Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|594150
Gene name
Locationscaffold_02:3122568..3123190
Strand-
Gene length (bp)622
Transcript length (bp)405
Coding sequence length (bp)405
Protein length (aa) 135

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P83811|CAP_COPCM Antiviral protein CAP (Fragment) OS=Coprinus comatus PE=1 SV=1 37 126 2.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|594150
MFSKYLVASTLIAVAVAQAPLQCYQGLPTSAGPATDCSRFVNTFCDAAAAVPAVRINDSVSRCFNLPDAKVCDFI
AWNTFTRNVPPSAANCKSVLNRVISQCVLGGYGQAGANAYTFTVDVNHGQCGHDVHGGS*
Coding >Agabi119p4|594150
ATGTTTTCCAAATATCTTGTTGCATCTACTCTCATCGCTGTTGCGGTGGCTCAAGCACCTCTCCAGTGCTACCAA
GGCTTACCCACTTCTGCGGGTCCCGCAACTGACTGTTCCCGATTTGTGAACACCTTTTGCGACGCGGCTGCCGCT
GTCCCTGCGGTACGCATTAACGATTCAGTCAGTCGTTGCTTCAATTTACCAGATGCCAAAGTTTGCGATTTCATT
GCATGGAACACATTCACGCGCAATGTTCCGCCTTCAGCGGCTAATTGCAAATCCGTGCTGAACAGAGTTATTTCT
CAATGCGTATTGGGAGGTTATGGACAGGCTGGGGCCAATGCGTATACTTTCACGGTTGACGTCAACCATGGACAG
TGTGGCCATGATGTCCATGGTGGATCCTAG
Transcript >Agabi119p4|594150
ATGTTTTCCAAATATCTTGTTGCATCTACTCTCATCGCTGTTGCGGTGGCTCAAGCACCTCTCCAGTGCTACCAA
GGCTTACCCACTTCTGCGGGTCCCGCAACTGACTGTTCCCGATTTGTGAACACCTTTTGCGACGCGGCTGCCGCT
GTCCCTGCGGTACGCATTAACGATTCAGTCAGTCGTTGCTTCAATTTACCAGATGCCAAAGTTTGCGATTTCATT
GCATGGAACACATTCACGCGCAATGTTCCGCCTTCAGCGGCTAATTGCAAATCCGTGCTGAACAGAGTTATTTCT
CAATGCGTATTGGGAGGTTATGGACAGGCTGGGGCCAATGCGTATACTTTCACGGTTGACGTCAACCATGGACAG
TGTGGCCATGATGTCCATGGTGGATCCTAG
Gene >Agabi119p4|594150
ATGTTTTCCAAAGTCGTATTTTCTAAGATGATGGTCAATGCTCAACCTACTAATCATGGGCATTTATAGTATCTT
GTTGCATCTACTCTCATCGCTGTTGCGGTGGCTCAAGCACCTCTCCAGTGCTACCAAGGCTTACCCACTTCTGCG
GGTCCCGCAACTGACTGTTCCCGATTTGTGAACACCTTTTGCGACGCGGCTGCCGCTGTCCCTGCGGTAAGTCAG
CATTTCCCGAAGCTGCCCGGCCATTTTTTGATGTTCTCCTCTAGGTACGCATTAACGATTCAGTCAGTCGTTGCT
TCAATTTACCAGATGCCAAAGTTTGTGAGTATGCATGACATCCCTCAATGTATCAGATACTGCATGACATATATA
GGCGATTTCATTGCATGGAACACATTCACGCGCAATGTTCCGCCTTCAGCGGCTAATTGCAAATCCGTGCTGAAC
AGAGTTATTTCTCAATGCGTATTGGTAAAATTCATGCGCTCAAATTCTCGCTGCCGGAGTTGGCTGACGACAAAT
CTAGGGAGGTTATGGACAGGCTGGGGCCAATGCGTATACTTTCACGGTTGACGTCAACCATGGACAGTGTGGCCA
TGATGTCCATGGTGGATCCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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