© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|602150 |
| Gene name | |
| Location | scaffold_03a:940294..940954 |
| Strand | + |
| Gene length (bp) | 660 |
| Transcript length (bp) | 660 |
| Coding sequence length (bp) | 660 |
| Protein length (aa) | 220 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07823 | CPDase | Cyclic phosphodiesterase-like protein | 4.3E-18 | 28 | 217 |
| PF13563 | 2_5_RNA_ligase2 | 2'-5' RNA ligase superfamily | 1.9E-09 | 44 | 160 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O04147|CPD_ARATH | Cyclic phosphodiesterase OS=Arabidopsis thaliana GN=At4g18930 PE=1 SV=1 | 27 | 161 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004112 | cyclic-nucleotide phosphodiesterase activity | Yes |
| GO:0016787 | hydrolase activity | No |
| GO:0042578 | phosphoric ester hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0008081 | phosphoric diester hydrolase activity | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 39 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|602150 MDKSFSKPSSSNVETVHRLITQLAAQFGLWIMPPRNVAEDLKEIMNIRRDRPYSADTYPRFEPHITLAAIKSDTP ISLSTIRESIPTAQRAFPVKFESVNIGDHYFRSVYASIKLDEALLDLHKTLHENLDKVPKTPKYPHMSLVYVSDE DAVEGEREKYYEELKERQLIAAASSGGVQLRVSPEKEWIGGFLAAEIWVMRCVGPVESWEVLDKIALPH* |
| Coding | >Agabi119p4|602150 ATGGACAAGTCGTTCAGTAAGCCGAGTTCTTCCAACGTGGAAACTGTACACAGGCTTATCACACAACTGGCAGCC CAGTTCGGTCTCTGGATCATGCCTCCTCGCAACGTGGCAGAAGATCTCAAAGAAATCATGAACATTCGAAGAGAC CGACCTTACTCAGCCGACACCTATCCTCGTTTTGAACCCCATATTACTCTCGCAGCCATCAAATCTGACACACCT ATTTCATTATCGACTATTCGCGAATCGATACCCACTGCCCAGCGTGCGTTTCCAGTCAAATTTGAATCAGTCAAC ATTGGCGACCATTATTTTCGCTCGGTCTATGCTTCTATAAAGTTAGACGAGGCTTTGTTGGATTTGCACAAGACT TTGCATGAAAACCTGGATAAAGTTCCAAAAACACCAAAGTATCCTCATATGTCACTTGTGTATGTGAGTGATGAG GATGCGGTGGAGGGAGAAAGGGAGAAATACTACGAGGAGCTGAAAGAGAGACAATTAATAGCTGCTGCCTCGAGT GGAGGTGTACAACTACGTGTCAGCCCTGAGAAAGAGTGGATTGGCGGGTTTCTTGCTGCAGAGATCTGGGTTATG AGGTGTGTCGGACCAGTTGAGAGTTGGGAAGTTCTAGATAAGATTGCCCTTCCTCACTAA |
| Transcript | >Agabi119p4|602150 ATGGACAAGTCGTTCAGTAAGCCGAGTTCTTCCAACGTGGAAACTGTACACAGGCTTATCACACAACTGGCAGCC CAGTTCGGTCTCTGGATCATGCCTCCTCGCAACGTGGCAGAAGATCTCAAAGAAATCATGAACATTCGAAGAGAC CGACCTTACTCAGCCGACACCTATCCTCGTTTTGAACCCCATATTACTCTCGCAGCCATCAAATCTGACACACCT ATTTCATTATCGACTATTCGCGAATCGATACCCACTGCCCAGCGTGCGTTTCCAGTCAAATTTGAATCAGTCAAC ATTGGCGACCATTATTTTCGCTCGGTCTATGCTTCTATAAAGTTAGACGAGGCTTTGTTGGATTTGCACAAGACT TTGCATGAAAACCTGGATAAAGTTCCAAAAACACCAAAGTATCCTCATATGTCACTTGTGTATGTGAGTGATGAG GATGCGGTGGAGGGAGAAAGGGAGAAATACTACGAGGAGCTGAAAGAGAGACAATTAATAGCTGCTGCCTCGAGT GGAGGTGTACAACTACGTGTCAGCCCTGAGAAAGAGTGGATTGGCGGGTTTCTTGCTGCAGAGATCTGGGTTATG AGGTGTGTCGGACCAGTTGAGAGTTGGGAAGTTCTAGATAAGATTGCCCTTCCTCACTAA |
| Gene | >Agabi119p4|602150 ATGGACAAGTCGTTCAGTAAGCCGAGTTCTTCCAACGTGGAAACTGTACACAGGCTTATCACACAACTGGCAGCC CAGTTCGGTCTCTGGATCATGCCTCCTCGCAACGTGGCAGAAGATCTCAAAGAAATCATGAACATTCGAAGAGAC CGACCTTACTCAGCCGACACCTATCCTCGTTTTGAACCCCATATTACTCTCGCAGCCATCAAATCTGACACACCT ATTTCATTATCGACTATTCGCGAATCGATACCCACTGCCCAGCGTGCGTTTCCAGTCAAATTTGAATCAGTCAAC ATTGGCGACCATTATTTTCGCTCGGTCTATGCTTCTATAAAGTTAGACGAGGCTTTGTTGGATTTGCACAAGACT TTGCATGAAAACCTGGATAAAGTTCCAAAAACACCAAAGTATCCTCATATGTCACTTGTGTATGTGAGTGATGAG GATGCGGTGGAGGGAGAAAGGGAGAAATACTACGAGGAGCTGAAAGAGAGACAATTAATAGCTGCTGCCTCGAGT GGAGGTGTACAACTACGTGTCAGCCCTGAGAAAGAGTGGATTGGCGGGTTTCTTGCTGCAGAGATCTGGGTTATG AGGTGTGTCGGACCAGTTGAGAGTTGGGAAGTTCTAGATAAGATTGCCCTTCCTCACTAA |