Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|577650
Gene name
Locationscaffold_02:572922..574047
Strand-
Gene length (bp)1125
Transcript length (bp)954
Coding sequence length (bp)954
Protein length (aa) 318

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08590 DUF1771 Domain of unknown function (DUF1771) 4.3E-12 152 215
PF01713 Smr Smr domain 1.5E-10 223 290

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q08954|YP199_YEAST Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1 149 298 3.0E-25
sp|Q9UTP4|YLL3_SCHPO Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=3 SV=1 172 296 1.0E-17
sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2 150 296 6.0E-07
sp|O64843|CID7_ARATH Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1 103 262 2.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|577650
MPFFKPLLLLATFYGVCKLGSYLFSDDSPPPPPPPPPPSYPQSRSRSPRRAQGLGGQHAQAPSPHRCSSSCLAGR
HVYQAQPPTTLQPQRPPVKTVSEHRPLSRQNVGQHHSQVESSLITDPYRSHDHHNPQVEPVRNAGASNKDDERDP
HYVHLRNEAKKYYGLMIEARDESKIARDQGNRARARELSSKRTEYSDLMESYHEQASEWIFYQLNRNNDPGEVDL
HGLYVKEAIPRVERKLKEARARGAPSIRFIVGQGRHSDDGIPKLKPAIENLIRESGLSSRIEQFNPGALIVDFDS
HSESRGRDYLRDRTNQG*
Coding >Agabi119p4|577650
ATGCCTTTCTTCAAGCCGTTGTTGTTGTTGGCCACTTTCTATGGTGTTTGTAAACTCGGCTCCTATTTATTCAGT
GATGACTCTCCGCCCCCTCCACCACCACCCCCTCCACCATCTTATCCCCAATCACGTTCACGTTCACCTCGACGA
GCTCAGGGACTCGGAGGCCAACATGCACAGGCGCCATCCCCACACCGATGCTCTTCCTCTTGTCTTGCCGGTCGA
CACGTCTACCAAGCCCAACCGCCAACCACCCTACAGCCTCAACGCCCACCCGTAAAGACTGTATCAGAGCACCGG
CCTCTTTCTCGCCAAAACGTGGGGCAACATCACTCCCAAGTCGAGTCCTCCCTCATAACGGATCCATATCGATCC
CATGACCATCATAACCCTCAAGTAGAACCTGTTCGCAACGCCGGAGCATCCAATAAGGATGATGAGCGAGATCCG
CATTATGTCCACCTTCGCAATGAGGCAAAGAAGTACTACGGTCTCATGATTGAGGCCCGTGACGAGAGTAAAATT
GCTCGCGACCAAGGCAATCGTGCTCGAGCCAGAGAATTGTCCAGTAAACGTACTGAGTATAGTGACCTCATGGAA
AGTTATCATGAACAGGCCAGTGAATGGATATTTTACCAGCTCAACAGAAACAATGACCCAGGCGAAGTGGATTTA
CACGGATTATACGTTAAAGAAGCTATTCCTCGAGTAGAGCGAAAACTCAAAGAAGCTCGAGCGCGAGGTGCTCCA
TCCATCCGATTCATCGTTGGACAAGGCCGCCATTCGGATGATGGCATTCCTAAACTCAAACCTGCGATCGAAAAT
TTGATCCGAGAGTCAGGGCTTTCCTCGAGAATCGAGCAGTTCAATCCGGGTGCCTTGATAGTCGACTTTGATTCT
CACTCAGAATCTAGAGGTCGTGATTATCTCCGCGACAGGACTAATCAGGGCTAA
Transcript >Agabi119p4|577650
ATGCCTTTCTTCAAGCCGTTGTTGTTGTTGGCCACTTTCTATGGTGTTTGTAAACTCGGCTCCTATTTATTCAGT
GATGACTCTCCGCCCCCTCCACCACCACCCCCTCCACCATCTTATCCCCAATCACGTTCACGTTCACCTCGACGA
GCTCAGGGACTCGGAGGCCAACATGCACAGGCGCCATCCCCACACCGATGCTCTTCCTCTTGTCTTGCCGGTCGA
CACGTCTACCAAGCCCAACCGCCAACCACCCTACAGCCTCAACGCCCACCCGTAAAGACTGTATCAGAGCACCGG
CCTCTTTCTCGCCAAAACGTGGGGCAACATCACTCCCAAGTCGAGTCCTCCCTCATAACGGATCCATATCGATCC
CATGACCATCATAACCCTCAAGTAGAACCTGTTCGCAACGCCGGAGCATCCAATAAGGATGATGAGCGAGATCCG
CATTATGTCCACCTTCGCAATGAGGCAAAGAAGTACTACGGTCTCATGATTGAGGCCCGTGACGAGAGTAAAATT
GCTCGCGACCAAGGCAATCGTGCTCGAGCCAGAGAATTGTCCAGTAAACGTACTGAGTATAGTGACCTCATGGAA
AGTTATCATGAACAGGCCAGTGAATGGATATTTTACCAGCTCAACAGAAACAATGACCCAGGCGAAGTGGATTTA
CACGGATTATACGTTAAAGAAGCTATTCCTCGAGTAGAGCGAAAACTCAAAGAAGCTCGAGCGCGAGGTGCTCCA
TCCATCCGATTCATCGTTGGACAAGGCCGCCATTCGGATGATGGCATTCCTAAACTCAAACCTGCGATCGAAAAT
TTGATCCGAGAGTCAGGGCTTTCCTCGAGAATCGAGCAGTTCAATCCGGGTGCCTTGATAGTCGACTTTGATTCT
CACTCAGAATCTAGAGGTCGTGATTATCTCCGCGACAGGACTAATCAGGGCTAA
Gene >Agabi119p4|577650
ATGCCTTTCTTCAAGCCGTTGTTGTTGTTGGCCACTTTCTATGGTGTTTGTAAACTCGGCTCCTATTTATTCAGT
GATGACTCTCCGCCCCCTCCACCACCACCCCCTCCACCATCTTATCCCCAATCACGTTCACGTTCACCTCGACGA
GCTCAGGGACTCGGAGGCCAACATGCACAGGCGCCATCCCCACACCGATGCTCTTCCTCTTGTCTTGCCGGTCGA
CACGTCTACCAAGCCCAACCGCCAACCACCCTACAGCCTCAACGCCCACCCGTAAAGACTGTATCAGAGCACCGG
CCTCTTTCTCGCCAAAACGTGGGGCAACATCACTCCCAAGTCGAGTCCTCCCTCATAACGGATCCATATCGATCC
CATGACCATCATAACCCTCAAGTAGAACCTGTTCGCAACGCCGGAGCATCCAATAAGGTCTGCCTGTCGAAACCT
TATTTTTATGAGCATTCAGTTGATCGTTATGTTAGGATGATGAGCGAGATCCGCATTATGTCCACCTTCGCAATG
AGGCAAAGAAGTACTACGGTCTCATGATTGAGGCCCGTGACGAGAGTAAAATTGCTCGCGACCAAGGCAATCGTG
CTCGAGCCAGAGAATTGTCCAGTAAACGTACTGAGTATAGTGACCTCATGGAAAGTTATCATGAACAGGCCAGTG
AATGGATATTTTACCGTAAGTTTTCGTCCCACTGATTTCAATCCGCGTTCTGATCCGAAAATCCGTCCTTAGAGC
TCAACAGAGTTCGTGGATTATCTTCCTATTCGCTTCCGCTGTGTGTACTCAATGATCACCATTCATCAGAACAAT
GACCCAGGCGAAGTGGATTTACACGGATTATACGTTAAAGAAGCTATTCCTCGAGTAGAGCGAAAACTCAAAGAA
GCTCGAGCGCGAGGTGCTCCATCCATCCGATTCATCGTTGGACAAGGCCGCCATTCGGATGATGGCATTCCTAAA
CTCAAACCTGCGATCGAAAATTTGATCCGAGAGTCAGGGCTTTCCTCGAGAATCGAGCAGTTCAATCCGGGTGCC
TTGATAGTCGACTTTGATTCTCACTCAGAATCTAGAGGTCGTGATTATCTCCGCGACAGGACTAATCAGGGCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail