Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|606100
Gene name
Location	scaffold_03a:1833065..1833770
Strand	+
Gene length (bp)	705
Transcript length (bp)	705
Coding sequence length (bp)	705
Protein length (aa)	235

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	1.2E-12	38	162

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 57	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|606100 MVNGSNNSAWEMSSSPAPPLQSTDPAELQARTLLSAWASAIIKSHLPNSMLSQAAAQTDARALWSWLEGQYGQKG PTFAYECFVTAQNFKINDSADPLSAIADLYALFAAVESTGALIHKSIRTMMLLNALPNRFEHVASNILAEKRSVA NLKWEETRARIIVAWRNPHTVANAACFHQQNQPRPKWDNKKPDQGQGKSQGSGSGSGSGQNQNKQQQNQQKKEGE QQSDDKEKK*
Coding	>Agabi119p4\|606100 ATGGTCAATGGCTCCAATAATTCGGCCTGGGAAATGAGCAGTTCCCCTGCTCCTCCCTTGCAAAGCACAGACCCA GCTGAGTTACAAGCTCGCACTCTGCTCTCGGCCTGGGCATCTGCAATTATCAAGTCCCACCTTCCAAATTCGATG CTCAGTCAAGCAGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGCTGGAAGGCCAGTACGGCCAGAAAGGA CCAACATTCGCTTACGAGTGTTTTGTCACAGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCATTGTCTGCG ATCGCAGATCTCTACGCATTATTTGCCGCTGTCGAGAGCACCGGTGCGTTGATCCACAAATCGATCCGCACCATG ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGGTCGGTTGCC AATCTTAAATGGGAGGAAACTCGTGCCCGCATCATTGTTGCATGGCGCAACCCCCATACAGTTGCTAATGCTGCG TGTTTCCACCAGCAAAACCAGCCGAGACCCAAATGGGACAATAAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA GGCTCTGGTTCTGGTTCTGGCTCCGGCCAGAATCAAAATAAGCAACAACAAAATCAGCAGAAGAAGGAAGGCGAG CAGCAGAGTGACGACAAGGAGAAGAAGTAA
Transcript	>Agabi119p4\|606100 ATGGTCAATGGCTCCAATAATTCGGCCTGGGAAATGAGCAGTTCCCCTGCTCCTCCCTTGCAAAGCACAGACCCA GCTGAGTTACAAGCTCGCACTCTGCTCTCGGCCTGGGCATCTGCAATTATCAAGTCCCACCTTCCAAATTCGATG CTCAGTCAAGCAGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGCTGGAAGGCCAGTACGGCCAGAAAGGA CCAACATTCGCTTACGAGTGTTTTGTCACAGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCATTGTCTGCG ATCGCAGATCTCTACGCATTATTTGCCGCTGTCGAGAGCACCGGTGCGTTGATCCACAAATCGATCCGCACCATG ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGGTCGGTTGCC AATCTTAAATGGGAGGAAACTCGTGCCCGCATCATTGTTGCATGGCGCAACCCCCATACAGTTGCTAATGCTGCG TGTTTCCACCAGCAAAACCAGCCGAGACCCAAATGGGACAATAAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA GGCTCTGGTTCTGGTTCTGGCTCCGGCCAGAATCAAAATAAGCAACAACAAAATCAGCAGAAGAAGGAAGGCGAG CAGCAGAGTGACGACAAGGAGAAGAAGTAA
Gene	>Agabi119p4\|606100 ATGGTCAATGGCTCCAATAATTCGGCCTGGGAAATGAGCAGTTCCCCTGCTCCTCCCTTGCAAAGCACAGACCCA GCTGAGTTACAAGCTCGCACTCTGCTCTCGGCCTGGGCATCTGCAATTATCAAGTCCCACCTTCCAAATTCGATG CTCAGTCAAGCAGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGCTGGAAGGCCAGTACGGCCAGAAAGGA CCAACATTCGCTTACGAGTGTTTTGTCACAGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCATTGTCTGCG ATCGCAGATCTCTACGCATTATTTGCCGCTGTCGAGAGCACCGGTGCGTTGATCCACAAATCGATCCGCACCATG ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGGTCGGTTGCC AATCTTAAATGGGAGGAAACTCGTGCCCGCATCATTGTTGCATGGCGCAACCCCCATACAGTTGCTAATGCTGCG TGTTTCCACCAGCAAAACCAGCCGAGACCCAAATGGGACAATAAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA GGCTCTGGTTCTGGTTCTGGCTCCGGCCAGAATCAAAATAAGCAACAACAAAATCAGCAGAAGAAGGAAGGCGAG CAGCAGAGTGACGACAAGGAGAAGAAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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