Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|639000
Gene name
Locationscaffold_05a:497440..498342
Strand+
Gene length (bp)902
Transcript length (bp)732
Coding sequence length (bp)732
Protein length (aa) 244

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00652 Ricin_B_lectin Ricin-type beta-trefoil lectin domain 6.8E-24 108 233
PF14200 RicinB_lectin_2 Ricin-type beta-trefoil lectin domain-like 2.6E-09 105 178
PF14200 RicinB_lectin_2 Ricin-type beta-trefoil lectin domain-like 4.1E-07 153 222

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O54161|EABF_STRCO Extracellular exo-alpha-L-arabinofuranosidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=abfB PE=1 SV=1 117 239 1.0E-10
sp|P96463|EABF_STRLI Extracellular exo-alpha-L-arabinofuranosidase OS=Streptomyces lividans GN=abfB PE=1 SV=2 117 239 4.0E-10
sp|P26514|XYNA_STRLI Endo-1,4-beta-xylanase A OS=Streptomyces lividans GN=xlnA PE=1 SV=2 83 233 4.0E-09
sp|Q05308|SP1_RARFA Serine protease 1 OS=Rarobacter faecitabidus PE=1 SV=1 100 180 3.0E-07
sp|P22222|E13B_CELCE Glucan endo-1,3-beta-glucosidase OS=Cellulosimicrobium cellulans PE=1 SV=1 116 189 4.0E-07
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O54161|EABF_STRCO Extracellular exo-alpha-L-arabinofuranosidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=abfB PE=1 SV=1 117 239 1.0E-10
sp|P96463|EABF_STRLI Extracellular exo-alpha-L-arabinofuranosidase OS=Streptomyces lividans GN=abfB PE=1 SV=2 117 239 4.0E-10
sp|P26514|XYNA_STRLI Endo-1,4-beta-xylanase A OS=Streptomyces lividans GN=xlnA PE=1 SV=2 83 233 4.0E-09
sp|Q05308|SP1_RARFA Serine protease 1 OS=Rarobacter faecitabidus PE=1 SV=1 100 180 3.0E-07
sp|P22222|E13B_CELCE Glucan endo-1,3-beta-glucosidase OS=Cellulosimicrobium cellulans PE=1 SV=1 116 189 4.0E-07
sp|Q59146|E13B_ARTSW Glucan endo-1,3-beta-glucosidase OS=Arthrobacter sp. (strain YCWD3) GN=glcI PE=3 SV=1 116 189 4.0E-07
[Show less]

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.5

Transmembrane Domains

Domain # Start End Length
1 12 34 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|639000
MYSQNFIRLATLLNVASVVLSATITLSTSTVFTATISSIPASEPVTTTISLSVPASSSPVTVTSSVSASSSSATT
ITSSVPATSSLPVTSTTTMSTPPPSGTPTPSFQIHPNGNTAKCLDVQGDIIENGTPVQIYDCNGTPAQNWIIVPG
EGHVQLAATNHCLDAGATPVDGTKMKIWECFDNLPAQDWFYTDDHRISLTNQGSCLDLTEGNLTNGNAVQVWKCT
DFNANQIWSVSNGTSGPA*
Coding >Agabi119p4|639000
ATGTACTCCCAGAACTTCATTCGCTTGGCCACTTTACTCAATGTGGCGAGTGTAGTTCTTTCCGCCACTATCACC
CTCTCAACCTCTACCGTCTTCACGGCTACTATCTCTTCCATTCCAGCTTCTGAACCGGTCACCACTACAATTAGC
TTGTCGGTGCCAGCTTCGTCGAGTCCAGTTACCGTTACCTCTTCAGTCTCAGCCTCCTCAAGCTCAGCTACTACC
ATCACCTCTTCTGTCCCCGCCACCTCTTCACTTCCGGTTACCAGCACCACTACAATGTCCACTCCTCCTCCATCT
GGTACACCTACTCCTTCTTTCCAGATCCACCCCAATGGAAACACGGCGAAGTGTTTGGACGTTCAAGGGGATATC
ATTGAGAATGGGACGCCAGTCCAAATTTATGATTGCAATGGGACACCTGCCCAGAATTGGATTATTGTACCGGGA
GAAGGCCACGTCCAACTGGCTGCCACTAACCATTGTTTAGATGCTGGTGCTACTCCAGTCGATGGTACTAAAATG
AAGATTTGGGAATGTTTCGATAATTTGCCAGCTCAGGATTGGTTCTACACTGATGACCACAGGATTTCTCTTACC
AATCAAGGTTCCTGCCTCGATCTCACCGAGGGTAATTTGACCAATGGAAATGCGGTACAAGTTTGGAAATGCACC
GACTTCAATGCCAACCAAATTTGGAGCGTTTCTAACGGTACTTCTGGTCCAGCTTGA
Transcript >Agabi119p4|639000
ATGTACTCCCAGAACTTCATTCGCTTGGCCACTTTACTCAATGTGGCGAGTGTAGTTCTTTCCGCCACTATCACC
CTCTCAACCTCTACCGTCTTCACGGCTACTATCTCTTCCATTCCAGCTTCTGAACCGGTCACCACTACAATTAGC
TTGTCGGTGCCAGCTTCGTCGAGTCCAGTTACCGTTACCTCTTCAGTCTCAGCCTCCTCAAGCTCAGCTACTACC
ATCACCTCTTCTGTCCCCGCCACCTCTTCACTTCCGGTTACCAGCACCACTACAATGTCCACTCCTCCTCCATCT
GGTACACCTACTCCTTCTTTCCAGATCCACCCCAATGGAAACACGGCGAAGTGTTTGGACGTTCAAGGGGATATC
ATTGAGAATGGGACGCCAGTCCAAATTTATGATTGCAATGGGACACCTGCCCAGAATTGGATTATTGTACCGGGA
GAAGGCCACGTCCAACTGGCTGCCACTAACCATTGTTTAGATGCTGGTGCTACTCCAGTCGATGGTACTAAAATG
AAGATTTGGGAATGTTTCGATAATTTGCCAGCTCAGGATTGGTTCTACACTGATGACCACAGGATTTCTCTTACC
AATCAAGGTTCCTGCCTCGATCTCACCGAGGGTAATTTGACCAATGGAAATGCGGTACAAGTTTGGAAATGCACC
GACTTCAATGCCAACCAAATTTGGAGCGTTTCTAACGGTACTTCTGGTCCAGCTTGA
Gene >Agabi119p4|639000
ATGTACTCCCAGAACTTCATTCGCTTGGCCACTTTACTCAATGTGGCGAGTGTAGTTCTTTCCGCCACTATCACC
CTCTCAACCTCTACCGTCTTCACGGCTACTATCTCTTCCATTCCAGCTTCTGAACCGGTCACCACTACAATTAGC
TTGTCGGTGCCAGCTTCGTCGAGTCCAGTTACCGTTACCTCTTCAGTCTCAGCCTCCTCAAGCTCAGCTACTACC
ATCACCTCTTCTGTCCCCGCCACCTCTTCACTTCCGGTTACCAGCACCACTACAATGTCCACTCCTCCTCCATCT
GGTACACCTACTCCTTCTTTCCAGATCCACCCCAATGGAAACACGGCGAAGTGTTTGGACGTTCAAGGGGATATC
ATTGAGAATGGGACGCCAGTCCAAATGTACGTTTGCATCATAGAGCCGATCGAGCACTTTACTCATACTATGAAA
ATACCAGTTATGATTGCAATGGGACACCTGCCCAGAATTGGATTATTGTACCGGGAGAAGGCCACGTCCAACTGG
CTGCCACTAACCATTGTTTAGATGCTGGTGCTAGTAGGTGTAATAATGCGACCGATTGCGCATCAGTGCTGACAT
CTTATAAATTAGCTCCAGTCGATGGTACTAAAATGAAGATTTGGGAATGTTTCGATAATTTGCCAGCTCAGGATT
GGTTCTACACTGATGACCACAGGATTTCTCTTACCAATCAAGGTAAAAGACCTGATGATATGATGATAACCTCAA
AACTGAGCTGATAAATTTTCTTTCAAGGTTCCTGCCTCGATCTCACCGAGGGTAATTTGACCAATGGAAATGCGG
TACAAGTTTGGAAATGCACCGACTTCAATGCCAACCAAATTTGGAGCGTTTCTAACGGTACTTCTGGTCCAGCTT
GA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail