Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|641200
Gene name
Locationscaffold_05a:868480..868929
Strand-
Gene length (bp)449
Transcript length (bp)339
Coding sequence length (bp)339
Protein length (aa) 113

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08293 MRP-S33 Mitochondrial ribosomal subunit S27 1.8E-18 31 98

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P53305|RT27_YEAST Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM27 PE=1 SV=1 31 100 6.0E-10

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|641200
METQKFPGSLFARVCPSSLYHVAVAQRTRKTPRRAQTSAKYLRRHLRGPAMVAYYPPKIDIAAIVRQYPSLEMVN
EDEQTRLEDIEFKKKRGKGAPKKAKTKSDSRRAGKRR*
Coding >Agabi119p4|641200
ATGGAAACCCAAAAATTCCCCGGCTCTCTGTTTGCCCGTGTTTGCCCCTCCTCCCTTTACCATGTTGCCGTGGCT
CAGCGCACCCGGAAAACGCCTCGCCGCGCTCAGACAAGCGCTAAATACCTCAGGCGCCATCTGCGCGGTCCTGCC
ATGGTCGCGTACTACCCACCCAAAATTGACATTGCAGCCATAGTCAGGCAGTATCCGTCGTTGGAGATGGTCAAC
GAAGACGAGCAGACGAGATTGGAGGATATTGAATTTAAGAAGAAGAGAGGCAAGGGTGCTCCGAAGAAAGCCAAG
ACGAAGAGTGATTCTCGTAGAGCTGGAAAGAGGCGATGA
Transcript >Agabi119p4|641200
ATGGAAACCCAAAAATTCCCCGGCTCTCTGTTTGCCCGTGTTTGCCCCTCCTCCCTTTACCATGTTGCCGTGGCT
CAGCGCACCCGGAAAACGCCTCGCCGCGCTCAGACAAGCGCTAAATACCTCAGGCGCCATCTGCGCGGTCCTGCC
ATGGTCGCGTACTACCCACCCAAAATTGACATTGCAGCCATAGTCAGGCAGTATCCGTCGTTGGAGATGGTCAAC
GAAGACGAGCAGACGAGATTGGAGGATATTGAATTTAAGAAGAAGAGAGGCAAGGGTGCTCCGAAGAAAGCCAAG
ACGAAGAGTGATTCTCGTAGAGCTGGAAAGAGGCGATGA
Gene >Agabi119p4|641200
ATGGAAACCCAAAAATTCCCCGGCTCTCTGTTTGCCCGTGTTTGCCCCTCCTCCCTTTACCATGTTGCCGTGGCT
CAGCGCACCCGGAAAACGCCTCGCCGCGCTCAGACAAGTCCGTGCTGCCGTCTTCCAAACCGCTTTCAATCCCAC
CAATGTCCGCACAGGCGCTAAATACCTCAGGCGCCATCTGCGCGGTCCTGCCATGGTCGCGTACTACCCACCCAA
AATTGACATTGCAGCCATAGTCAGGCAGTATCCGTCGTTGGAGATGGTCAACGAAGACGAGCAGACGAGATTGGA
GGATATTGAATTTAAGAAGAAGAGAGGCAAGGGTGCTCCGAAGAAAGCCAAGACGAAGAGTAGGTTTTTACTCCT
GATGGTATTCTACCATCTGTTGACGTTCTCTTTTTCTTCTAGGTGATTCTCGTAGAGCTGGAAAGAGGCGATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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