Protein ID | Agabi119p4|606100 |
Gene name | |
Location | scaffold_03a:1833065..1833770 |
Strand | + |
Gene length (bp) | 705 |
Transcript length (bp) | 705 |
Coding sequence length (bp) | 705 |
Protein length (aa) | 235 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 1.2E-12 | 38 | 162 |
Orthofinder run ID | 5 |
Orthogroup | 218 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Agabi119p4|606100 MVNGSNNSAWEMSSSPAPPLQSTDPAELQARTLLSAWASAIIKSHLPNSMLSQAAAQTDARALWSWLEGQYGQKG PTFAYECFVTAQNFKINDSADPLSAIADLYALFAAVESTGALIHKSIRTMMLLNALPNRFEHVASNILAEKRSVA NLKWEETRARIIVAWRNPHTVANAACFHQQNQPRPKWDNKKPDQGQGKSQGSGSGSGSGQNQNKQQQNQQKKEGE QQSDDKEKK* |
Coding | >Agabi119p4|606100 ATGGTCAATGGCTCCAATAATTCGGCCTGGGAAATGAGCAGTTCCCCTGCTCCTCCCTTGCAAAGCACAGACCCA GCTGAGTTACAAGCTCGCACTCTGCTCTCGGCCTGGGCATCTGCAATTATCAAGTCCCACCTTCCAAATTCGATG CTCAGTCAAGCAGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGCTGGAAGGCCAGTACGGCCAGAAAGGA CCAACATTCGCTTACGAGTGTTTTGTCACAGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCATTGTCTGCG ATCGCAGATCTCTACGCATTATTTGCCGCTGTCGAGAGCACCGGTGCGTTGATCCACAAATCGATCCGCACCATG ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGGTCGGTTGCC AATCTTAAATGGGAGGAAACTCGTGCCCGCATCATTGTTGCATGGCGCAACCCCCATACAGTTGCTAATGCTGCG TGTTTCCACCAGCAAAACCAGCCGAGACCCAAATGGGACAATAAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA GGCTCTGGTTCTGGTTCTGGCTCCGGCCAGAATCAAAATAAGCAACAACAAAATCAGCAGAAGAAGGAAGGCGAG CAGCAGAGTGACGACAAGGAGAAGAAGTAA |
Transcript | >Agabi119p4|606100 ATGGTCAATGGCTCCAATAATTCGGCCTGGGAAATGAGCAGTTCCCCTGCTCCTCCCTTGCAAAGCACAGACCCA GCTGAGTTACAAGCTCGCACTCTGCTCTCGGCCTGGGCATCTGCAATTATCAAGTCCCACCTTCCAAATTCGATG CTCAGTCAAGCAGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGCTGGAAGGCCAGTACGGCCAGAAAGGA CCAACATTCGCTTACGAGTGTTTTGTCACAGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCATTGTCTGCG ATCGCAGATCTCTACGCATTATTTGCCGCTGTCGAGAGCACCGGTGCGTTGATCCACAAATCGATCCGCACCATG ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGGTCGGTTGCC AATCTTAAATGGGAGGAAACTCGTGCCCGCATCATTGTTGCATGGCGCAACCCCCATACAGTTGCTAATGCTGCG TGTTTCCACCAGCAAAACCAGCCGAGACCCAAATGGGACAATAAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA GGCTCTGGTTCTGGTTCTGGCTCCGGCCAGAATCAAAATAAGCAACAACAAAATCAGCAGAAGAAGGAAGGCGAG CAGCAGAGTGACGACAAGGAGAAGAAGTAA |
Gene | >Agabi119p4|606100 ATGGTCAATGGCTCCAATAATTCGGCCTGGGAAATGAGCAGTTCCCCTGCTCCTCCCTTGCAAAGCACAGACCCA GCTGAGTTACAAGCTCGCACTCTGCTCTCGGCCTGGGCATCTGCAATTATCAAGTCCCACCTTCCAAATTCGATG CTCAGTCAAGCAGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGCTGGAAGGCCAGTACGGCCAGAAAGGA CCAACATTCGCTTACGAGTGTTTTGTCACAGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCATTGTCTGCG ATCGCAGATCTCTACGCATTATTTGCCGCTGTCGAGAGCACCGGTGCGTTGATCCACAAATCGATCCGCACCATG ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGGTCGGTTGCC AATCTTAAATGGGAGGAAACTCGTGCCCGCATCATTGTTGCATGGCGCAACCCCCATACAGTTGCTAATGCTGCG TGTTTCCACCAGCAAAACCAGCCGAGACCCAAATGGGACAATAAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA GGCTCTGGTTCTGGTTCTGGCTCCGGCCAGAATCAAAATAAGCAACAACAAAATCAGCAGAAGAAGGAAGGCGAG CAGCAGAGTGACGACAAGGAGAAGAAGTAA |