Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|584100
Gene name
Location	scaffold_02:1830380..1831303
Strand	+
Gene length (bp)	923
Transcript length (bp)	696
Coding sequence length (bp)	696
Protein length (aa)	232

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF04099	Sybindin	Sybindin-like family	1.0E-20	3	186

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UT70\|BET5_SCHPO	Transport protein particle subunit bet5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2	1	185	2.0E-22
sp\|Q2KMM2\|TPPC1_RAT	Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1	89	186	3.0E-17
sp\|Q5NCF2\|TPPC1_MOUSE	Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1	89	186	3.0E-17
sp\|Q9Y5R8\|TPPC1_HUMAN	Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1	89	186	3.0E-16
sp\|Q17QI1\|TPPC1_BOVIN	Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1	89	186	3.0E-16

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9UT70\|BET5_SCHPO	Transport protein particle subunit bet5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2	1	185	2.0E-22
sp\|Q2KMM2\|TPPC1_RAT	Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1	89	186	3.0E-17
sp\|Q5NCF2\|TPPC1_MOUSE	Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1	89	186	3.0E-17
sp\|Q9Y5R8\|TPPC1_HUMAN	Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1	89	186	3.0E-16
sp\|Q17QI1\|TPPC1_BOVIN	Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1	89	186	3.0E-16
sp\|Q557G3\|TPPC1_DICDI	Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1	106	185	4.0E-15
sp\|Q03630\|BET5_YEAST	Trafficking protein particle complex subunit BET5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET5 PE=1 SV=1	105	186	5.0E-10

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GO

GO Term	Description	Terminal node
GO:0016192	vesicle-mediated transport	Yes
GO:0030008	TRAPP complex	Yes
GO:0099023	vesicle tethering complex	No
GO:0032991	protein-containing complex	No
GO:0051179	localization	No
GO:0051234	establishment of localization	No
GO:0140535	intracellular protein-containing complex	No
GO:0008150	biological_process	No
GO:0006810	transport	No
GO:0005575	cellular_component	No

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 19	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|584100 MTIYSLYIFDRHCTCVYYQDWHRTQRLKPAAEGNILPAVSQAVTPAAAPEKMASSASALGSPRNTLSSSTGIVVA MNDNAARSTPPPPLSATPQQQPSSATLPFDEETKLVYGVVLSLRNMIKKLSGRDESFTSYRTSTYKLHLHETTSG YKFVMLTDPKSDSLRPILRQLYAGPFVEYVVRNPLAYSRTFNICITNDKNLFRNPEKSRDIPLCMRRLPALPLEL LPQHRH*
Coding	>Agabi119p4\|584100 ATGACGATCTATAGCCTCTATATTTTTGACCGTCACTGCACCTGCGTTTATTATCAGGATTGGCATCGCACTCAA CGTCTCAAGCCAGCTGCCGAAGGCAACATATTGCCTGCTGTTTCCCAAGCAGTCACACCTGCAGCGGCACCGGAG AAGATGGCTTCAAGCGCTTCAGCATTGGGCAGCCCACGGAACACTCTTTCGTCGTCGACTGGAATCGTTGTCGCG ATGAACGACAATGCAGCACGTTCCACGCCCCCACCGCCACTCTCGGCCACTCCTCAGCAACAGCCATCATCAGCA ACACTTCCGTTTGACGAAGAGACGAAGCTGGTGTACGGTGTTGTTCTCTCTCTCAGAAATATGATCAAGAAGCTG TCAGGCCGGGACGAATCCTTCACAAGCTATCGAACCTCTACGTACAAACTACATCTCCATGAAACAACCTCAGGA TACAAGTTCGTCATGTTAACGGACCCTAAGTCCGACTCCCTTCGTCCCATCCTGCGGCAGCTTTATGCGGGTCCT TTCGTGGAGTATGTTGTTCGGAACCCTTTGGCTTATTCGAGGACTTTCAATATTTGCATAACGAATGACAAAAAT TTATTCCGAAATCCTGAAAAAAGTCGAGATATTCCATTATGTATGCGGCGTCTCCCCGCCTTGCCTCTCGAACTG CTGCCTCAGCACCGTCATTAA
Transcript	>Agabi119p4\|584100 ATGACGATCTATAGCCTCTATATTTTTGACCGTCACTGCACCTGCGTTTATTATCAGGATTGGCATCGCACTCAA CGTCTCAAGCCAGCTGCCGAAGGCAACATATTGCCTGCTGTTTCCCAAGCAGTCACACCTGCAGCGGCACCGGAG AAGATGGCTTCAAGCGCTTCAGCATTGGGCAGCCCACGGAACACTCTTTCGTCGTCGACTGGAATCGTTGTCGCG ATGAACGACAATGCAGCACGTTCCACGCCCCCACCGCCACTCTCGGCCACTCCTCAGCAACAGCCATCATCAGCA ACACTTCCGTTTGACGAAGAGACGAAGCTGGTGTACGGTGTTGTTCTCTCTCTCAGAAATATGATCAAGAAGCTG TCAGGCCGGGACGAATCCTTCACAAGCTATCGAACCTCTACGTACAAACTACATCTCCATGAAACAACCTCAGGA TACAAGTTCGTCATGTTAACGGACCCTAAGTCCGACTCCCTTCGTCCCATCCTGCGGCAGCTTTATGCGGGTCCT TTCGTGGAGTATGTTGTTCGGAACCCTTTGGCTTATTCGAGGACTTTCAATATTTGCATAACGAATGACAAAAAT TTATTCCGAAATCCTGAAAAAAGTCGAGATATTCCATTATGTATGCGGCGTCTCCCCGCCTTGCCTCTCGAACTG CTGCCTCAGCACCGTCATTAA
Gene	>Agabi119p4\|584100 ATGACGATCTATAGCCTCTATATTTTTGACCGGTGCGTCTGTGGTAAACCCAGCGGTATCAGGCAGAGTCCAATC TAAGTTCTAGTCACTGCACCTGCGTTTATTATCAGGATTGGCATCGCACTCAACGTCTCAAGCCAGCTGCCGAAG GCAACATATTGCCTGCTGTTTCCCAAGCAGTCACACCTGCAGCGGCACCGGAGAAGATGGCTTCAAGCGCTTCAG CATTGGGCAGCCCACGGAACACTCTTTCGTCGTCGACTGGAATCGTTGTCGCGATGAACGACAATGCAGCACGTT CCACGCCCCCACCGCCACTCTCGGCCACTCCTCAGCAACAGCCATCATCAGCAACACTTCCGTTTGACGAAGAGA CGAAGCTGGTGTACGGTGTTGTTCTCTCTCTCAGAAATATGATCAAGAAGCTGTCAGGCCGGTGCGTGTCTACTT TCTCTCGTATTGTTAGCAGGCCAAACTGATAAATAGTCTTATAGGGACGAATCCTTCACAAGCTATCGAACCTCT ACGTACAAACTACATCTCCATGAAACAACCTCAGGATACAAGTTCGTCATGTTAACGGACCCTAAGTCCGACTCC CTTCGTCCCATCCTGCGGCAGCTTTATGCGGGTCCTTTCGTGGAGTATGTTGTTCGGAACCCTTTGGTGAAGATG GATTCTAAGGAACACGGCATTGACAATGAATACTTCCGAACCAGTATTGATAGGCTTATTCGAGGACTTTCAATA TTTGCATAACGAATGACAAAAATTTATTCCGAAATCCTGAAAAAAGTCGAGGTACAAACCTACGACAAAATGATA GTCTACGTCACCAATATGCAACTTCCATAGATATTCCATTATGTATGCGGCGTCTCCCCGCCTTGCCTCTCGAAC TGCTGCCTCAGCACCGTCATTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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