Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|638950
Gene name
Locationscaffold_05a:494809..496214
Strand+
Gene length (bp)1405
Transcript length (bp)1233
Coding sequence length (bp)1233
Protein length (aa) 411

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00652 Ricin_B_lectin Ricin-type beta-trefoil lectin domain 3.2E-20 281 400
PF14200 RicinB_lectin_2 Ricin-type beta-trefoil lectin domain-like 1.3E-07 273 345

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|O54161|EABF_STRCO Extracellular exo-alpha-L-arabinofuranosidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=abfB PE=1 SV=1 284 406 1.0E-11
sp|P96463|EABF_STRLI Extracellular exo-alpha-L-arabinofuranosidase OS=Streptomyces lividans GN=abfB PE=1 SV=2 284 406 5.0E-11
sp|P26514|XYNA_STRLI Endo-1,4-beta-xylanase A OS=Streptomyces lividans GN=xlnA PE=1 SV=2 270 400 2.0E-09
sp|Q8IZC6|CORA1_HUMAN Collagen alpha-1(XXVII) chain OS=Homo sapiens GN=COL27A1 PE=1 SV=1 16 278 3.0E-07
sp|P22222|E13B_CELCE Glucan endo-1,3-beta-glucosidase OS=Cellulosimicrobium cellulans PE=1 SV=1 282 356 1.0E-06
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|O54161|EABF_STRCO Extracellular exo-alpha-L-arabinofuranosidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=abfB PE=1 SV=1 284 406 1.0E-11
sp|P96463|EABF_STRLI Extracellular exo-alpha-L-arabinofuranosidase OS=Streptomyces lividans GN=abfB PE=1 SV=2 284 406 5.0E-11
sp|P26514|XYNA_STRLI Endo-1,4-beta-xylanase A OS=Streptomyces lividans GN=xlnA PE=1 SV=2 270 400 2.0E-09
sp|Q8IZC6|CORA1_HUMAN Collagen alpha-1(XXVII) chain OS=Homo sapiens GN=COL27A1 PE=1 SV=1 16 278 3.0E-07
sp|P22222|E13B_CELCE Glucan endo-1,3-beta-glucosidase OS=Cellulosimicrobium cellulans PE=1 SV=1 282 356 1.0E-06
sp|Q59146|E13B_ARTSW Glucan endo-1,3-beta-glucosidase OS=Arthrobacter sp. (strain YCWD3) GN=glcI PE=3 SV=1 282 356 1.0E-06
sp|Q8IZC6|CORA1_HUMAN Collagen alpha-1(XXVII) chain OS=Homo sapiens GN=COL27A1 PE=1 SV=1 29 272 2.0E-06
sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus GN=Pkd1l3 PE=1 SV=2 57 264 2.0E-06
sp|Q8N1N5|CRPAK_HUMAN Cysteine-rich PAK1 inhibitor OS=Homo sapiens GN=CRIPAK PE=1 SV=1 49 257 2.0E-06
sp|Q05308|SP1_RARFA Serine protease 1 OS=Rarobacter faecitabidus PE=1 SV=1 139 347 2.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|638950
MHSRNFIRLATLLNVASVVLSAALTFSASTSTVSASSIPASSIPASSSIPAPSSVPVSSSVPATSVPASSSMATT
FTSSVPASSSVPVSSSVPVSSSVPASSSVPVTSVPASSSMATTFTSSVPASSVPVSSSAPASSSIPASSSAPVTS
VPASSSMATTITSSVPASSSIPASSSVPVSSSVPATSVPASSSTVITLTSSVPGSSSPITTITSSAPASSSPVTT
LSSSVPASSSPATTLTSSVPATSSPATSSLPVTTTTTTPPPSGTPTPSFQINPNGNVAKCLDVKGGIVEDGTAVQ
ILDCNGTPSQNWIVTPGEGHVQLAGSNHCLDAGAAPADGTTMKIWECFDNLPAQDWFYTDDQRFALTNQGFCLDL
TNGNATNGNLVQVWGCTDFNANQIWSVSNGTSSSA*
Coding >Agabi119p4|638950
ATGCACTCCAGGAACTTTATTCGCTTGGCCACTTTGCTCAATGTGGCGAGCGTAGTGCTTTCCGCAGCCCTTACC
TTCTCGGCCTCTACCTCTACTGTTTCTGCCTCTTCCATTCCAGCTTCCTCTATACCAGCCTCTTCCTCTATACCA
GCCCCATCTTCTGTACCAGTCTCTTCTTCTGTACCGGCGACTTCGGTCCCCGCCTCCTCAAGTATGGCGACCACA
TTCACCTCCTCAGTCCCAGCCTCTTCTTCTGTACCTGTCTCTTCGTCTGTACCAGTGTCTTCTTCCGTACCAGCG
TCTTCGTCTGTACCAGTGACTTCAGTCCCGGCCTCCTCGAGTATGGCTACCACTTTCACTTCCTCAGTCCCAGCC
TCTTCTGTACCGGTGTCTTCTTCCGCACCCGCGTCTTCATCTATCCCGGCCTCTTCTTCTGCACCAGTGACTTCT
GTCCCGGCCTCCTCGAGTATGGCGACCACAATCACCTCCTCAGTCCCGGCCTCTTCTTCCATCCCAGCTTCTTCG
TCTGTTCCAGTTTCTTCCTCCGTACCAGCGACTTCGGTCCCGGCCTCCTCGAGTACGGTTATCACCTTAACCTCC
TCGGTGCCTGGTTCCTCTAGCCCGATTACTACCATCACCTCGTCGGCGCCAGCTTCATCGAGTCCAGTTACCACC
CTTAGCTCTTCAGTCCCGGCCTCATCGAGCCCGGCTACTACCTTGACCTCTTCGGTCCCAGCCACCTCGAGTCCG
GCTACCTCTTCACTTCCAGTTACCACCACCACCACCACTCCTCCTCCATCTGGTACACCTACTCCTTCTTTCCAA
ATCAACCCCAATGGGAACGTGGCCAAATGTTTAGATGTCAAAGGAGGCATTGTCGAGGACGGGACGGCAGTTCAA
ATCTTGGATTGCAACGGAACTCCCTCTCAGAACTGGATCGTGACACCAGGAGAAGGCCACGTCCAGTTGGCTGGA
AGTAATCACTGTTTGGATGCTGGCGCTGCCCCTGCCGATGGCACCACGATGAAGATTTGGGAGTGTTTCGATAAT
TTGCCAGCTCAAGATTGGTTCTACACAGATGACCAGAGATTTGCTCTCACCAATCAAGGTTTCTGCCTCGATCTC
ACGAATGGCAATGCAACCAATGGAAATTTGGTGCAGGTTTGGGGGTGCACTGACTTTAATGCTAACCAAATCTGG
AGCGTTTCTAACGGTACTTCGAGCTCCGCCTGA
Transcript >Agabi119p4|638950
ATGCACTCCAGGAACTTTATTCGCTTGGCCACTTTGCTCAATGTGGCGAGCGTAGTGCTTTCCGCAGCCCTTACC
TTCTCGGCCTCTACCTCTACTGTTTCTGCCTCTTCCATTCCAGCTTCCTCTATACCAGCCTCTTCCTCTATACCA
GCCCCATCTTCTGTACCAGTCTCTTCTTCTGTACCGGCGACTTCGGTCCCCGCCTCCTCAAGTATGGCGACCACA
TTCACCTCCTCAGTCCCAGCCTCTTCTTCTGTACCTGTCTCTTCGTCTGTACCAGTGTCTTCTTCCGTACCAGCG
TCTTCGTCTGTACCAGTGACTTCAGTCCCGGCCTCCTCGAGTATGGCTACCACTTTCACTTCCTCAGTCCCAGCC
TCTTCTGTACCGGTGTCTTCTTCCGCACCCGCGTCTTCATCTATCCCGGCCTCTTCTTCTGCACCAGTGACTTCT
GTCCCGGCCTCCTCGAGTATGGCGACCACAATCACCTCCTCAGTCCCGGCCTCTTCTTCCATCCCAGCTTCTTCG
TCTGTTCCAGTTTCTTCCTCCGTACCAGCGACTTCGGTCCCGGCCTCCTCGAGTACGGTTATCACCTTAACCTCC
TCGGTGCCTGGTTCCTCTAGCCCGATTACTACCATCACCTCGTCGGCGCCAGCTTCATCGAGTCCAGTTACCACC
CTTAGCTCTTCAGTCCCGGCCTCATCGAGCCCGGCTACTACCTTGACCTCTTCGGTCCCAGCCACCTCGAGTCCG
GCTACCTCTTCACTTCCAGTTACCACCACCACCACCACTCCTCCTCCATCTGGTACACCTACTCCTTCTTTCCAA
ATCAACCCCAATGGGAACGTGGCCAAATGTTTAGATGTCAAAGGAGGCATTGTCGAGGACGGGACGGCAGTTCAA
ATCTTGGATTGCAACGGAACTCCCTCTCAGAACTGGATCGTGACACCAGGAGAAGGCCACGTCCAGTTGGCTGGA
AGTAATCACTGTTTGGATGCTGGCGCTGCCCCTGCCGATGGCACCACGATGAAGATTTGGGAGTGTTTCGATAAT
TTGCCAGCTCAAGATTGGTTCTACACAGATGACCAGAGATTTGCTCTCACCAATCAAGGTTTCTGCCTCGATCTC
ACGAATGGCAATGCAACCAATGGAAATTTGGTGCAGGTTTGGGGGTGCACTGACTTTAATGCTAACCAAATCTGG
AGCGTTTCTAACGGTACTTCGAGCTCCGCCTGA
Gene >Agabi119p4|638950
ATGCACTCCAGGAACTTTATTCGCTTGGCCACTTTGCTCAATGTGGCGAGCGTAGTGCTTTCCGCAGCCCTTACC
TTCTCGGCCTCTACCTCTACTGTTTCTGCCTCTTCCATTCCAGCTTCCTCTATACCAGCCTCTTCCTCTATACCA
GCCCCATCTTCTGTACCAGTCTCTTCTTCTGTACCGGCGACTTCGGTCCCCGCCTCCTCAAGTATGGCGACCACA
TTCACCTCCTCAGTCCCAGCCTCTTCTTCTGTACCTGTCTCTTCGTCTGTACCAGTGTCTTCTTCCGTACCAGCG
TCTTCGTCTGTACCAGTGACTTCAGTCCCGGCCTCCTCGAGTATGGCTACCACTTTCACTTCCTCAGTCCCAGCC
TCTTCTGTACCGGTGTCTTCTTCCGCACCCGCGTCTTCATCTATCCCGGCCTCTTCTTCTGCACCAGTGACTTCT
GTCCCGGCCTCCTCGAGTATGGCGACCACAATCACCTCCTCAGTCCCGGCCTCTTCTTCCATCCCAGCTTCTTCG
TCTGTTCCAGTTTCTTCCTCCGTACCAGCGACTTCGGTCCCGGCCTCCTCGAGTACGGTTATCACCTTAACCTCC
TCGGTGCCTGGTTCCTCTAGCCCGATTACTACCATCACCTCGTCGGCGCCAGCTTCATCGAGTCCAGTTACCACC
CTTAGCTCTTCAGTCCCGGCCTCATCGAGCCCGGCTACTACCTTGACCTCTTCGGTCCCAGCCACCTCGAGTCCG
GCTACCTCTTCACTTCCAGTTACCACCACCACCACCACTCCTCCTCCATCTGGTACACCTACTCCTTCTTTCCAA
ATCAACCCCAATGGGAACGTGGCCAAATGTTTAGATGTCAAAGGAGGCATTGTCGAGGACGGGACGGCAGTTCAA
ATGTATGTTTACAGGAAGTCAATCGAGCACTTTCACTCATACCGTAAATTGACAGCTTGGATTGCAACGGAACTC
CCTCTCAGAACTGGATCGTGACACCAGGAGAAGGCCACGTCCAGTTGGCTGGAAGTAATCACTGTTTGGATGCTG
GCGCTGGTAGGTGTAAAAACGTAACTGATAGCTCCTTCCGTGCTAATAACTCTAACCTATTTAGCCCCTGCCGAT
GGCACCACGATGAAGATTTGGGAGTGTTTCGATAATTTGCCAGCTCAAGATTGGTTCTACACAGATGACCAGAGA
TTTGCTCTCACCAATCAAGGTAAAGACTTGACCATCCGTTAGTGACTATACAGCTGAGAGCTGATAATCTCTTGC
TCAAGGTTTCTGCCTCGATCTCACGAATGGCAATGCAACCAATGGAAATTTGGTGCAGGTTTGGGGGTGCACTGA
CTTTAATGCTAACCAAATCTGGAGCGTTTCTAACGGTACTTCGAGCTCCGCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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