© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|623850 |
| Gene name | |
| Location | scaffold_04:1533069..1533525 |
| Strand | - |
| Gene length (bp) | 456 |
| Transcript length (bp) | 363 |
| Coding sequence length (bp) | 363 |
| Protein length (aa) | 121 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF17051 | COA2 | Cytochrome C oxidase assembly factor 2 | 6.0E-11 | 45 | 97 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|G2TRM8|COA2_SCHPO | Cytochrome c oxidase assembly factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=coa2 PE=1 SV=1 | 44 | 95 | 4.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0033617 | mitochondrial cytochrome c oxidase assembly | Yes |
| GO:0033108 | mitochondrial respiratory chain complex assembly | No |
| GO:0008535 | respiratory chain complex IV assembly | No |
| GO:0016043 | cellular component organization | No |
| GO:0008150 | biological_process | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0022607 | cellular component assembly | No |
| GO:0017004 | cytochrome complex assembly | No |
| GO:0009987 | cellular process | No |
| GO:0065003 | protein-containing complex assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 23 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 56 | 78 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|623850 MGGYTRTNNFIWFGGTNRKSLSIPSTQLRLWSWALRERVHRMSIYRILRLTQRRAFVSSLFGLTFVAAVVTVSAS SILPCPARRNKDRYLDSNGDRSLVSEGPVNVAKRPRRWIEEKGPC* |
| Coding | >Agabi119p4|623850 ATGGGAGGTTATACAAGAACAAACAACTTCATTTGGTTCGGCGGTACAAACCGGAAAAGTTTGTCTATACCATCC ACACAACTTCGCTTGTGGTCATGGGCATTGCGTGAACGGGTCCATAGGATGTCCATTTACAGAATCCTTCGTCTA ACACAACGTCGTGCATTTGTATCTTCGCTCTTCGGCCTCACTTTCGTTGCTGCTGTCGTCACAGTATCAGCTTCC AGCATATTACCCTGCCCAGCGCGTCGTAACAAAGATAGATATTTGGACAGTAACGGAGATAGGTCACTGGTGTCG GAGGGTCCTGTGAACGTTGCGAAGCGTCCGAGGAGGTGGATAGAAGAGAAAGGACCATGTTAA |
| Transcript | >Agabi119p4|623850 ATGGGAGGTTATACAAGAACAAACAACTTCATTTGGTTCGGCGGTACAAACCGGAAAAGTTTGTCTATACCATCC ACACAACTTCGCTTGTGGTCATGGGCATTGCGTGAACGGGTCCATAGGATGTCCATTTACAGAATCCTTCGTCTA ACACAACGTCGTGCATTTGTATCTTCGCTCTTCGGCCTCACTTTCGTTGCTGCTGTCGTCACAGTATCAGCTTCC AGCATATTACCCTGCCCAGCGCGTCGTAACAAAGATAGATATTTGGACAGTAACGGAGATAGGTCACTGGTGTCG GAGGGTCCTGTGAACGTTGCGAAGCGTCCGAGGAGGTGGATAGAAGAGAAAGGACCATGTTAA |
| Gene | >Agabi119p4|623850 ATGGGAGGTTATACAAGAACAAACAACTTCATTTGGTTCGGCGGTACAAACCGGAAAAGTTTGTCTATACCATCC ACACAACTTCGCGTTTTCCTTGACTTGTCAAGCGCCCTTCTCTATCTAACCTTATAGTTGTGGTCATGGGCATTG CGTGAACGGTTAGTCTTGATCTGCATCCTCAGCCATAATTTAACCGGAAAAAATAGGGTCCATAGGATGTCCATT TACAGAATCCTTCGTCTAACACAACGTCGTGCATTTGTATCTTCGCTCTTCGGCCTCACTTTCGTTGCTGCTGTC GTCACAGTATCAGCTTCCAGCATATTACCCTGCCCAGCGCGTCGTAACAAAGATAGATATTTGGACAGTAACGGA GATAGGTCACTGGTGTCGGAGGGTCCTGTGAACGTTGCGAAGCGTCCGAGGAGGTGGATAGAAGAGAAAGGACCA TGTTAA |