Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|593950
Gene name
Locationscaffold_02:3113949..3114347
Strand+
Gene length (bp)398
Transcript length (bp)225
Coding sequence length (bp)225
Protein length (aa) 75

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01476 LysM LysM domain 5.0E-12 28 73

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|593950
MFSKALLTTIVCAFVASVQGQACTGPIYTVVTGDSCFTIGQQFGVTAAAIIAANPGVNAGCTNLIPGQGLCIPL*
Coding >Agabi119p4|593950
ATGTTCTCCAAAGCTCTCCTCACCACCATCGTCTGTGCCTTCGTCGCATCCGTTCAAGGTCAAGCTTGTACCGGG
CCCATCTACACCGTCGTCACTGGCGATAGTTGCTTCACCATCGGGCAGCAATTCGGTGTCACGGCTGCTGCGATC
ATTGCCGCGAACCCAGGCGTCAACGCTGGGTGCACCAACTTGATTCCCGGTCAGGGGCTTTGCATTCCCCTCTGA
Transcript >Agabi119p4|593950
ATGTTCTCCAAAGCTCTCCTCACCACCATCGTCTGTGCCTTCGTCGCATCCGTTCAAGGTCAAGCTTGTACCGGG
CCCATCTACACCGTCGTCACTGGCGATAGTTGCTTCACCATCGGGCAGCAATTCGGTGTCACGGCTGCTGCGATC
ATTGCCGCGAACCCAGGCGTCAACGCTGGGTGCACCAACTTGATTCCCGGTCAGGGGCTTTGCATTCCCCTCTGA
Gene >Agabi119p4|593950
ATGTTCTCCAAAGCTCTCCTCACCACCATCGTCTGTGCCTTCGTCGGTAAGTCAGCGACACGGCTGACAGTCAAA
CACAGCTGACTCGAGATTGATGTTATAGCATCCGTTCAAGGTCAAGCTTGTACCGGGCCCATCTACACCGTCGTC
ACTGGCGATAGTTGCTTCACCATCGGGCAGCAATTCGGTGTCACGGCGTCAGTACTCATACGCCCCCACTGCAGC
CGTTGAACACGAAACTGATTTAGTGTCTTAGTGCTGCGATCATTGCCGCGAACCCAGGCGTCAACGCTGGGTGCA
CCAACTTGATTCCCGGTCAGGTCAGCATCTTCAGCCACTTTTTTGACATTTGTTGCTCAATCCGTAAAAATCACC
AGGGGCTTTGCATTCCCCTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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