Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|609050
Gene name
Locationscaffold_03b:145406..146562
Strand+
Gene length (bp)1156
Transcript length (bp)789
Coding sequence length (bp)789
Protein length (aa) 263

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00538 Linker_histone linker histone H1 and H5 family 4.4E-25 28 101

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P53551|H1_YEAST Histone H1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HHO1 PE=1 SV=1 22 120 9.0E-11
sp|Q9UV33|H1_ASCIM Histone H1 OS=Ascobolus immersus PE=3 SV=1 28 100 2.0E-10
sp|Q75C22|H1_ASHGO Histone H1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HHOA PE=3 SV=1 29 104 1.0E-09
sp|Q9P8F8|H1_EMENI Histone H1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hhoA PE=3 SV=1 28 100 5.0E-09
sp|P02259|H5_CHICK Histone H5 OS=Gallus gallus PE=1 SV=2 25 152 1.0E-08
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P53551|H1_YEAST Histone H1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HHO1 PE=1 SV=1 22 120 9.0E-11
sp|Q9UV33|H1_ASCIM Histone H1 OS=Ascobolus immersus PE=3 SV=1 28 100 2.0E-10
sp|Q75C22|H1_ASHGO Histone H1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HHOA PE=3 SV=1 29 104 1.0E-09
sp|Q9P8F8|H1_EMENI Histone H1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hhoA PE=3 SV=1 28 100 5.0E-09
sp|P02259|H5_CHICK Histone H5 OS=Gallus gallus PE=1 SV=2 25 152 1.0E-08
sp|P22844|H10B_XENLA Histone H1.0-B OS=Xenopus laevis GN=h1f0-b PE=1 SV=1 28 96 5.0E-06
sp|Q6NVM0|H10_XENTR Histone H1.0 OS=Xenopus tropicalis GN=h1f0 PE=2 SV=1 28 96 6.0E-06
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GO

GO Term Description Terminal node
GO:0003677 DNA binding Yes
GO:0006334 nucleosome assembly Yes
GO:0000786 nucleosome Yes
GO:0071840 cellular component organization or biogenesis No
GO:0065003 protein-containing complex assembly No
GO:0003674 molecular_function No
GO:0022607 cellular component assembly No
GO:0034728 nucleosome organization No
GO:0044815 DNA packaging complex No
GO:0003676 nucleic acid binding No
GO:0032991 protein-containing complex No
GO:0071824 protein-DNA complex subunit organization No
GO:0032993 protein-DNA complex No
GO:0005488 binding No
GO:0006338 chromatin remodeling No
GO:0097159 organic cyclic compound binding No
GO:0005575 cellular_component No
GO:0009987 cellular process No
GO:0065004 protein-DNA complex assembly No
GO:0006325 chromatin organization No
GO:1901363 heterocyclic compound binding No
GO:0043933 protein-containing complex organization No
GO:0008150 biological_process No
GO:0016043 cellular component organization No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|609050
MPTTLKKTPTKASSRASAAANKSHTAAHPTWIEMIKECIVAHPEESRAGVSRPAIKKFVENKYKIDATATSASQL
NRAITSGSEKGIFQLPKGPSGKVKLAPKAHTDAAKENTKPVTKKPVASVTKPKAATKPAVKKATTTTTKPKATTR
SAAAKKATTGMAAKKAPVKKAVSTNKNAIGKKTTPTTKKAGMARKGAAKKAIVKEAKKPASKTKSRTGATGANTK
AQTKSSMAKPKSVTKAKPASKSKAKPTSKTENKKVAA*
Coding >Agabi119p4|609050
ATGCCTACCACACTCAAAAAGACCCCCACCAAGGCTTCTAGCAGAGCCTCTGCGGCAGCCAACAAGTCCCACACT
GCAGCTCACCCGACATGGATCGAAATGATAAAGGAATGCATCGTTGCGCATCCAGAAGAGTCACGAGCCGGCGTT
TCCAGACCCGCTATCAAGAAGTTTGTCGAAAACAAATACAAGATCGATGCTACCGCTACCTCAGCCAGCCAGCTC
AACCGCGCTATCACGTCGGGCAGCGAGAAGGGCATCTTTCAGCTCCCCAAAGGTCCCTCTGGAAAGGTGAAACTG
GCGCCCAAAGCTCACACCGATGCTGCCAAAGAGAATACTAAACCCGTGACGAAGAAACCTGTAGCAAGCGTCACT
AAACCCAAGGCTGCCACTAAGCCTGCTGTTAAGAAGGCCACTACTACTACCACCAAGCCCAAGGCTACCACCAGG
TCTGCTGCCGCCAAGAAAGCTACGACGGGGATGGCCGCGAAAAAGGCGCCTGTCAAAAAAGCGGTGTCAACGAAC
AAGAATGCAATTGGGAAGAAAACCACTCCCACTACCAAGAAGGCAGGAATGGCAAGGAAAGGTGCTGCTAAGAAG
GCCATTGTTAAAGAGGCGAAGAAGCCTGCCTCGAAGACCAAGTCTAGGACAGGTGCTACCGGTGCGAACACGAAG
GCTCAGACTAAATCTTCGATGGCGAAGCCCAAGTCGGTCACTAAGGCTAAGCCTGCATCCAAGTCAAAGGCGAAA
CCAACTTCCAAGACGGAAAACAAGAAGGTTGCGGCTTGA
Transcript >Agabi119p4|609050
ATGCCTACCACACTCAAAAAGACCCCCACCAAGGCTTCTAGCAGAGCCTCTGCGGCAGCCAACAAGTCCCACACT
GCAGCTCACCCGACATGGATCGAAATGATAAAGGAATGCATCGTTGCGCATCCAGAAGAGTCACGAGCCGGCGTT
TCCAGACCCGCTATCAAGAAGTTTGTCGAAAACAAATACAAGATCGATGCTACCGCTACCTCAGCCAGCCAGCTC
AACCGCGCTATCACGTCGGGCAGCGAGAAGGGCATCTTTCAGCTCCCCAAAGGTCCCTCTGGAAAGGTGAAACTG
GCGCCCAAAGCTCACACCGATGCTGCCAAAGAGAATACTAAACCCGTGACGAAGAAACCTGTAGCAAGCGTCACT
AAACCCAAGGCTGCCACTAAGCCTGCTGTTAAGAAGGCCACTACTACTACCACCAAGCCCAAGGCTACCACCAGG
TCTGCTGCCGCCAAGAAAGCTACGACGGGGATGGCCGCGAAAAAGGCGCCTGTCAAAAAAGCGGTGTCAACGAAC
AAGAATGCAATTGGGAAGAAAACCACTCCCACTACCAAGAAGGCAGGAATGGCAAGGAAAGGTGCTGCTAAGAAG
GCCATTGTTAAAGAGGCGAAGAAGCCTGCCTCGAAGACCAAGTCTAGGACAGGTGCTACCGGTGCGAACACGAAG
GCTCAGACTAAATCTTCGATGGCGAAGCCCAAGTCGGTCACTAAGGCTAAGCCTGCATCCAAGTCAAAGGCGAAA
CCAACTTCCAAGACGGAAAACAAGAAGGTTGCGGCTTGA
Gene >Agabi119p4|609050
ATGCCTACCACACTCAAAAAGACCCCCACCAAGGCTTCTAGCAGAGCCTCTGCGGCAGCCAACAAGTCCCACACT
GCAGCTCACCCGACATGGATCGAAATGATAAAGGTGCGCGCCCACTCATCCAATGACCGTTCTACACTTGTCCTA
AGGTCTCTTCTACCCCTTTCGTCTTCAGGAATGCATCGTTGCGCATCCAGAAGAGTCACGAGCCGGCGTTTCCAG
ACCCGCTATCAAGAAGGCATGTCTCTCAGGTTCCGCATGACGATCATTCTTACTGAACTTGACTAGTTTGTCGAA
AACAAATACAAGATCGATGCTACCGCTACCTCAGCCAGCCAGCTCAACCGCGCTATCACGTCGGGCAGCGAGAAG
GGCATCTTTCAGCTCCCCAAAGGTACGAATTCGTAATTGAACTTGGCTGTGTCTTTCCGGATCCGAAGTATGTCC
GCTTCTGGCAGGTCCCTCTGGAAAGGTGAAACTGGCGCCCAAAGCTCACACCGATGCTGCCAAAGAGGTCCGTTC
ATTTCATTGCTGTCTCACACGCTGTTTGCATGTTGACCGTGGTCCCATCACCATTGTCTTTGTCGATAGAATACT
AAACCCGTGACGAAGAAACCTGTAGCAAGCGTCACTAAACCCAAGGCTGCCACTAAGCCTGCTGTTAAGAAGGCC
ACTACTACTACCACCAAGCCCAAGGCTACCACCAGGTCTGCTGCCGCCAAGAAAGCTACGACGGGGATGGCCGCG
AAAAAGGCGCCTGTCAAAAAAGCGGTGTCAACGAACAAGAATGCAATTGGGAAGAAAACCACTCCCACTACCAAG
AAGGCAGGAATGGCAAGGAAAGGTGCTGCTAAGAAGGTTTGCGTCTCCACTTACACAACGTGTTCTCCGTGAAGT
AACTGGTTTGTCCATAGGCCATTGTTAAAGAGGCGAAGAAGCCTGCCTCGAAGACCAAGTCTAGGACAGGTGCTA
CCGGTGCGAACACGAAGGCTCAGACTAAATCTTCGATGGCGAAGCCCAAGTCGGTCACTAAGGCTAAGCCTGCAT
CCAAGTCAAAGGCGAAACCAACTTCCAAGACGGAAAACAAGGTAGAGTCTGCGTCTCTTTTCGTCGGTCACACCA
ATTGACCCAGGTACAGAAGGTTGCGGCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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