© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|609950 |
| Gene name | |
| Location | scaffold_03b:390285..391461 |
| Strand | + |
| Gene length (bp) | 1176 |
| Transcript length (bp) | 855 |
| Coding sequence length (bp) | 855 |
| Protein length (aa) | 285 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00538 | Linker_histone | linker histone H1 and H5 family | 3.7E-22 | 34 | 106 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P8F8|H1_EMENI | Histone H1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hhoA PE=3 SV=1 | 29 | 106 | 1.0E-08 |
| sp|Q9UV33|H1_ASCIM | Histone H1 OS=Ascobolus immersus PE=3 SV=1 | 34 | 106 | 7.0E-08 |
| sp|Q8J0U2|H1_NEUCR | Histone H1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=hH1 PE=3 SV=1 | 33 | 106 | 1.0E-06 |
| sp|P53551|H1_YEAST | Histone H1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HHO1 PE=1 SV=1 | 37 | 127 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0006334 | nucleosome assembly | Yes |
| GO:0000786 | nucleosome | Yes |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0003674 | molecular_function | No |
| GO:0022607 | cellular component assembly | No |
| GO:0034728 | nucleosome organization | No |
| GO:0044815 | DNA packaging complex | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0032991 | protein-containing complex | No |
| GO:0071824 | protein-DNA complex subunit organization | No |
| GO:0032993 | protein-DNA complex | No |
| GO:0005488 | binding | No |
| GO:0006338 | chromatin remodeling | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005575 | cellular_component | No |
| GO:0009987 | cellular process | No |
| GO:0065004 | protein-DNA complex assembly | No |
| GO:0006325 | chromatin organization | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0008150 | biological_process | No |
| GO:0016043 | cellular component organization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|609950 MARGRKATQSKPVPTVKKPTAARPKPTKATKPSHPPWVDMIKECIIAHPEDARIGVSRPQIKKFVESKYNLEIHT AQVTQLSKALQKGAENNVFLLPKGPSGRVKLTPKVKAVEKENNPAPQPKAAAKPKTAVAPKKAVSAKKPAATKAS AKSTTKAPTKNTTKATATKASAPKSRSTTAAKPASKKAVQTKKAVASKTKAPAAKKTSTASKRGAAKKAVTGTTA PAKAKAAAKATTRKPSAKKPASKPASKPAKPAKSAKPAAKPAAKRSSAKAGTKRKTTSK* |
| Coding | >Agabi119p4|609950 ATGGCTAGAGGCAGGAAAGCGACGCAATCTAAGCCTGTCCCGACCGTGAAGAAGCCTACCGCTGCCAGGCCTAAG CCGACTAAAGCAACCAAACCAAGCCACCCCCCATGGGTAGATATGATCAAAGAATGTATTATCGCCCACCCAGAG GATGCTCGAATTGGCGTTTCACGACCGCAAATCAAGAAGTTCGTAGAATCCAAATACAATCTTGAAATCCATACC GCTCAAGTTACACAACTTTCCAAAGCCCTCCAAAAGGGTGCCGAGAATAACGTCTTCCTACTTCCCAAGGGTCCT TCGGGGCGCGTCAAGCTTACACCCAAAGTCAAAGCTGTAGAGAAAGAGAACAATCCTGCCCCCCAGCCGAAGGCC GCCGCCAAACCTAAAACCGCTGTCGCCCCCAAGAAGGCTGTTTCTGCGAAGAAGCCGGCCGCAACCAAGGCTTCA GCCAAGAGTACAACAAAGGCGCCGACGAAGAATACGACGAAAGCTACTGCCACAAAAGCTTCAGCGCCCAAGAGC AGATCAACGACTGCAGCGAAACCTGCGTCGAAGAAAGCGGTTCAAACTAAGAAGGCTGTTGCGTCGAAGACAAAA GCACCAGCAGCAAAGAAAACAAGCACGGCATCTAAACGAGGGGCTGCTAAGAAGGCTGTTACGGGCACGACAGCC CCTGCAAAAGCAAAAGCTGCTGCAAAAGCCACCACGAGAAAGCCATCCGCGAAGAAGCCCGCATCGAAACCCGCA TCGAAACCTGCGAAACCTGCGAAATCTGCGAAACCCGCTGCGAAACCTGCCGCGAAACGATCTTCAGCAAAGGCG GGGACGAAGAGAAAGACAACAAGCAAGTAG |
| Transcript | >Agabi119p4|609950 ATGGCTAGAGGCAGGAAAGCGACGCAATCTAAGCCTGTCCCGACCGTGAAGAAGCCTACCGCTGCCAGGCCTAAG CCGACTAAAGCAACCAAACCAAGCCACCCCCCATGGGTAGATATGATCAAAGAATGTATTATCGCCCACCCAGAG GATGCTCGAATTGGCGTTTCACGACCGCAAATCAAGAAGTTCGTAGAATCCAAATACAATCTTGAAATCCATACC GCTCAAGTTACACAACTTTCCAAAGCCCTCCAAAAGGGTGCCGAGAATAACGTCTTCCTACTTCCCAAGGGTCCT TCGGGGCGCGTCAAGCTTACACCCAAAGTCAAAGCTGTAGAGAAAGAGAACAATCCTGCCCCCCAGCCGAAGGCC GCCGCCAAACCTAAAACCGCTGTCGCCCCCAAGAAGGCTGTTTCTGCGAAGAAGCCGGCCGCAACCAAGGCTTCA GCCAAGAGTACAACAAAGGCGCCGACGAAGAATACGACGAAAGCTACTGCCACAAAAGCTTCAGCGCCCAAGAGC AGATCAACGACTGCAGCGAAACCTGCGTCGAAGAAAGCGGTTCAAACTAAGAAGGCTGTTGCGTCGAAGACAAAA GCACCAGCAGCAAAGAAAACAAGCACGGCATCTAAACGAGGGGCTGCTAAGAAGGCTGTTACGGGCACGACAGCC CCTGCAAAAGCAAAAGCTGCTGCAAAAGCCACCACGAGAAAGCCATCCGCGAAGAAGCCCGCATCGAAACCCGCA TCGAAACCTGCGAAACCTGCGAAATCTGCGAAACCCGCTGCGAAACCTGCCGCGAAACGATCTTCAGCAAAGGCG GGGACGAAGAGAAAGACAACAAGCAAGTAG |
| Gene | >Agabi119p4|609950 ATGGCTAGAGGCAGGAAAGCGACGCAATCTAAGCCTGTCCCGACCGTGAAGAAGCCTACCGCTGCCAGGCCTAAG CCGACTAAAGCAACCAAACCAAGCCACCCCCCATGGGTAGATATGATCAAAGTTAGTATCGGATCCGAGTATTCG TGTAATATGCGTATCTGTTTTGTCGATCGGACTTACCAAGTCACTTAGGAATGTATTATCGCCCACCCAGAGGAT GCTCGAATTGGCGTTTCACGACCGCAAATCAAGAAGTAAGTTGTGTCAGTGGTTTGTTGTTTTTCTTCTTACCGG TTGTTCCTCTAGGTTCGTAGAATCCAAATACAATCTTGAAATCCATACCGCTCAAGTTACACAACTTTCCAAAGC CCTCCAAAAGGGTGCCGAGAATAACGTCTTCCTACTTCCCAAGGGTAATTATCTTTACTGTGCACTGTTACAAAT GTCTAATTACCGTTTTCAGGTCCTTCGGGGCGCGTCAAGCTTACACCCAAAGTCAAAGCTGTAGAGAAAGAGGTA CTATTAATTATGATGTTTATAATTGTTATTCTGACGATGCGGGAAGAACAATCCTGCCCCCCAGCCGAAGGCCGC CGCCAAACCTAAAACCGCTGTCGCCCCCAAGAAGGCTGTTTCTGCGAAGAAGCCGGCCGCAACCAAGGCTTCAGC CAAGAGTACAACAAAGGCGCCGACGAAGAATACGACGAAAGCTACTGCCACAAAAGCTTCAGCGCCCAAGAGCAG ATCAACGACTGCAGCGAAACCTGCGTCGAAGAAAGCGGTTCAAACTAAGAAGGCTGTTGCGTCGAAGACAAAAGC ACCAGCAGCAAAGAAAACAAGCACGGCATCTAAACGAGGGGCTGCTAAGAAGGTCAGATCGCCCGTTTTATCTTC TCGTTCATCACAAGTGACAGTAAATCAGGCTGTTACGGGCACGACAGCCCCTGCAAAAGCAAAAGCTGCTGCAAA AGCCACCACGAGAAAGCCATCCGCGAAGAAGCCCGCATCGAAACCCGCATCGAAACCTGCGAAACCTGCGAAATC TGCGAAACCCGCTGCGAAACCTGCCGCGAAACGATCTTCAGCAAAGGCGGGGACGAAGAGAAAGGTAAGTTTTAT CTTTTCTTTGCATTCTCATGTCTCAACCAGTCGTAGACAACAAGCAAGTAG |