Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|627050
Gene name
Locationscaffold_04:2350773..2352079
Strand+
Gene length (bp)1306
Transcript length (bp)1194
Coding sequence length (bp)1194
Protein length (aa) 398

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.9E-07 1 109

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 1 341 3.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|627050
MWEALEAVHRQKRAGMRFNAYDDLFSIRKLEEESLQSLINRVESSKRKIKELRPSSFTLEQLDDELASMALIRAL
PDEFSGFTLSLLLMDKLDKTTVHQAFVTEDLQRRKRAQDASGSSQALLRFLRERGPQEDAQKPRTPYKRANKAQE
ESGSSSSTQTPEKAQRVTEFAGNASTPYPSPSPSPSTPLQLDADFHWLADTGATSHMTPHRHWFKSYTSHKIPIR
LADNSIVYSSGVGSVVFEPVVNGKVVRAVELTRVLHVPALRSNLLSCLYLARNKGFNITISSHSIDFKHKGTTLF
TATIHSNNSAELDGSTLTSETAFSVSTLPVDLSLWHRRFIHHNYADVKSMIMAVRAFYSSDISTCEHYVQHAENT
VAMTRDHKKRKTYPARQGLALA*
Coding >Agabi119p4|627050
ATGTGGGAGGCTCTAGAGGCTGTACATCGACAGAAAAGGGCTGGAATGCGTTTCAATGCCTATGATGACCTCTTC
TCCATCCGAAAACTCGAGGAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAG
GAGCTCAGACCCTCCTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATTAGAGCGCTC
CCGGACGAGTTTTCGGGCTTCACATTGTCTCTATTGCTTATGGACAAGCTAGATAAGACTACAGTCCATCAGGCC
TTTGTCACTGAGGACTTACAACGTCGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTCCTGCGATTT
CTGCGGGAGAGAGGGCCACAAGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACAAGGCTCAGGAA
GAGTCTGGGAGCTCTAGCTCGACTCAGACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGT
ACTCCTTACCCCTCACCTTCTCCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGAT
ACAGGGGCCACTTCTCATATGACCCCTCACCGCCACTGGTTCAAGTCATATACCAGTCACAAAATCCCCATCCGA
CTAGCTGACAACTCTATTGTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTG
GTCAGAGCAGTCGAGTTGACTAGAGTTTTGCATGTTCCGGCTCTCCGGAGCAATCTACTATCATGTCTATACCTT
GCCCGTAACAAGGGCTTCAATATCACCATCTCCTCTCATTCCATTGACTTCAAACATAAGGGAACAACGCTTTTC
ACGGCCACTATTCATTCCAACAACTCTGCTGAGCTAGACGGCTCAACTCTGACTTCTGAGACTGCTTTCTCTGTC
TCTACCCTCCCGGTTGACCTCTCGCTGTGGCATCGTCGCTTCATTCATCACAACTATGCTGATGTGAAGTCTATG
ATCATGGCTGTTCGAGCCTTCTATTCCAGCGATATAAGTACATGCGAACACTATGTACAACATGCTGAGAATACG
GTTGCCATGACGCGTGACCATAAGAAAAGAAAAACGTATCCTGCGCGACAAGGTCTAGCGCTAGCGTAG
Transcript >Agabi119p4|627050
ATGTGGGAGGCTCTAGAGGCTGTACATCGACAGAAAAGGGCTGGAATGCGTTTCAATGCCTATGATGACCTCTTC
TCCATCCGAAAACTCGAGGAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAG
GAGCTCAGACCCTCCTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATTAGAGCGCTC
CCGGACGAGTTTTCGGGCTTCACATTGTCTCTATTGCTTATGGACAAGCTAGATAAGACTACAGTCCATCAGGCC
TTTGTCACTGAGGACTTACAACGTCGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTCCTGCGATTT
CTGCGGGAGAGAGGGCCACAAGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACAAGGCTCAGGAA
GAGTCTGGGAGCTCTAGCTCGACTCAGACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGT
ACTCCTTACCCCTCACCTTCTCCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGAT
ACAGGGGCCACTTCTCATATGACCCCTCACCGCCACTGGTTCAAGTCATATACCAGTCACAAAATCCCCATCCGA
CTAGCTGACAACTCTATTGTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTG
GTCAGAGCAGTCGAGTTGACTAGAGTTTTGCATGTTCCGGCTCTCCGGAGCAATCTACTATCATGTCTATACCTT
GCCCGTAACAAGGGCTTCAATATCACCATCTCCTCTCATTCCATTGACTTCAAACATAAGGGAACAACGCTTTTC
ACGGCCACTATTCATTCCAACAACTCTGCTGAGCTAGACGGCTCAACTCTGACTTCTGAGACTGCTTTCTCTGTC
TCTACCCTCCCGGTTGACCTCTCGCTGTGGCATCGTCGCTTCATTCATCACAACTATGCTGATGTGAAGTCTATG
ATCATGGCTGTTCGAGCCTTCTATTCCAGCGATATAAGTACATGCGAACACTATGTACAACATGCTGAGAATACG
GTTGCCATGACGCGTGACCATAAGAAAAGAAAAACGTATCCTGCGCGACAAGGTCTAGCGCTAGCGTAG
Gene >Agabi119p4|627050
ATGTGGGAGGCTCTAGAGGCTGTACATCGACAGAAAAGGGCTGGAATGCGTTTCAATGCCTATGATGACCTCTTC
TCCATCCGAAAACTCGAGGAGGAGTCCCTCCAATCCCTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAG
GAGCTCAGACCCTCCTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATTAGAGCGCTC
CCGGACGAGTTTTCGGGCTTCACATTGTCTCTATTGCTTATGGACAAGCTAGATAAGACTACAGTCCATCAGGCC
TTTGTCACTGAGGACTTACAACGTCGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTCCTGCGATTT
CTGCGGGAGAGAGGGCCACAAGTTCGCTGAATGCAAAACCTTCGAGAGAGCGAAGTCCCGGGCACAGGAGGACGC
ACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGCTCTAGCTCGACTCAGAC
TCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGTACTCCTTACCCCTCACCTTCTCCCTCGCC
TTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACTTCTCATATGACCCCTCA
CCGCCACTGGTTCAAGTCATATACCAGTCACAAAATCCCCATCCGACTAGCTGACAACTCTATTGTCTATTCTTC
GGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTGGTCAGAGCAGTCGAGTTGACTAGAGTTTT
GCATGTTCCGGCTCTCCGGAGCAATCTACTATCATGTCTATACCTTGCCCGTAACAAGGGCTTCAATATCACCAT
CTCCTCTCATTCCATTGACTTCAAACATAAGGGAACAACGCTTTTCACGGCCACTATTCATTCCAACAACTCTGC
TGAGCTAGACGGCTCAACTCTGACTTCTGAGACTGCTTTCTCTGTCTCTACCCTCCCGGTTGACCTCTCGCTGTG
GCATCGTCGCTTCATTCATCACAACTATGCTGATGTGAAGTCTATGATCAGTAAGGACCTTGTTTCCGGGCTCAA
ACTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATCAGTGGCTGTTCGAGCCTTCTATTCCAGCGATATAAG
TACATGCGAACACTATGTACAACATGCTGAGAATACGGTTGCCATGACGCGTGACCATAAGAAAAGAAAAACGTA
TCCTGCGCGACAAGGTCTAGCGCTAGCGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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