Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|626200
Gene name
Location	scaffold_04:2309093..2310296
Strand	+
Gene length (bp)	1203
Transcript length (bp)	1203
Coding sequence length (bp)	1203
Protein length (aa)	401

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13976	gag_pre-integrs	GAG-pre-integrase domain	8.6E-11	285	352

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|P10978\|POLX_TOBAC	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1	170	396	1.0E-19
sp\|P04146\|COPIA_DROME	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	170	395	2.0E-11
sp\|P93293\|M300_ARATH	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg00300 PE=4 SV=1	285	377	1.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|626200 MASQSRTHAPYAWDTISTRFGASPTRLRASTLTTTPSGSHTPSPHSLGPISGPKNASIACSFCGRVGHMPRRCRK RKHARKRAQERSRLPGTSKSNVTGPLGHLSGIGAALPAVKTPPTPPGDVSTGSGSPGSDIPLRASALGAYSSPSS SPSSSSSPSLPLQLDADFFWLADTGATSHMTPHRHWFKSYSPHRIPIRLADNSTVYSAGVGSVVFQPVVNGKETR AVEFTRVLHVPDLRSNLLSCLYLARHKGFNITISSHSIDFKLQGRTLFTATIHSNNSAELDGSTVTSETAFSVST LPVDLSLWHRRFIHHNYADVKSMISKDLVSGLKLESNLSPDSICEPCLAGKMHSLPFPSSLNHNRSPLELVHSDL HGPLPVASHSGYKYWITFIDDHIAS*
Coding	>Agabi119p4\|626200 ATGGCCTCGCAATCGCGCACACATGCTCCCTATGCCTGGGACACCATTTCGACGCGTTTTGGCGCGTCTCCGACG CGTCTGAGAGCCTCTACATTGACCACAACTCCCTCTGGCAGCCATACACCCTCTCCACACTCTCTGGGACCGATT TCCGGCCCTAAGAACGCGTCAATCGCTTGTTCCTTTTGTGGGAGGGTAGGGCACATGCCTAGGAGGTGCAGGAAG CGAAAGCACGCGAGAAAACGCGCTCAGGAGCGCTCCAGACTGCCTGGAACATCTAAAAGTAATGTCACAGGGCCA CTTGGCCATCTGAGTGGGATAGGTGCAGCTCTTCCAGCTGTCAAGACACCACCCACTCCTCCTGGGGATGTTTCT ACTGGTTCTGGCTCTCCTGGCTCTGATATTCCTCTGAGAGCATCCGCTCTTGGTGCTTATTCCTCTCCCTCATCC TCTCCCTCATCATCTTCCTCACCATCCTTGCCACTACAGCTTGATGCTGATTTTTTCTGGCTGGCTGATACTGGT GCTACATCCCACATGACTCCTCACCGCCATTGGTTCAAATCCTACTCCCCTCATCGCATCCCTATCCGCCTTGCT GACAACTCTACTGTCTATTCAGCTGGTGTAGGGTCTGTTGTCTTTCAACCAGTGGTGAATGGAAAAGAGACTAGA GCGGTCGAGTTTACAAGAGTCCTTCATGTTCCTGACCTGAGGAGTAATCTCTTATCATGCCTCTACCTTGCCCGA CACAAGGGCTTCAATATCACCATCTCCTCTCACTCTATTGACTTCAAATTGCAAGGGAGAACACTTTTCACGGCC ACTATCCACTCCAACAACTCTGCTGAGCTTGACGGCTCAACTGTGACTTCTGAGACTGCATTCTCTGTCTCTACC CTTCCAGTTGACCTCTCGCTGTGGCATCGTCGCTTCATTCATCACAACTACGCTGATGTGAAGTCAATGATCAGT AAGGATCTAGTTTCCGGGCTCAAACTCGAGTCTAACTTGTCCCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGC AAGATGCATTCCCTTCCCTTTCCCTCCTCCTTGAATCACAATCGCTCTCCTCTTGAGCTAGTGCATTCAGACCTT CACGGACCGCTCCCAGTCGCCTCACACTCAGGCTACAAGTACTGGATCACCTTCATTGACGATCACATCGCTTCT TGA
Transcript	>Agabi119p4\|626200 ATGGCCTCGCAATCGCGCACACATGCTCCCTATGCCTGGGACACCATTTCGACGCGTTTTGGCGCGTCTCCGACG CGTCTGAGAGCCTCTACATTGACCACAACTCCCTCTGGCAGCCATACACCCTCTCCACACTCTCTGGGACCGATT TCCGGCCCTAAGAACGCGTCAATCGCTTGTTCCTTTTGTGGGAGGGTAGGGCACATGCCTAGGAGGTGCAGGAAG CGAAAGCACGCGAGAAAACGCGCTCAGGAGCGCTCCAGACTGCCTGGAACATCTAAAAGTAATGTCACAGGGCCA CTTGGCCATCTGAGTGGGATAGGTGCAGCTCTTCCAGCTGTCAAGACACCACCCACTCCTCCTGGGGATGTTTCT ACTGGTTCTGGCTCTCCTGGCTCTGATATTCCTCTGAGAGCATCCGCTCTTGGTGCTTATTCCTCTCCCTCATCC TCTCCCTCATCATCTTCCTCACCATCCTTGCCACTACAGCTTGATGCTGATTTTTTCTGGCTGGCTGATACTGGT GCTACATCCCACATGACTCCTCACCGCCATTGGTTCAAATCCTACTCCCCTCATCGCATCCCTATCCGCCTTGCT GACAACTCTACTGTCTATTCAGCTGGTGTAGGGTCTGTTGTCTTTCAACCAGTGGTGAATGGAAAAGAGACTAGA GCGGTCGAGTTTACAAGAGTCCTTCATGTTCCTGACCTGAGGAGTAATCTCTTATCATGCCTCTACCTTGCCCGA CACAAGGGCTTCAATATCACCATCTCCTCTCACTCTATTGACTTCAAATTGCAAGGGAGAACACTTTTCACGGCC ACTATCCACTCCAACAACTCTGCTGAGCTTGACGGCTCAACTGTGACTTCTGAGACTGCATTCTCTGTCTCTACC CTTCCAGTTGACCTCTCGCTGTGGCATCGTCGCTTCATTCATCACAACTACGCTGATGTGAAGTCAATGATCAGT AAGGATCTAGTTTCCGGGCTCAAACTCGAGTCTAACTTGTCCCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGC AAGATGCATTCCCTTCCCTTTCCCTCCTCCTTGAATCACAATCGCTCTCCTCTTGAGCTAGTGCATTCAGACCTT CACGGACCGCTCCCAGTCGCCTCACACTCAGGCTACAAGTACTGGATCACCTTCATTGACGATCACATCGCTTCT TGA
Gene	>Agabi119p4\|626200 ATGGCCTCGCAATCGCGCACACATGCTCCCTATGCCTGGGACACCATTTCGACGCGTTTTGGCGCGTCTCCGACG CGTCTGAGAGCCTCTACATTGACCACAACTCCCTCTGGCAGCCATACACCCTCTCCACACTCTCTGGGACCGATT TCCGGCCCTAAGAACGCGTCAATCGCTTGTTCCTTTTGTGGGAGGGTAGGGCACATGCCTAGGAGGTGCAGGAAG CGAAAGCACGCGAGAAAACGCGCTCAGGAGCGCTCCAGACTGCCTGGAACATCTAAAAGTAATGTCACAGGGCCA CTTGGCCATCTGAGTGGGATAGGTGCAGCTCTTCCAGCTGTCAAGACACCACCCACTCCTCCTGGGGATGTTTCT ACTGGTTCTGGCTCTCCTGGCTCTGATATTCCTCTGAGAGCATCCGCTCTTGGTGCTTATTCCTCTCCCTCATCC TCTCCCTCATCATCTTCCTCACCATCCTTGCCACTACAGCTTGATGCTGATTTTTTCTGGCTGGCTGATACTGGT GCTACATCCCACATGACTCCTCACCGCCATTGGTTCAAATCCTACTCCCCTCATCGCATCCCTATCCGCCTTGCT GACAACTCTACTGTCTATTCAGCTGGTGTAGGGTCTGTTGTCTTTCAACCAGTGGTGAATGGAAAAGAGACTAGA GCGGTCGAGTTTACAAGAGTCCTTCATGTTCCTGACCTGAGGAGTAATCTCTTATCATGCCTCTACCTTGCCCGA CACAAGGGCTTCAATATCACCATCTCCTCTCACTCTATTGACTTCAAATTGCAAGGGAGAACACTTTTCACGGCC ACTATCCACTCCAACAACTCTGCTGAGCTTGACGGCTCAACTGTGACTTCTGAGACTGCATTCTCTGTCTCTACC CTTCCAGTTGACCTCTCGCTGTGGCATCGTCGCTTCATTCATCACAACTACGCTGATGTGAAGTCAATGATCAGT AAGGATCTAGTTTCCGGGCTCAAACTCGAGTCTAACTTGTCCCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGC AAGATGCATTCCCTTCCCTTTCCCTCCTCCTTGAATCACAATCGCTCTCCTCTTGAGCTAGTGCATTCAGACCTT CACGGACCGCTCCCAGTCGCCTCACACTCAGGCTACAAGTACTGGATCACCTTCATTGACGATCACATCGCTTCT TGA

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