Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|581700
Gene name
Locationscaffold_02:1453681..1454371
Strand+
Gene length (bp)690
Transcript length (bp)690
Coding sequence length (bp)690
Protein length (aa) 230

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13976 gag_pre-integrs GAG-pre-integrase domain 3.7E-11 36 103

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 54 225 3.0E-29
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 13 227 7.0E-23
sp|P0CX64|YG22B_YEAST Transposon Ty2-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-GR2 PE=3 SV=1 58 225 9.0E-12
sp|P0CX63|YF21B_YEAST Transposon Ty2-F Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-F PE=3 SV=1 58 225 9.0E-12
sp|P25384|YC21B_YEAST Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-C PE=3 SV=2 58 225 9.0E-12
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Swissprot ID Swissprot Description Start End E-value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 54 225 3.0E-29
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 13 227 7.0E-23
sp|P0CX64|YG22B_YEAST Transposon Ty2-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-GR2 PE=3 SV=1 58 225 9.0E-12
sp|P0CX63|YF21B_YEAST Transposon Ty2-F Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-F PE=3 SV=1 58 225 9.0E-12
sp|P25384|YC21B_YEAST Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-C PE=3 SV=2 58 225 9.0E-12
sp|Q03494|YD22B_YEAST Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR2 PE=3 SV=2 58 225 9.0E-12
sp|P0C2J3|YL21B_YEAST Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-LR1 PE=3 SV=1 58 225 9.0E-12
sp|Q12491|YB21B_YEAST Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-B PE=3 SV=1 58 225 1.0E-11
sp|Q07791|YD23B_YEAST Transposon Ty2-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR3 PE=3 SV=1 58 225 1.0E-11
sp|P0C2J5|YL22B_YEAST Transposon Ty2-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-LR2 PE=5 SV=1 58 225 1.0E-11
sp|Q12337|YG21B_YEAST Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-GR1 PE=5 SV=2 58 225 1.0E-11
sp|Q12472|YD21B_YEAST Transposon Ty2-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-DR1 PE=1 SV=3 58 225 1.0E-11
sp|Q12501|YO22B_YEAST Transposon Ty2-OR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-OR2 PE=1 SV=1 58 225 1.0E-11
sp|Q12113|YO21B_YEAST Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-OR1 PE=3 SV=1 58 225 1.0E-11
sp|P0C2I7|YL14B_YEAST Transposon Ty1-LR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-LR4 PE=5 SV=1 89 225 6.0E-11
sp|Q99337|YN12B_YEAST Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-NL2 PE=3 SV=1 89 225 7.0E-11
sp|Q07163|TY1AB_YEASX Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B PE=1 SV=2 89 225 7.0E-11
sp|Q03855|YD11B_YEAST Transposon Ty1-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR1 PE=3 SV=2 89 225 7.0E-11
sp|Q12269|YG12B_YEAST Transposon Ty1-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-GR2 PE=3 SV=3 89 225 7.0E-11
sp|P0C2I5|YL12B_YEAST Transposon Ty1-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-LR2 PE=3 SV=1 89 225 7.0E-11
sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-PL PE=3 SV=1 89 225 7.0E-11
sp|P0C2I2|YD14B_YEAST Transposon Ty1-DR5 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR5 PE=3 SV=1 89 225 7.0E-11
sp|P0C2I3|YD15B_YEAST Transposon Ty1-DR6 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR6 PE=3 SV=1 89 225 7.0E-11
sp|Q03434|YM12B_YEAST Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ML2 PE=3 SV=2 85 225 7.0E-11
sp|Q99231|YD12B_YEAST Transposon Ty1-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR3 PE=1 SV=2 89 225 7.0E-11
sp|Q04214|YM13B_YEAST Transposon Ty1-MR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-MR1 PE=1 SV=2 89 225 8.0E-11
sp|Q07793|YD13B_YEAST Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-DR4 PE=3 SV=2 92 225 8.0E-11
sp|Q12193|YB12B_YEAST Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-BR PE=3 SV=1 89 225 8.0E-11
sp|Q12316|YG13B_YEAST Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-GR3 PE=3 SV=3 89 225 8.0E-11
sp|Q03619|YE12B_YEAST Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ER2 PE=3 SV=1 89 225 8.0E-11
sp|O13535|YH11B_YEAST Transposon Ty1-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-H PE=3 SV=1 89 225 8.0E-11
sp|P0C2I9|YP12B_YEAST Transposon Ty1-PR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-PR1 PE=3 SV=1 89 225 9.0E-11
sp|P0C2I6|YL13B_YEAST Transposon Ty1-LR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-LR3 PE=3 SV=1 89 225 9.0E-11
sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-LR1 PE=3 SV=1 89 225 9.0E-11
sp|Q12490|YB11B_YEAST Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-BL PE=1 SV=1 89 225 9.0E-11
sp|Q12112|YN11B_YEAST Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-NL1 PE=3 SV=1 89 225 9.0E-11
sp|P47098|YJ11B_YEAST Transposon Ty1-JR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-JR1 PE=3 SV=3 89 225 1.0E-10
sp|Q04711|YM11B_YEAST Transposon Ty1-ML1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ML1 PE=3 SV=2 89 225 1.0E-10
sp|P0C2J1|YP14B_YEAST Transposon Ty1-PR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-PR3 PE=1 SV=1 89 225 1.0E-10
sp|Q92393|YO12B_YEAST Transposon Ty1-OR Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-OR PE=3 SV=1 89 225 1.0E-10
sp|P47100|YJ12B_YEAST Transposon Ty1-JR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-JR2 PE=3 SV=3 89 225 1.0E-10
sp|Q12141|YG11B_YEAST Transposon Ty1-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-GR1 PE=3 SV=1 89 225 1.0E-10
sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-OL PE=3 SV=1 89 225 1.0E-10
sp|Q04670|YM14B_YEAST Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-MR2 PE=3 SV=2 89 225 1.0E-10
sp|Q03612|YE11B_YEAST Transposon Ty1-ER1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-ER1 PE=3 SV=1 89 225 1.0E-10
sp|O13527|YA11B_YEAST Truncated transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-A PE=3 SV=3 89 225 4.0E-10
sp|P0C2J0|YP13B_YEAST Transposon Ty1-PR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY1B-PR2 PE=3 SV=1 89 225 3.0E-09
sp|P93293|M300_ARATH Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg00300 PE=4 SV=1 36 128 2.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 70 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|581700
MADGFNITISSHSIDFKCKGTSLFTATIHSNNSAELDGSTLTSETAFSVSTLPVDLSLWHCRFIHHNYADVKSMI
SKDLVSGLKLESNSSPDSICEPCLAGKMHSLPFPSSLNHNRSPLELVHSDLHGPLPVASHSGYKYWITFIDDATR
FRAVYLLKAKSEAFEAFKVYKSWAETQLGVKLRALQDNKGGEYMSKAFISFTELAGIERRHSTRNRPQQNGLAER
AIAP*
Coding >Agabi119p4|581700
ATGGCTGACGGCTTCAATATCACTATCTCCTCTCACTCTATTGACTTCAAATGCAAGGGCACATCGCTTTTCACG
GCCACTATCCACTCCAACAACTCTGCTGAGCTTGACGGCTCAACTCTCACTTCTGAGACTGCTTTCTCTGTCTCT
ACCCTCCCGGTTGACCTCTCGCTGTGGCATTGTCGCTTCATTCATCACAACTACGCTGATGTGAAGTCTATGATC
AGTAAGGACCTTGTTTCCGGGCTCAAACTCGAGTCCAACTCGTCCCCTGACTCTATCTGTGAGCCGTGCTTGGCT
GGCAAAATGCATTCCCTCCCTTTTCCCTCCTCCTTGAATCACAATCGCTCTCCTCTCGAGCTGGTGCATTCAGAC
CTTCACGGACCGCTCCCAGTTGCTTCACACTCAGGCTACAAGTACTGGATCACCTTCATTGACGACGCCACACGT
TTCCGGGCTGTCTATCTGCTTAAAGCCAAGTCGGAGGCATTTGAAGCCTTCAAAGTCTACAAATCCTGGGCTGAG
ACTCAACTCGGAGTCAAATTACGGGCTCTACAGGATAATAAGGGTGGCGAGTATATGTCTAAGGCCTTCATAAGC
TTTACTGAGCTTGCTGGCATCGAGAGACGTCACTCGACTCGGAACCGGCCTCAGCAGAATGGACTTGCTGAACGG
GCCATCGCTCCTTGA
Transcript >Agabi119p4|581700
ATGGCTGACGGCTTCAATATCACTATCTCCTCTCACTCTATTGACTTCAAATGCAAGGGCACATCGCTTTTCACG
GCCACTATCCACTCCAACAACTCTGCTGAGCTTGACGGCTCAACTCTCACTTCTGAGACTGCTTTCTCTGTCTCT
ACCCTCCCGGTTGACCTCTCGCTGTGGCATTGTCGCTTCATTCATCACAACTACGCTGATGTGAAGTCTATGATC
AGTAAGGACCTTGTTTCCGGGCTCAAACTCGAGTCCAACTCGTCCCCTGACTCTATCTGTGAGCCGTGCTTGGCT
GGCAAAATGCATTCCCTCCCTTTTCCCTCCTCCTTGAATCACAATCGCTCTCCTCTCGAGCTGGTGCATTCAGAC
CTTCACGGACCGCTCCCAGTTGCTTCACACTCAGGCTACAAGTACTGGATCACCTTCATTGACGACGCCACACGT
TTCCGGGCTGTCTATCTGCTTAAAGCCAAGTCGGAGGCATTTGAAGCCTTCAAAGTCTACAAATCCTGGGCTGAG
ACTCAACTCGGAGTCAAATTACGGGCTCTACAGGATAATAAGGGTGGCGAGTATATGTCTAAGGCCTTCATAAGC
TTTACTGAGCTTGCTGGCATCGAGAGACGTCACTCGACTCGGAACCGGCCTCAGCAGAATGGACTTGCTGAACGG
GCCATCGCTCCTTGA
Gene >Agabi119p4|581700
ATGGCTGACGGCTTCAATATCACTATCTCCTCTCACTCTATTGACTTCAAATGCAAGGGCACATCGCTTTTCACG
GCCACTATCCACTCCAACAACTCTGCTGAGCTTGACGGCTCAACTCTCACTTCTGAGACTGCTTTCTCTGTCTCT
ACCCTCCCGGTTGACCTCTCGCTGTGGCATTGTCGCTTCATTCATCACAACTACGCTGATGTGAAGTCTATGATC
AGTAAGGACCTTGTTTCCGGGCTCAAACTCGAGTCCAACTCGTCCCCTGACTCTATCTGTGAGCCGTGCTTGGCT
GGCAAAATGCATTCCCTCCCTTTTCCCTCCTCCTTGAATCACAATCGCTCTCCTCTCGAGCTGGTGCATTCAGAC
CTTCACGGACCGCTCCCAGTTGCTTCACACTCAGGCTACAAGTACTGGATCACCTTCATTGACGACGCCACACGT
TTCCGGGCTGTCTATCTGCTTAAAGCCAAGTCGGAGGCATTTGAAGCCTTCAAAGTCTACAAATCCTGGGCTGAG
ACTCAACTCGGAGTCAAATTACGGGCTCTACAGGATAATAAGGGTGGCGAGTATATGTCTAAGGCCTTCATAAGC
TTTACTGAGCTTGCTGGCATCGAGAGACGTCACTCGACTCGGAACCGGCCTCAGCAGAATGGACTTGCTGAACGG
GCCATCGCTCCTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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