Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|606100
Gene name
Locationscaffold_03a:1833065..1833770
Strand+
Gene length (bp)705
Transcript length (bp)705
Coding sequence length (bp)705
Protein length (aa) 235

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 1.2E-12 38 162

Swissprot hits

(None)

GO

(None)

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID5
Orthogroup218
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|082250
Agaricus bisporus var bisporus H97 AgabiH97|082250
Agaricus bisporus var burnettii H119p4 Agabi119p4|564700
Agaricus bisporus var burnettii H119p4 Agabi119p4|606100 (this protein)
Agaricus bisporus var burnettii H119p4 Agabi119p4|637100
Agaricus bisporus var burnettii H119p4 Agabi119p4|770150
Agaricus bisporus var burnettii H119p4 Agabi119p4|770800

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|606100
MVNGSNNSAWEMSSSPAPPLQSTDPAELQARTLLSAWASAIIKSHLPNSMLSQAAAQTDARALWSWLEGQYGQKG
PTFAYECFVTAQNFKINDSADPLSAIADLYALFAAVESTGALIHKSIRTMMLLNALPNRFEHVASNILAEKRSVA
NLKWEETRARIIVAWRNPHTVANAACFHQQNQPRPKWDNKKPDQGQGKSQGSGSGSGSGQNQNKQQQNQQKKEGE
QQSDDKEKK*
Coding >Agabi119p4|606100
ATGGTCAATGGCTCCAATAATTCGGCCTGGGAAATGAGCAGTTCCCCTGCTCCTCCCTTGCAAAGCACAGACCCA
GCTGAGTTACAAGCTCGCACTCTGCTCTCGGCCTGGGCATCTGCAATTATCAAGTCCCACCTTCCAAATTCGATG
CTCAGTCAAGCAGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGCTGGAAGGCCAGTACGGCCAGAAAGGA
CCAACATTCGCTTACGAGTGTTTTGTCACAGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCATTGTCTGCG
ATCGCAGATCTCTACGCATTATTTGCCGCTGTCGAGAGCACCGGTGCGTTGATCCACAAATCGATCCGCACCATG
ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGGTCGGTTGCC
AATCTTAAATGGGAGGAAACTCGTGCCCGCATCATTGTTGCATGGCGCAACCCCCATACAGTTGCTAATGCTGCG
TGTTTCCACCAGCAAAACCAGCCGAGACCCAAATGGGACAATAAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA
GGCTCTGGTTCTGGTTCTGGCTCCGGCCAGAATCAAAATAAGCAACAACAAAATCAGCAGAAGAAGGAAGGCGAG
CAGCAGAGTGACGACAAGGAGAAGAAGTAA
Transcript >Agabi119p4|606100
ATGGTCAATGGCTCCAATAATTCGGCCTGGGAAATGAGCAGTTCCCCTGCTCCTCCCTTGCAAAGCACAGACCCA
GCTGAGTTACAAGCTCGCACTCTGCTCTCGGCCTGGGCATCTGCAATTATCAAGTCCCACCTTCCAAATTCGATG
CTCAGTCAAGCAGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGCTGGAAGGCCAGTACGGCCAGAAAGGA
CCAACATTCGCTTACGAGTGTTTTGTCACAGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCATTGTCTGCG
ATCGCAGATCTCTACGCATTATTTGCCGCTGTCGAGAGCACCGGTGCGTTGATCCACAAATCGATCCGCACCATG
ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGGTCGGTTGCC
AATCTTAAATGGGAGGAAACTCGTGCCCGCATCATTGTTGCATGGCGCAACCCCCATACAGTTGCTAATGCTGCG
TGTTTCCACCAGCAAAACCAGCCGAGACCCAAATGGGACAATAAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA
GGCTCTGGTTCTGGTTCTGGCTCCGGCCAGAATCAAAATAAGCAACAACAAAATCAGCAGAAGAAGGAAGGCGAG
CAGCAGAGTGACGACAAGGAGAAGAAGTAA
Gene >Agabi119p4|606100
ATGGTCAATGGCTCCAATAATTCGGCCTGGGAAATGAGCAGTTCCCCTGCTCCTCCCTTGCAAAGCACAGACCCA
GCTGAGTTACAAGCTCGCACTCTGCTCTCGGCCTGGGCATCTGCAATTATCAAGTCCCACCTTCCAAATTCGATG
CTCAGTCAAGCAGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGCTGGAAGGCCAGTACGGCCAGAAAGGA
CCAACATTCGCTTACGAGTGTTTTGTCACAGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCATTGTCTGCG
ATCGCAGATCTCTACGCATTATTTGCCGCTGTCGAGAGCACCGGTGCGTTGATCCACAAATCGATCCGCACCATG
ATGCTCCTCAACGCTCTCCCCAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGGTCGGTTGCC
AATCTTAAATGGGAGGAAACTCGTGCCCGCATCATTGTTGCATGGCGCAACCCCCATACAGTTGCTAATGCTGCG
TGTTTCCACCAGCAAAACCAGCCGAGACCCAAATGGGACAATAAAAAACCCGATCAAGGTCAGGGTAAGTCCCAA
GGCTCTGGTTCTGGTTCTGGCTCCGGCCAGAATCAAAATAAGCAACAACAAAATCAGCAGAAGAAGGAAGGCGAG
CAGCAGAGTGACGACAAGGAGAAGAAGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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