Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|583750
Gene name
Locationscaffold_02:1636779..1639741
Strand+
Gene length (bp)2962
Transcript length (bp)2079
Coding sequence length (bp)2079
Protein length (aa) 693

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04082 Fungal_trans Fungal specific transcription factor domain 2.0E-09 307 477
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 5.2E-07 136 173

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P38781|RSC30_YEAST Chromatin structure-remodeling complex protein RSC30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC30 PE=1 SV=2 137 175 3.0E-06

GO

GO Term Description Terminal node
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0008270 zinc ion binding Yes
GO:0003677 DNA binding Yes
GO:0006351 transcription, DNA-templated Yes
GO:0065007 biological regulation No
GO:0019222 regulation of metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0009059 macromolecule biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0005488 binding No
GO:0009889 regulation of biosynthetic process No
GO:0140110 transcription regulator activity No
GO:0044238 primary metabolic process No
GO:0044271 cellular nitrogen compound biosynthetic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0046872 metal ion binding No
GO:0006725 cellular aromatic compound metabolic process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0090304 nucleic acid metabolic process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0003676 nucleic acid binding No
GO:0031323 regulation of cellular metabolic process No
GO:0097659 nucleic acid-templated transcription No
GO:0044249 cellular biosynthetic process No
GO:0008152 metabolic process No
GO:0032774 RNA biosynthetic process No
GO:0003674 molecular_function No
GO:0018130 heterocycle biosynthetic process No
GO:0080090 regulation of primary metabolic process No
GO:0010468 regulation of gene expression No
GO:0008150 biological_process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0046914 transition metal ion binding No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0050789 regulation of biological process No
GO:0043170 macromolecule metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0043167 ion binding No
GO:0044237 cellular metabolic process No
GO:0003700 DNA-binding transcription factor activity No
GO:0019438 aromatic compound biosynthetic process No
GO:1901362 organic cyclic compound biosynthetic process No
GO:0071704 organic substance metabolic process No
GO:0050794 regulation of cellular process No
GO:0016070 RNA metabolic process No
GO:0009987 cellular process No
GO:0051252 regulation of RNA metabolic process No
GO:2001141 regulation of RNA biosynthetic process No
GO:0009058 biosynthetic process No
GO:0097159 organic cyclic compound binding No
GO:0034654 nucleobase-containing compound biosynthetic process No
GO:0043169 cation binding No
GO:1903506 regulation of nucleic acid-templated transcription No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|583750
MGARANQRSAKKHMDERTMLRSEEKSEQGREIARADRGRQDGQKRPGWEREKLGRGREAGDGGLAEVGGGGGEQR
QGGCRARVAAGRESERDGRIGKAAVPRNIHLILLSYIYIFPLMANKQPADKSAQTTLQRGKACLRCRKRKMKCDG
VKPACQQCVRAKKPDACEYDDGKGKTRTQLMRETILRLERRVRELEDPEYVSPAVTLYDPHGHSRSGSSASSVDS
PDGSFLSVPHSPFPSGSPSSPAAAWTRNVPSPSPTPFLSEMFFEEPRSYLHMSPDLGSILLDIFAPHQQQCGLGI
DIHQLRESLHRNPSERSHPVLLNAIYLWACFVSRPEPLCQNEDHYLRLVLETLPDALKSTDKLVDAIQASCLLSM
YYLANGRMCEGGYHASAAAALAVQAGLGRNAFQNDLWPPACSFEDFDLKPAKTAPQDDARIMSFWQIFSLDRCWS
VFLQRPSIIPDGPDARNVISCPWPQDLGSYETGLISGCSPLPTVRAFLNGDVSSGGFSAIVLRAKASALFAQADA
VANLAGMKQNGRFADEVTALDHTISLFLSMLLPINQLNQVMPEERQSLILAHTLANCAVLHLHRASAHGDSVSFE
KCSHAVRACVNVMRQITEQDYPFLDPVLAPCWSSISDHLVVELDTMESAWPSMNVSEIRDELSTILQAMTIFATR
YPVITPDLNRLRKRLMS*
Coding >Agabi119p4|583750
ATGGGCGCGCGAGCTAATCAACGAAGCGCGAAGAAACACATGGATGAGAGAACGATGTTGAGAAGCGAGGAAAAG
AGTGAACAGGGCCGGGAAATTGCGAGGGCGGACCGGGGGAGGCAGGACGGGCAGAAAAGGCCGGGCTGGGAGAGG
GAGAAGCTTGGCAGAGGAAGAGAGGCGGGGGACGGAGGGCTGGCGGAGGTGGGTGGCGGGGGTGGAGAGCAGCGG
CAGGGAGGGTGCCGAGCGAGGGTGGCTGCTGGGCGAGAGAGCGAGAGGGACGGCCGGATTGGGAAGGCGGCTGTG
CCCAGGAACATACATCTGATCCTCCTATCTTATATATATATTTTTCCATTAATGGCCAATAAACAACCTGCCGAC
AAGTCTGCACAGACCACCCTCCAGAGGGGCAAGGCCTGTCTTCGCTGCAGAAAGCGGAAAATGAAATGTGACGGT
GTCAAGCCAGCTTGCCAGCAGTGCGTACGTGCAAAGAAGCCCGACGCTTGCGAATACGACGATGGAAAGGGCAAG
ACTCGCACTCAGCTCATGCGTGAGACCATCCTACGCCTCGAACGTCGCGTCCGAGAACTCGAGGATCCCGAGTAC
GTATCCCCCGCTGTAACCCTCTACGACCCCCATGGACATTCCCGCTCTGGGTCCTCCGCTTCCTCTGTCGATTCC
CCGGACGGTTCTTTTCTATCAGTCCCCCATTCTCCGTTCCCTTCTGGTTCCCCTTCGTCTCCTGCTGCTGCTTGG
ACCCGGAATGTGCCTTCTCCCTCCCCTACACCTTTCCTATCCGAGATGTTTTTCGAGGAGCCACGGTCCTATCTC
CACATGTCGCCAGATTTGGGTTCGATACTGCTTGATATATTTGCTCCACATCAACAACAGTGCGGCCTCGGCATC
GATATTCATCAATTACGTGAATCCCTACATCGGAATCCTTCAGAACGGTCCCATCCCGTCCTACTCAATGCAATC
TACCTTTGGGCCTGCTTTGTTTCCCGACCAGAACCGCTATGCCAAAACGAAGATCACTATCTTCGCCTCGTCTTG
GAGACGTTACCTGATGCGCTCAAGTCTACCGATAAACTCGTTGATGCCATTCAAGCCTCCTGCCTTCTATCAATG
TATTACCTTGCGAATGGAAGGATGTGCGAGGGGGGTTACCATGCTAGCGCCGCTGCCGCCTTAGCCGTCCAGGCG
GGTCTGGGTCGGAATGCCTTTCAAAATGATCTCTGGCCTCCAGCCTGCAGCTTCGAGGACTTTGATCTAAAACCT
GCCAAGACTGCACCCCAGGACGACGCGCGAATAATGTCATTCTGGCAGATCTTTAGCCTCGACCGCTGTTGGTCT
GTATTCCTTCAAAGGCCCTCAATCATTCCCGATGGCCCCGACGCTAGGAACGTTATCAGCTGCCCGTGGCCCCAG
GATCTTGGCAGTTATGAAACAGGGCTTATCAGTGGATGCTCTCCCCTTCCTACTGTTCGAGCTTTCTTGAATGGG
GATGTATCATCCGGTGGATTCTCAGCAATAGTACTTCGAGCTAAAGCGTCAGCACTTTTTGCTCAAGCTGATGCA
GTCGCTAACCTTGCTGGAATGAAGCAGAATGGAAGATTCGCTGACGAAGTGACAGCTCTAGACCATACTATCTCC
CTTTTCCTTTCAATGCTCCTACCGATCAATCAGCTGAATCAGGTTATGCCCGAAGAAAGACAGAGTTTAATTTTA
GCTCATACTTTGGCCAATTGTGCAGTCCTTCACCTTCACCGTGCTTCTGCTCATGGAGATTCTGTTTCCTTTGAG
AAATGCTCTCATGCAGTTCGAGCATGCGTAAATGTAATGAGGCAAATCACCGAACAGGATTACCCGTTCTTGGAT
CCTGTCCTCGCGCCATGCTGGTCAAGCATCTCCGACCACCTTGTCGTGGAGCTTGACACCATGGAATCTGCCTGG
CCATCGATGAATGTCAGCGAAATACGTGATGAACTCAGCACGATCCTCCAAGCTATGACTATCTTCGCTACTCGA
TATCCCGTCATAACACCGGATTTGAACAGGCTTCGGAAACGATTAATGTCATGA
Transcript >Agabi119p4|583750
ATGGGCGCGCGAGCTAATCAACGAAGCGCGAAGAAACACATGGATGAGAGAACGATGTTGAGAAGCGAGGAAAAG
AGTGAACAGGGCCGGGAAATTGCGAGGGCGGACCGGGGGAGGCAGGACGGGCAGAAAAGGCCGGGCTGGGAGAGG
GAGAAGCTTGGCAGAGGAAGAGAGGCGGGGGACGGAGGGCTGGCGGAGGTGGGTGGCGGGGGTGGAGAGCAGCGG
CAGGGAGGGTGCCGAGCGAGGGTGGCTGCTGGGCGAGAGAGCGAGAGGGACGGCCGGATTGGGAAGGCGGCTGTG
CCCAGGAACATACATCTGATCCTCCTATCTTATATATATATTTTTCCATTAATGGCCAATAAACAACCTGCCGAC
AAGTCTGCACAGACCACCCTCCAGAGGGGCAAGGCCTGTCTTCGCTGCAGAAAGCGGAAAATGAAATGTGACGGT
GTCAAGCCAGCTTGCCAGCAGTGCGTACGTGCAAAGAAGCCCGACGCTTGCGAATACGACGATGGAAAGGGCAAG
ACTCGCACTCAGCTCATGCGTGAGACCATCCTACGCCTCGAACGTCGCGTCCGAGAACTCGAGGATCCCGAGTAC
GTATCCCCCGCTGTAACCCTCTACGACCCCCATGGACATTCCCGCTCTGGGTCCTCCGCTTCCTCTGTCGATTCC
CCGGACGGTTCTTTTCTATCAGTCCCCCATTCTCCGTTCCCTTCTGGTTCCCCTTCGTCTCCTGCTGCTGCTTGG
ACCCGGAATGTGCCTTCTCCCTCCCCTACACCTTTCCTATCCGAGATGTTTTTCGAGGAGCCACGGTCCTATCTC
CACATGTCGCCAGATTTGGGTTCGATACTGCTTGATATATTTGCTCCACATCAACAACAGTGCGGCCTCGGCATC
GATATTCATCAATTACGTGAATCCCTACATCGGAATCCTTCAGAACGGTCCCATCCCGTCCTACTCAATGCAATC
TACCTTTGGGCCTGCTTTGTTTCCCGACCAGAACCGCTATGCCAAAACGAAGATCACTATCTTCGCCTCGTCTTG
GAGACGTTACCTGATGCGCTCAAGTCTACCGATAAACTCGTTGATGCCATTCAAGCCTCCTGCCTTCTATCAATG
TATTACCTTGCGAATGGAAGGATGTGCGAGGGGGGTTACCATGCTAGCGCCGCTGCCGCCTTAGCCGTCCAGGCG
GGTCTGGGTCGGAATGCCTTTCAAAATGATCTCTGGCCTCCAGCCTGCAGCTTCGAGGACTTTGATCTAAAACCT
GCCAAGACTGCACCCCAGGACGACGCGCGAATAATGTCATTCTGGCAGATCTTTAGCCTCGACCGCTGTTGGTCT
GTATTCCTTCAAAGGCCCTCAATCATTCCCGATGGCCCCGACGCTAGGAACGTTATCAGCTGCCCGTGGCCCCAG
GATCTTGGCAGTTATGAAACAGGGCTTATCAGTGGATGCTCTCCCCTTCCTACTGTTCGAGCTTTCTTGAATGGG
GATGTATCATCCGGTGGATTCTCAGCAATAGTACTTCGAGCTAAAGCGTCAGCACTTTTTGCTCAAGCTGATGCA
GTCGCTAACCTTGCTGGAATGAAGCAGAATGGAAGATTCGCTGACGAAGTGACAGCTCTAGACCATACTATCTCC
CTTTTCCTTTCAATGCTCCTACCGATCAATCAGCTGAATCAGGTTATGCCCGAAGAAAGACAGAGTTTAATTTTA
GCTCATACTTTGGCCAATTGTGCAGTCCTTCACCTTCACCGTGCTTCTGCTCATGGAGATTCTGTTTCCTTTGAG
AAATGCTCTCATGCAGTTCGAGCATGCGTAAATGTAATGAGGCAAATCACCGAACAGGATTACCCGTTCTTGGAT
CCTGTCCTCGCGCCATGCTGGTCAAGCATCTCCGACCACCTTGTCGTGGAGCTTGACACCATGGAATCTGCCTGG
CCATCGATGAATGTCAGCGAAATACGTGATGAACTCAGCACGATCCTCCAAGCTATGACTATCTTCGCTACTCGA
TATCCCGTCATAACACCGGATTTGAACAGGCTTCGGAAACGATTAATGTCATGA
Gene >Agabi119p4|583750
ATGGGCGCGCGAGCTAATCAACGAAGCGCGAAGAAACACATGGGTGCAAATACATAAACGTCACAGAACGAGATC
CCGGATCACAGGGTCAAAGATGAGAGGTAGACGAACCCTTTGTTTCCCTATTTTCGTTGCGTACTTACTAAGATT
GTACATTGGATTGGGATTTTGATGTTGTTTCTGATTTGGATCGTAATGCGAGAAGAACGATGTTGAGAAGCGAGT
ACTGTGCGTGCCGAAAAGCGGCCTCGGAATCGGCTGTCACGCGGTTGACGACAGGGAAAAGAGTGAACAGGGCCG
GGAAATTGCGAGGGCGGACCGGGGGAGGCAGGACGGGCAGAAAAGGCCGGGCTGGGAGAGGGAGAAGCTTGGCAG
AGGAAGAGAGGCGGGGGACGGAGGGCTGGCGGAGGTGGGTGGCGGGGGTGGAGAGCAGCGGCAGGGAGGGTGCCG
AGCGAGGGTGGCTGCTGGGCGAGAGAGCGAGAGGGACGGCCGGATTGGGAAGGCGGCTGTGCCCAGGAACATACA
TCTGGTATGTATTTATTGTTGAGATTGGCTCTCTCCCGGGCACTCTTCCCCTTTCCTCCTCTTTATGTTTGCATA
GCCTTTCGTCTGCTCTTGTCACGCTTTTCTGACTTCTCTGTCCTCCGCCTCCTCCTCTTGACTAGATCCTCCTAT
CTTATATATATATTTTTCCATTAATGGCCAATAAACAACCTGCCGACAAGTCTGCACAGACCACCCTCCAGAGGG
GCAAGGCCTGTCTTCGCTGCAGGTCCGTCGCGACTCCCTTGCCGTGATCCCTCTGTCACTCAGCCTCTGTTCTTT
TTTCCTTTTTTCTTTCCTTTTTCAGAAAGCGGAAAATGGTCGGTCCCTTGCCCCGCCACTCTTTGTTACCCGCTC
ACGTACCCCATCCGCCATTCACAGAAATGTGACGGTGTCAAGCCAGCTTGCCAGCAGTGCGTACGTGCAAAGAAG
CCCGACGCTTGCGAATACGACGATGGAAAGGGCAAGACTCGCACTCAGCTCATGCGTGAGACCATCCTACGCCTC
GAACGTCGCGTCCGAGAACTCGAGGATCCCGAGTACGTATCCCCCGCTGTAACCCTCTACGACCCCCATGGACAT
TCCCGCTCTGGGTCCTCCGCTTCCTCTGTCGATTCCCCGGACGGTTCTTTTCTATCAGTCCCCCATTCTCCGTTC
CCTTCTGGTACTTTCCTCGCCTCCTTCTTGCACTTCCTCAGCTGACATCCCTTCTAGGTTCCCCTTCGTCTCCTG
CTGCTGCTTGGACCCGGGTCTGTTTATCTTCCAATTCCGATTTGCACTTACCTTCTCTGATCGTGTGCCAGAATG
TGCCTTCTCCCTCCCCTACACCTTTCCTATCCGAGATGTTTTTCGAGGAGCCACGGTCCTATCTCCACATGTCGC
CAGATTTGGGTTCGATACTGTAAGTGATAACCGCAATCTTCTTTCTTACAGGCCGGTTGAACCCTCCCTGGCTGC
TTCTATCTAGGCTTGATATATTTGCTCCACATCAACAACAGTGCGGCCTCGGCATCGATATTCATCAATTACGTG
AATCCCTACATCGGAATCCTTCAGAACGGTCCCATCCCGTCCTACTCAATGCAATCTACCTTTGGGCCTGCTTTG
TTTCCCGACCAGAACCGCTATGCCAAAACGAAGATCACTATCTTCGCCTCGTCTTGGAGACGTTACCTGATGCGC
TCAAGTCTACCGATAAACTCGTTGATGCCATTCAAGCCTCCTGCCTTCTATCAATGTATTACCTTGCGAATGGAA
GGATGTGCGAGGGGGGTTACCATGCTAGCGCCGCTGCCGCCTTAGCCGTCCAGGCGGGTCTGGGTCGGAATGCCT
TTCAAAATGATCTCTGGCCTCCAGCCTGCAGCTTCGAGGACTTTGATCTAAAACCTGCCAAGACTGCACCCCAGG
ACGACGCGCGAATAATGTCATTCTGGCAGATCTTTAGCCTCGACCGCTGTTGGTCTGTATTCCTTCAAAGGCCCT
CAATCATTCCCGATGGCCCCGACGCTAGGAACGTTATCAGCTGCCCGTGGCCCCAGGATCTTGGCAGTTATGAAA
CAGTTCGTGACTTTTCATTTCTAATTGTGACAATGTATTAACCGACTCTCTGTCGATGGTTATCTAGGGGCTTAT
CAGTGGATGCTCTCCCCTTCCTACTGTTCGAGCTTTCTTGAATGGGGATGTATCATCCGGTGGATTCTCAGCAAT
AGTACTTCGAGCTAAAGCGTCAGCACTTTTTGCTCAAGCTGATGCAGTCGCTAGTGCGTGATCCCATCTGCCTAC
TTTGCAACTTCTTCTTCTGACGTAGAGCCCTGCCTTGGACAGACCTTGCTGGAATGAAGCAGAATGGAAGATTCG
CTGACGAAGTGACAGCTCTAGACCATACTATCTCCCTTTTCCTTTCAATGCTCCTACCGATCAATCAGCTGAATC
AGGTTATGCCCGAAGAAAGACAGAGTTTAATTTTAGCTCATACTTTGGCCAATTGTGCAGTCCTTCACCTTCACC
GTGCTTCTGCTCATGGAGATTCTGTTTCCTTTGAGAAATGCTCTCATGCAGTTCGAGCATGCGTAAATGTAATGA
GGCAAATCACCGAACAGGATTACCCGTTCTTGGATCCTGTCCTCGCGGTAGGATTTATGTTTCCTTACCATGTTC
AATTTGCTTATCGAGTAACCTAGCCATGCTGGTCAAGCATCTCCGACCACCTTGTCGTGGAGCTTGACACCATGG
AATCTGCCTGGCCATCGATGAATGTCAGCGAAATACGTGATGAACTCAGCACGATCCTCCAAGCTATGACTATCT
TCGCTACTCGATATCCCGTCATAAGTAAGTCCTCCTGAATTACCGAATGGGACATGCTAAATGTCTCCTAGCACC
GGATTTGAACAGGCTTCGGAAACGATTAATGTCATGA

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