAGNASTPYPSPSPSPSTPLQLDADFHWLADTG
ATSHMTPHRHC*
Coding >Agabi119p4|643850
ATGGCCTCCGGATCGCCCACCTTCGTGAAACTCAACGAGGAGAACTACTCCACATGGCAGAAGGCTCCCTCAACC
TCTAGCCCTGTTACCCAGGCCGAAGCGGACGCTCTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGG
CTATACCTCATGGTGGAACAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAG
GCTCTAGAGGCTGTACATCGACAGAAGAGGGCTGGAATGCGTTTCAATGCCTATGATGACCTCTTCTCCATCCGA
AAACTCGAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAGCTCAGACCC
TCCTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTT
TCCGGCTTCACATCGTCTCTATTGCTTATGGATAAGCTGGACAAGACTACAGTCCATCAGGCCTTTGTCACTGAG
GACTTACAACGTCGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTTGCAGCTTGCTCTGGCTCCCAA
TTTGCGACAAAAACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCACTGAATGCAAAACCTTCGAGAGAGCG
AAGTCCCGGGCACAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACAAGGCTCAGGAAGAGTCT
GGGAGCTCTAGCTCGACTCAGACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGTACTCCT
TATCCCTCACCTTCTCCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGG
GCCACTTCTCATATGACCCCTCACCGGCACTGCTGA
Transcript >Agabi119p4|643850
ATGGCCTCCGGATCGCCCACCTTCGTGAAACTCAACGAGGAGAACTACTCCACATGGCAGAAGGCTCCCTCAACC
TCTAGCCCTGTTACCCAGGCCGAAGCGGACGCTCTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGG
CTATACCTCATGGTGGAACAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAG
GCTCTAGAGGCTGTACATCGACAGAAGAGGGCTGGAATGCGTTTCAATGCCTATGATGACCTCTTCTCCATCCGA
AAACTCGAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAGCTCAGACCC
TCCTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTT
TCCGGCTTCACATCGTCTCTATTGCTTATGGATAAGCTGGACAAGACTACAGTCCATCAGGCCTTTGTCACTGAG
GACTTACAACGTCGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTTGCAGCTTGCTCTGGCTCCCAA
TTTGCGACAAAAACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCACTGAATGCAAAACCTTCGAGAGAGCG
AAGTCCCGGGCACAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACAAGGCTCAGGAAGAGTCT
GGGAGCTCTAGCTCGACTCAGACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGTACTCCT
TATCCCTCACCTTCTCCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGG
GCCACTTCTCATATGACCCCTCACCGGCACTGCTGA
Gene >Agabi119p4|643850
ATGGCCTCCGGATCGCCCACCTTCGTGAAACTCAACGAGGAGAACTACTCCACATGGTCTGGAGAGATGGAGGCG
TGGCTGAGAGCCTCTGGGCTCTAGAGACTTGTCTCAGGCAGGCAGAAGGCTCCCTCAACCTCTAGCCCTGTTACC
CAGGCCGAAGCGGACGCTCTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTATACCTCATGGTG
GAACAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAGGCTCTAGAGGCTGTA
CATCGACAGAAGAGGGCTGGAATGCGTTTCAATGCCTATGATGACCTCTTCTCCATCCGAAAACTCGAGGAGTCC
CTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAGCTCAGACCCTCCTCCTTCACTCTA
GAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTTTCCGGCTTCACATCG
TCTCTATTGCTTATGGATAAGCTGGACAAGACTACAGTCCATCAGGCCTTTGTCACTGAGGACTTACAACGTCGA
AAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTTGCAGCTTGCTCTGGCTCCCAATTTGCGACAAAAACC
TGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCACTGAATGCAAAACCTTCGAGAGAGCGAAGTCCCGGGCACAG
GAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGCTCTAGCTCG
ACTCAGACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGTACTCCTTATCCCTCACCTTCT
CCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACTTCTCATATG
ACCCCTCACCGGCACTGGTTCAAGTCATATACCAGTCACAAAATCCCCATCCGACTAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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