Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|602050
Gene name
Locationscaffold_03a:921223..922681
Strand+
Gene length (bp)1458
Transcript length (bp)1203
Coding sequence length (bp)1203
Protein length (aa) 401

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00400 WD40 WD domain, G-beta repeat 7.9E-03 45 81
PF00400 WD40 WD domain, G-beta repeat 1.3E-01 152 177

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P78774|ARPC1_SCHPO Actin-related protein 2/3 complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc1 PE=1 SV=3 4 383 6.0E-128
sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A OS=Mus musculus GN=Arpc1a PE=1 SV=1 1 400 2.0E-120
sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A OS=Rattus norvegicus GN=Arpc1a PE=2 SV=1 1 400 5.0E-120
sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens GN=ARPC1A PE=1 SV=2 1 400 1.0E-118
sp|Q1JP79|ARC1A_BOVIN Actin-related protein 2/3 complex subunit 1A OS=Bos taurus GN=ARPC1A PE=2 SV=1 1 400 6.0E-118
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Swissprot ID Swissprot Description Start End E-value
sp|P78774|ARPC1_SCHPO Actin-related protein 2/3 complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arc1 PE=1 SV=3 4 383 6.0E-128
sp|Q9R0Q6|ARC1A_MOUSE Actin-related protein 2/3 complex subunit 1A OS=Mus musculus GN=Arpc1a PE=1 SV=1 1 400 2.0E-120
sp|Q99PD4|ARC1A_RAT Actin-related protein 2/3 complex subunit 1A OS=Rattus norvegicus GN=Arpc1a PE=2 SV=1 1 400 5.0E-120
sp|Q92747|ARC1A_HUMAN Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens GN=ARPC1A PE=1 SV=2 1 400 1.0E-118
sp|Q1JP79|ARC1A_BOVIN Actin-related protein 2/3 complex subunit 1A OS=Bos taurus GN=ARPC1A PE=2 SV=1 1 400 6.0E-118
sp|O15143|ARC1B_HUMAN Actin-related protein 2/3 complex subunit 1B OS=Homo sapiens GN=ARPC1B PE=1 SV=3 12 390 4.0E-108
sp|Q9WV32|ARC1B_MOUSE Actin-related protein 2/3 complex subunit 1B OS=Mus musculus GN=Arpc1b PE=1 SV=4 12 400 1.0E-107
sp|O88656|ARC1B_RAT Actin-related protein 2/3 complex subunit 1B OS=Rattus norvegicus GN=Arpc1b PE=1 SV=3 12 390 4.0E-107
sp|Q58CQ2|ARC1B_BOVIN Actin-related protein 2/3 complex subunit 1B OS=Bos taurus GN=ARPC1B PE=1 SV=4 12 390 2.0E-104
sp|O96622|ARPC1_DICDI Actin-related protein 2/3 complex subunit 1 OS=Dictyostelium discoideum GN=arcA PE=1 SV=1 13 394 5.0E-103
sp|P38328|ARPC1_YEAST Actin-related protein 2/3 complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC40 PE=1 SV=1 5 383 1.0E-82
sp|Q9SJW6|ARC1B_ARATH Actin-related protein 2/3 complex subunit 1B OS=Arabidopsis thaliana GN=ARPC1B PE=2 SV=1 13 393 2.0E-70
sp|O80856|ARC1A_ARATH Actin-related protein 2/3 complex subunit 1A OS=Arabidopsis thaliana GN=ARPC1A PE=2 SV=1 13 393 4.0E-68
sp|Q99KN2|CIAO1_MOUSE Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Mus musculus GN=Ciao1 PE=1 SV=1 36 237 1.0E-08
sp|B5X9P2|CIO1A_SALSA Probable cytosolic iron-sulfur protein assembly protein ciao1-A OS=Salmo salar GN=ciao1a PE=2 SV=1 34 242 2.0E-08
sp|Q5M7T1|CIAO1_RAT Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Rattus norvegicus GN=Ciao1 PE=2 SV=1 36 237 2.0E-08
sp|Q32PJ6|CIAO1_BOVIN Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Bos taurus GN=CIAO1 PE=2 SV=1 34 237 2.0E-08
sp|Q32PJ6|CIAO1_BOVIN Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Bos taurus GN=CIAO1 PE=2 SV=1 36 203 2.0E-08
sp|O76071|CIAO1_HUMAN Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Homo sapiens GN=CIAO1 PE=1 SV=1 36 237 2.0E-08
sp|Q5M7T1|CIAO1_RAT Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Rattus norvegicus GN=Ciao1 PE=2 SV=1 34 237 8.0E-08
sp|Q99KN2|CIAO1_MOUSE Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Mus musculus GN=Ciao1 PE=1 SV=1 34 237 9.0E-08
sp|O76071|CIAO1_HUMAN Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Homo sapiens GN=CIAO1 PE=1 SV=1 34 237 1.0E-07
sp|B5X212|CIO1B_SALSA Probable cytosolic iron-sulfur protein assembly protein ciao1-B OS=Salmo salar GN=ciao1b PE=2 SV=1 34 237 1.0E-07
sp|B5X9P2|CIO1A_SALSA Probable cytosolic iron-sulfur protein assembly protein ciao1-A OS=Salmo salar GN=ciao1a PE=2 SV=1 32 184 3.0E-07
sp|B5X212|CIO1B_SALSA Probable cytosolic iron-sulfur protein assembly protein ciao1-B OS=Salmo salar GN=ciao1b PE=2 SV=1 36 237 5.0E-07
sp|Q5M7T1|CIAO1_RAT Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Rattus norvegicus GN=Ciao1 PE=2 SV=1 9 180 7.0E-07
sp|Q99KN2|CIAO1_MOUSE Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Mus musculus GN=Ciao1 PE=1 SV=1 9 180 1.0E-06
sp|B5X9P2|CIO1A_SALSA Probable cytosolic iron-sulfur protein assembly protein ciao1-A OS=Salmo salar GN=ciao1a PE=2 SV=1 36 259 1.0E-06
sp|B3RNR8|CIAO1_TRIAD Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Trichoplax adhaerens GN=TRIADDRAFT_20668 PE=3 SV=1 34 237 5.0E-06
sp|A7RWD2|CIAO1_NEMVE Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Nematostella vectensis GN=v1g226592 PE=3 SV=1 23 177 7.0E-06
sp|Q6P0D9|CIAO1_DANRE Probable cytosolic iron-sulfur protein assembly protein ciao1 OS=Danio rerio GN=ciao1 PE=2 SV=1 25 171 9.0E-06
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GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID5
Orthogroup7935
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|056280
Agaricus bisporus var bisporus H97 AgabiH97|056280
Agaricus bisporus var burnettii H119p4 Agabi119p4|602050 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|602050
MSPEVFSLSQTPITAHAFSADRKDIAVSLNSNDVQLYTRKGSDWTPTETLSEHDKLITSIDWAPVSNRIVTASQD
RNAYVWTETTDAETGKLIWKPTLVLLRINRAATHVRWSPLENKFAVASGARAIAVCSFDEESNWWVAKHLKKPIR
STVLSVEWHPNNVLLAAGSADMKARVFSGYIKEVDERPAPSVWGSKLPFNTICGEYSSPAGGWVHAVGFSPSGDA
LAFASHDSSITIVYPGGPAIYTIRSPSLPLVTLAWTSEESIVAAGHDCKPLVYAGSEQGWQEVGTLDDSSSSRAS
EGSRSGFGSSSSVGRLKAGAFATFRDADSRGQSSLSGTATGLSDTKLNTIHQNTILSVRPYEVQGGYVTKVSTSA
VDGTLVIWDTNEVSALAGKMGGVRI*
Coding >Agabi119p4|602050
ATGTCGCCTGAAGTCTTCAGTCTGTCTCAGACTCCCATCACCGCACACGCGTTTAGTGCGGATCGCAAAGATATC
GCCGTCAGCCTAAACAGTAACGACGTTCAACTTTACACGAGAAAGGGCTCGGACTGGACCCCAACAGAGACGCTG
TCTGAGCACGACAAACTGATCACCTCGATCGATTGGGCTCCTGTATCTAACCGCATCGTCACCGCTTCTCAAGAC
AGGAATGCGTATGTTTGGACGGAGACCACAGATGCAGAGACTGGCAAGTTGATTTGGAAGCCGACACTCGTATTG
CTGAGAATCAATCGCGCTGCCACTCATGTTCGTTGGAGCCCCTTAGAAAATAAGTTCGCCGTTGCCAGTGGTGCG
AGAGCGATCGCTGTATGTTCTTTCGATGAAGAGAGCAATTGGTGGGTTGCCAAACACCTCAAGAAACCCATCCGA
TCTACGGTCTTGTCTGTGGAATGGCATCCCAATAATGTTCTGCTGGCAGCTGGTAGTGCTGACATGAAAGCGCGT
GTATTCTCTGGTTATATCAAAGAAGTAGACGAGCGACCAGCTCCCAGTGTCTGGGGTTCCAAATTACCATTCAAT
ACCATTTGCGGAGAATACTCATCTCCTGCAGGAGGATGGGTTCATGCCGTTGGTTTTTCTCCTTCCGGAGACGCC
CTTGCTTTTGCCAGTCACGACAGTTCCATTACAATCGTTTATCCCGGTGGTCCAGCTATCTACACTATCCGCTCT
CCGTCACTCCCTTTGGTCACATTAGCTTGGACCTCTGAAGAGTCAATTGTGGCTGCCGGCCACGACTGCAAACCC
CTAGTTTATGCAGGCTCGGAACAAGGATGGCAAGAAGTTGGAACATTGGACGACTCGTCATCTTCCCGAGCGTCC
GAAGGATCTCGCTCTGGCTTTGGGAGTAGCAGCAGCGTTGGCCGACTCAAAGCAGGTGCATTTGCTACCTTCCGC
GATGCCGATAGCCGTGGCCAATCGTCTCTAAGTGGTACCGCCACCGGCCTTTCCGATACCAAGCTCAACACAATT
CACCAGAATACAATCCTCAGCGTCCGACCCTATGAAGTTCAAGGTGGTTATGTGACTAAAGTTAGCACCTCCGCT
GTTGATGGTACGCTAGTCATCTGGGATACCAATGAAGTCAGCGCATTGGCTGGAAAGATGGGTGGCGTAAGGATT
TAG
Transcript >Agabi119p4|602050
ATGTCGCCTGAAGTCTTCAGTCTGTCTCAGACTCCCATCACCGCACACGCGTTTAGTGCGGATCGCAAAGATATC
GCCGTCAGCCTAAACAGTAACGACGTTCAACTTTACACGAGAAAGGGCTCGGACTGGACCCCAACAGAGACGCTG
TCTGAGCACGACAAACTGATCACCTCGATCGATTGGGCTCCTGTATCTAACCGCATCGTCACCGCTTCTCAAGAC
AGGAATGCGTATGTTTGGACGGAGACCACAGATGCAGAGACTGGCAAGTTGATTTGGAAGCCGACACTCGTATTG
CTGAGAATCAATCGCGCTGCCACTCATGTTCGTTGGAGCCCCTTAGAAAATAAGTTCGCCGTTGCCAGTGGTGCG
AGAGCGATCGCTGTATGTTCTTTCGATGAAGAGAGCAATTGGTGGGTTGCCAAACACCTCAAGAAACCCATCCGA
TCTACGGTCTTGTCTGTGGAATGGCATCCCAATAATGTTCTGCTGGCAGCTGGTAGTGCTGACATGAAAGCGCGT
GTATTCTCTGGTTATATCAAAGAAGTAGACGAGCGACCAGCTCCCAGTGTCTGGGGTTCCAAATTACCATTCAAT
ACCATTTGCGGAGAATACTCATCTCCTGCAGGAGGATGGGTTCATGCCGTTGGTTTTTCTCCTTCCGGAGACGCC
CTTGCTTTTGCCAGTCACGACAGTTCCATTACAATCGTTTATCCCGGTGGTCCAGCTATCTACACTATCCGCTCT
CCGTCACTCCCTTTGGTCACATTAGCTTGGACCTCTGAAGAGTCAATTGTGGCTGCCGGCCACGACTGCAAACCC
CTAGTTTATGCAGGCTCGGAACAAGGATGGCAAGAAGTTGGAACATTGGACGACTCGTCATCTTCCCGAGCGTCC
GAAGGATCTCGCTCTGGCTTTGGGAGTAGCAGCAGCGTTGGCCGACTCAAAGCAGGTGCATTTGCTACCTTCCGC
GATGCCGATAGCCGTGGCCAATCGTCTCTAAGTGGTACCGCCACCGGCCTTTCCGATACCAAGCTCAACACAATT
CACCAGAATACAATCCTCAGCGTCCGACCCTATGAAGTTCAAGGTGGTTATGTGACTAAAGTTAGCACCTCCGCT
GTTGATGGTACGCTAGTCATCTGGGATACCAATGAAGTCAGCGCATTGGCTGGAAAGATGGGTGGCGTAAGGATT
TAG
Gene >Agabi119p4|602050
ATGTCGCCTGAAGTCTTCAGTCTGTCTCAGACTCCCATCACCGCACACGCGTTTAGTGCGGATCGCAAAGGTTCA
CTTAACCTCTACGTCTCCACTACAACCTTTGACCTTTCTCCAGATATCGCCGTCAGCCTAAACAGTAACGACGTT
CAACTTTACACGAGAAAGGGCTCGGACTGGACCCCAACAGAGACGCTGTCTGAGGTACTGTCTGATATTCGCCGC
CTCTTTTCTTGGAACTAACAGTCAATCTCAGCACGACAAACTGATCACCTCGATCGATTGGGCTCCTGTATCTAA
CCGCATCGTCACCGCTTCTCAAGACAGGAATGCGTATGTTTGGACGGAGACCACAGATGCAGAGACTGGCAAGTT
GATTTGGAAGCCGACACTCGTATTGCTGAGAATCAATCGCGCTGCCACTCATGTTCGTTGGAGCCCCTTAGAAAA
TAAGTTCGCCGTTGCCAGTGGTGCGAGGTGCGTATATATTTATCAATGTCTGGTATGAAGTGCTCAAGCGAGGAT
GTATTCAGAGCGATCGCTGTATGTTCTTTCGATGAAGAGAGCAATTGGTGGGTTGCCAAACACCTCAAGAAACCC
ATCCGATCTACGGTCTTGTCTGTGGAATGGCATCCCAATAATGTTCTGCTGGCAGCTGGTAGTGCTGACATGAAA
GCGCGTGTATTCTCTGGTTATATCAAAGAAGTAGACGAGCGGTAAGGATTGAAAGTATTGGTCTCGATACACATT
AATGTTTCTTCTAGACCAGCTCCCAGTGTCTGGGGTTCCAAATTACCATTCAATACCATTTGCGGAGAATACTCA
TCTCCTGCAGGAGGATGGGTTCATGCCGTTGGTTTTTCTCCTTCCGGAGACGCCCTTGCTTTTGCCAGTTCGTCC
TACCTCTACGCTTAACGTTGTCAAAATTTTTGATGGTTTATAGGTCACGACAGTTCCATTACAATCGTTTATCCC
GGTGGTCCAGCTATCTACACTATCCGCTCTCCGTCACTCCCTTTGGTCACATTAGCTTGGACCTCTGAAGAGTCA
ATTGTGGCTGCCGGCCACGACTGCAAACCCCTAGTTTATGCAGGCTCGGAACAAGGATGGCAAGAAGTTGGAACA
TTGGACGACTCGTCATCTTCCCGAGCGTCCGAAGGATCTCGCTCTGGCTTTGGGAGTAGCAGCAGCGTTGGCCGA
CTCAAAGCAGGTGCATTTGCTACCTTCCGCGATGCCGATAGCCGTGGCCAATCGTCTCTAAGTGGTACCGCCACC
GGCCTTTCCGATACCAAGCTCAACACAATTCACCAGAATACAATCCTCAGCGTCCGACCCTATGAAGTTCAAGGT
GGTTATGTGACTAAAGTTAGCACCTCCGCTGTTGATGGTACGCTAGTCATCTGGGATACCAATGAAGTCAGCGCA
TTGGCTGGAAAGATGGGTGGCGTAAGGATTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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