© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|609050 |
| Gene name | |
| Location | scaffold_03b:145406..146562 |
| Strand | + |
| Gene length (bp) | 1156 |
| Transcript length (bp) | 789 |
| Coding sequence length (bp) | 789 |
| Protein length (aa) | 263 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00538 | Linker_histone | linker histone H1 and H5 family | 4.4E-25 | 28 | 101 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53551|H1_YEAST | Histone H1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HHO1 PE=1 SV=1 | 22 | 120 | 9.0E-11 |
| sp|Q9UV33|H1_ASCIM | Histone H1 OS=Ascobolus immersus PE=3 SV=1 | 28 | 100 | 2.0E-10 |
| sp|Q75C22|H1_ASHGO | Histone H1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HHOA PE=3 SV=1 | 29 | 104 | 1.0E-09 |
| sp|Q9P8F8|H1_EMENI | Histone H1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hhoA PE=3 SV=1 | 28 | 100 | 5.0E-09 |
| sp|P02259|H5_CHICK | Histone H5 OS=Gallus gallus PE=1 SV=2 | 25 | 152 | 1.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P53551|H1_YEAST | Histone H1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HHO1 PE=1 SV=1 | 22 | 120 | 9.0E-11 |
| sp|Q9UV33|H1_ASCIM | Histone H1 OS=Ascobolus immersus PE=3 SV=1 | 28 | 100 | 2.0E-10 |
| sp|Q75C22|H1_ASHGO | Histone H1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=HHOA PE=3 SV=1 | 29 | 104 | 1.0E-09 |
| sp|Q9P8F8|H1_EMENI | Histone H1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hhoA PE=3 SV=1 | 28 | 100 | 5.0E-09 |
| sp|P02259|H5_CHICK | Histone H5 OS=Gallus gallus PE=1 SV=2 | 25 | 152 | 1.0E-08 |
| sp|P22844|H10B_XENLA | Histone H1.0-B OS=Xenopus laevis GN=h1f0-b PE=1 SV=1 | 28 | 96 | 5.0E-06 |
| sp|Q6NVM0|H10_XENTR | Histone H1.0 OS=Xenopus tropicalis GN=h1f0 PE=2 SV=1 | 28 | 96 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0006334 | nucleosome assembly | Yes |
| GO:0000786 | nucleosome | Yes |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0003674 | molecular_function | No |
| GO:0022607 | cellular component assembly | No |
| GO:0034728 | nucleosome organization | No |
| GO:0044815 | DNA packaging complex | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0032991 | protein-containing complex | No |
| GO:0071824 | protein-DNA complex subunit organization | No |
| GO:0032993 | protein-DNA complex | No |
| GO:0005488 | binding | No |
| GO:0006338 | chromatin remodeling | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005575 | cellular_component | No |
| GO:0009987 | cellular process | No |
| GO:0065004 | protein-DNA complex assembly | No |
| GO:0006325 | chromatin organization | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0008150 | biological_process | No |
| GO:0016043 | cellular component organization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|609050 MPTTLKKTPTKASSRASAAANKSHTAAHPTWIEMIKECIVAHPEESRAGVSRPAIKKFVENKYKIDATATSASQL NRAITSGSEKGIFQLPKGPSGKVKLAPKAHTDAAKENTKPVTKKPVASVTKPKAATKPAVKKATTTTTKPKATTR SAAAKKATTGMAAKKAPVKKAVSTNKNAIGKKTTPTTKKAGMARKGAAKKAIVKEAKKPASKTKSRTGATGANTK AQTKSSMAKPKSVTKAKPASKSKAKPTSKTENKKVAA* |
| Coding | >Agabi119p4|609050 ATGCCTACCACACTCAAAAAGACCCCCACCAAGGCTTCTAGCAGAGCCTCTGCGGCAGCCAACAAGTCCCACACT GCAGCTCACCCGACATGGATCGAAATGATAAAGGAATGCATCGTTGCGCATCCAGAAGAGTCACGAGCCGGCGTT TCCAGACCCGCTATCAAGAAGTTTGTCGAAAACAAATACAAGATCGATGCTACCGCTACCTCAGCCAGCCAGCTC AACCGCGCTATCACGTCGGGCAGCGAGAAGGGCATCTTTCAGCTCCCCAAAGGTCCCTCTGGAAAGGTGAAACTG GCGCCCAAAGCTCACACCGATGCTGCCAAAGAGAATACTAAACCCGTGACGAAGAAACCTGTAGCAAGCGTCACT AAACCCAAGGCTGCCACTAAGCCTGCTGTTAAGAAGGCCACTACTACTACCACCAAGCCCAAGGCTACCACCAGG TCTGCTGCCGCCAAGAAAGCTACGACGGGGATGGCCGCGAAAAAGGCGCCTGTCAAAAAAGCGGTGTCAACGAAC AAGAATGCAATTGGGAAGAAAACCACTCCCACTACCAAGAAGGCAGGAATGGCAAGGAAAGGTGCTGCTAAGAAG GCCATTGTTAAAGAGGCGAAGAAGCCTGCCTCGAAGACCAAGTCTAGGACAGGTGCTACCGGTGCGAACACGAAG GCTCAGACTAAATCTTCGATGGCGAAGCCCAAGTCGGTCACTAAGGCTAAGCCTGCATCCAAGTCAAAGGCGAAA CCAACTTCCAAGACGGAAAACAAGAAGGTTGCGGCTTGA |
| Transcript | >Agabi119p4|609050 ATGCCTACCACACTCAAAAAGACCCCCACCAAGGCTTCTAGCAGAGCCTCTGCGGCAGCCAACAAGTCCCACACT GCAGCTCACCCGACATGGATCGAAATGATAAAGGAATGCATCGTTGCGCATCCAGAAGAGTCACGAGCCGGCGTT TCCAGACCCGCTATCAAGAAGTTTGTCGAAAACAAATACAAGATCGATGCTACCGCTACCTCAGCCAGCCAGCTC AACCGCGCTATCACGTCGGGCAGCGAGAAGGGCATCTTTCAGCTCCCCAAAGGTCCCTCTGGAAAGGTGAAACTG GCGCCCAAAGCTCACACCGATGCTGCCAAAGAGAATACTAAACCCGTGACGAAGAAACCTGTAGCAAGCGTCACT AAACCCAAGGCTGCCACTAAGCCTGCTGTTAAGAAGGCCACTACTACTACCACCAAGCCCAAGGCTACCACCAGG TCTGCTGCCGCCAAGAAAGCTACGACGGGGATGGCCGCGAAAAAGGCGCCTGTCAAAAAAGCGGTGTCAACGAAC AAGAATGCAATTGGGAAGAAAACCACTCCCACTACCAAGAAGGCAGGAATGGCAAGGAAAGGTGCTGCTAAGAAG GCCATTGTTAAAGAGGCGAAGAAGCCTGCCTCGAAGACCAAGTCTAGGACAGGTGCTACCGGTGCGAACACGAAG GCTCAGACTAAATCTTCGATGGCGAAGCCCAAGTCGGTCACTAAGGCTAAGCCTGCATCCAAGTCAAAGGCGAAA CCAACTTCCAAGACGGAAAACAAGAAGGTTGCGGCTTGA |
| Gene | >Agabi119p4|609050 ATGCCTACCACACTCAAAAAGACCCCCACCAAGGCTTCTAGCAGAGCCTCTGCGGCAGCCAACAAGTCCCACACT GCAGCTCACCCGACATGGATCGAAATGATAAAGGTGCGCGCCCACTCATCCAATGACCGTTCTACACTTGTCCTA AGGTCTCTTCTACCCCTTTCGTCTTCAGGAATGCATCGTTGCGCATCCAGAAGAGTCACGAGCCGGCGTTTCCAG ACCCGCTATCAAGAAGGCATGTCTCTCAGGTTCCGCATGACGATCATTCTTACTGAACTTGACTAGTTTGTCGAA AACAAATACAAGATCGATGCTACCGCTACCTCAGCCAGCCAGCTCAACCGCGCTATCACGTCGGGCAGCGAGAAG GGCATCTTTCAGCTCCCCAAAGGTACGAATTCGTAATTGAACTTGGCTGTGTCTTTCCGGATCCGAAGTATGTCC GCTTCTGGCAGGTCCCTCTGGAAAGGTGAAACTGGCGCCCAAAGCTCACACCGATGCTGCCAAAGAGGTCCGTTC ATTTCATTGCTGTCTCACACGCTGTTTGCATGTTGACCGTGGTCCCATCACCATTGTCTTTGTCGATAGAATACT AAACCCGTGACGAAGAAACCTGTAGCAAGCGTCACTAAACCCAAGGCTGCCACTAAGCCTGCTGTTAAGAAGGCC ACTACTACTACCACCAAGCCCAAGGCTACCACCAGGTCTGCTGCCGCCAAGAAAGCTACGACGGGGATGGCCGCG AAAAAGGCGCCTGTCAAAAAAGCGGTGTCAACGAACAAGAATGCAATTGGGAAGAAAACCACTCCCACTACCAAG AAGGCAGGAATGGCAAGGAAAGGTGCTGCTAAGAAGGTTTGCGTCTCCACTTACACAACGTGTTCTCCGTGAAGT AACTGGTTTGTCCATAGGCCATTGTTAAAGAGGCGAAGAAGCCTGCCTCGAAGACCAAGTCTAGGACAGGTGCTA CCGGTGCGAACACGAAGGCTCAGACTAAATCTTCGATGGCGAAGCCCAAGTCGGTCACTAAGGCTAAGCCTGCAT CCAAGTCAAAGGCGAAACCAACTTCCAAGACGGAAAACAAGGTAGAGTCTGCGTCTCTTTTCGTCGGTCACACCA ATTGACCCAGGTACAGAAGGTTGCGGCTTGA |