© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|576350 |
| Gene name | |
| Location | scaffold_02:308823..310572 |
| Strand | - |
| Gene length (bp) | 1749 |
| Transcript length (bp) | 1485 |
| Coding sequence length (bp) | 1485 |
| Protein length (aa) | 495 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13641 | Glyco_tranf_2_3 | Glycosyltransferase like family 2 | 1.7E-32 | 52 | 285 |
| PF00535 | Glycos_transf_2 | Glycosyl transferase family 2 | 7.4E-08 | 55 | 179 |
| PF13506 | Glyco_transf_21 | Glycosyl transferase family 21 | 5.1E-06 | 114 | 284 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O00219|HYAS3_HUMAN | Hyaluronan synthase 3 OS=Homo sapiens GN=HAS3 PE=2 SV=3 | 85 | 409 | 4.0E-10 |
| sp|O08650|HYAS3_MOUSE | Hyaluronan synthase 3 OS=Mus musculus GN=Has3 PE=1 SV=2 | 127 | 409 | 1.0E-09 |
| sp|P04341|NODC_RHIME | N-acetylglucosaminyltransferase OS=Rhizobium meliloti (strain 1021) GN=nodC PE=3 SV=1 | 101 | 410 | 4.0E-08 |
| sp|Q07755|NODC_AZOC5 | N-acetylglucosaminyltransferase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=nodC PE=3 SV=2 | 115 | 410 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 27 | 17 |
| 2 | 315 | 337 | 22 |
| 3 | 378 | 400 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|576350 MLYLTADSFPVFVPFGIIGFYRYLWFLIRVAAWWTYRPVPIPENPTYVASEDVTIIVPTIDAGEEFKEAAHSWLV GKPKEILIITEEKMLGPLQDLANQVDPERIRVLTVPFANKRLQMSHGIKNCTTDIIVFADDDAIWPPTLLPYVLA CFEDQQVGGVGTSQRVQSVGNRMTVWEVLAAFRLTIRNIEISSSTHIDGGIPCLSGRTAAYRTVILKDPEFLHGF THDFWLGKYQLNSGDDKFLTRWMVSHGWNTQVQVCKEAELLSTMKPNWRFLKQVLRWTRNTWRSDLRSLFMERYI WTQHPYVAYTMCDKLINPFTLLVGPCLVSYLVYKSTIPVDAGGYHLPWWNIVLSYVVWLSATRTAKLLPHLWNRP QDIIYVPAFILFGYYFAIMKLYALCTLHETGWGTRAGIGDIGAATAAIDAGNEKTANNPYSQPAGAFSNSQNPLS PFRDQVPLSPYRDTPGSTLSYSNRGNANRRTDEEGVELQVGYAR* |
| Coding | >Agabi119p4|576350 ATGCTCTACCTCACCGCCGACTCTTTCCCAGTTTTCGTCCCCTTTGGAATTATCGGTTTTTACCGCTACTTATGG TTCCTAATACGCGTGGCAGCGTGGTGGACATACCGCCCCGTCCCTATTCCAGAAAATCCCACCTACGTCGCCTCT GAAGATGTCACTATCATCGTTCCCACTATTGATGCCGGCGAGGAATTCAAGGAAGCCGCCCATAGCTGGCTCGTC GGCAAGCCCAAAGAAATCCTCATCATCACTGAAGAAAAAATGCTAGGACCCCTTCAAGACCTTGCTAACCAAGTC GATCCTGAGCGCATACGTGTCCTCACCGTTCCCTTTGCCAACAAACGCCTCCAAATGAGCCACGGCATCAAGAAC TGCACCACTGACATCATTGTATTTGCTGACGATGATGCCATCTGGCCGCCTACACTTCTTCCCTATGTCCTTGCC TGTTTCGAAGACCAACAAGTCGGTGGTGTCGGAACAAGTCAACGAGTACAGTCCGTTGGTAATAGGATGACCGTT TGGGAGGTATTAGCCGCTTTCCGGCTTACCATTCGAAATATCGAAATATCTTCCTCCACACACATAGATGGCGGT ATACCCTGTTTATCAGGACGGACAGCCGCATACCGCACTGTTATTCTCAAAGACCCCGAGTTTCTCCATGGCTTC ACTCACGACTTTTGGCTCGGGAAATACCAACTTAATTCGGGTGACGACAAATTTTTGACGCGATGGATGGTTAGC CACGGATGGAACACCCAGGTTCAGGTCTGCAAGGAAGCCGAGCTTTTGAGTACCATGAAGCCCAACTGGCGCTTC TTGAAGCAGGTGCTACGTTGGACTCGAAATACCTGGCGGTCGGATTTGAGGAGTTTGTTCATGGAACGCTACATC TGGACACAGCATCCTTACGTCGCATACACCATGTGCGACAAACTCATTAACCCTTTTACCTTGCTTGTCGGACCC TGTTTGGTCTCATACCTTGTTTACAAGAGTACAATCCCTGTCGATGCGGGTGGATATCACTTGCCTTGGTGGAAT ATCGTCCTGTCATACGTCGTTTGGCTTAGTGCGACTCGTACAGCCAAGCTCCTCCCACATCTCTGGAATCGTCCT CAAGACATCATTTATGTGCCCGCATTCATTCTGTTTGGGTACTATTTCGCTATCATGAAACTGTATGCCCTTTGC ACGCTACACGAAACTGGATGGGGAACACGTGCTGGTATCGGTGACATTGGCGCTGCCACCGCTGCTATTGATGCG GGTAACGAGAAGACGGCTAATAATCCATACTCGCAACCGGCCGGCGCTTTTAGCAATTCTCAAAACCCATTATCC CCGTTCCGTGACCAAGTACCTCTATCACCATACCGTGATACACCGGGCTCAACGCTATCCTATTCGAACCGAGGT AATGCAAATCGAAGAACAGATGAAGAAGGTGTCGAGTTACAGGTGGGCTATGCTCGCTGA |
| Transcript | >Agabi119p4|576350 ATGCTCTACCTCACCGCCGACTCTTTCCCAGTTTTCGTCCCCTTTGGAATTATCGGTTTTTACCGCTACTTATGG TTCCTAATACGCGTGGCAGCGTGGTGGACATACCGCCCCGTCCCTATTCCAGAAAATCCCACCTACGTCGCCTCT GAAGATGTCACTATCATCGTTCCCACTATTGATGCCGGCGAGGAATTCAAGGAAGCCGCCCATAGCTGGCTCGTC GGCAAGCCCAAAGAAATCCTCATCATCACTGAAGAAAAAATGCTAGGACCCCTTCAAGACCTTGCTAACCAAGTC GATCCTGAGCGCATACGTGTCCTCACCGTTCCCTTTGCCAACAAACGCCTCCAAATGAGCCACGGCATCAAGAAC TGCACCACTGACATCATTGTATTTGCTGACGATGATGCCATCTGGCCGCCTACACTTCTTCCCTATGTCCTTGCC TGTTTCGAAGACCAACAAGTCGGTGGTGTCGGAACAAGTCAACGAGTACAGTCCGTTGGTAATAGGATGACCGTT TGGGAGGTATTAGCCGCTTTCCGGCTTACCATTCGAAATATCGAAATATCTTCCTCCACACACATAGATGGCGGT ATACCCTGTTTATCAGGACGGACAGCCGCATACCGCACTGTTATTCTCAAAGACCCCGAGTTTCTCCATGGCTTC ACTCACGACTTTTGGCTCGGGAAATACCAACTTAATTCGGGTGACGACAAATTTTTGACGCGATGGATGGTTAGC CACGGATGGAACACCCAGGTTCAGGTCTGCAAGGAAGCCGAGCTTTTGAGTACCATGAAGCCCAACTGGCGCTTC TTGAAGCAGGTGCTACGTTGGACTCGAAATACCTGGCGGTCGGATTTGAGGAGTTTGTTCATGGAACGCTACATC TGGACACAGCATCCTTACGTCGCATACACCATGTGCGACAAACTCATTAACCCTTTTACCTTGCTTGTCGGACCC TGTTTGGTCTCATACCTTGTTTACAAGAGTACAATCCCTGTCGATGCGGGTGGATATCACTTGCCTTGGTGGAAT ATCGTCCTGTCATACGTCGTTTGGCTTAGTGCGACTCGTACAGCCAAGCTCCTCCCACATCTCTGGAATCGTCCT CAAGACATCATTTATGTGCCCGCATTCATTCTGTTTGGGTACTATTTCGCTATCATGAAACTGTATGCCCTTTGC ACGCTACACGAAACTGGATGGGGAACACGTGCTGGTATCGGTGACATTGGCGCTGCCACCGCTGCTATTGATGCG GGTAACGAGAAGACGGCTAATAATCCATACTCGCAACCGGCCGGCGCTTTTAGCAATTCTCAAAACCCATTATCC CCGTTCCGTGACCAAGTACCTCTATCACCATACCGTGATACACCGGGCTCAACGCTATCCTATTCGAACCGAGGT AATGCAAATCGAAGAACAGATGAAGAAGGTGTCGAGTTACAGGTGGGCTATGCTCGCTGA |
| Gene | >Agabi119p4|576350 ATGCTCTACCTCACCGCCGACTCTTTCCCAGTTTGTGAGTTGCTGTCTTCTTTCTCCCACTCGTCCCCCGAGTCT TACTTCGACCCCTAGTCGTCCCCTTTGGAATTATCGGGTAGCTTTCTTCGCCTCAATTCCCGCCTTCTTACCAAC TGACTCGCATCCAGTTTTTACCGCTACTTATGGTTCCTAATACGCGTGGCAGCGTGGTGGACATACCGCCCCGTC CCTATTCCAGAAAATCCCACCTACGTCGCCTCTGAAGATGTCACTATCATCGTTCCCACTATTGATGCCGGCGAG GAATTCAAGGAAGCCGCCCATAGCTGGCTCGTCGGCAAGCCCAAAGAAATCCTCATCATCACTGAAGAAAAAATG CTAGGACCCCTTCAAGACCTTGCTAACCAAGTCGATCCTGAGCGCATACGTGTCCTCACCGTTCCCTTTGCCAAC AAACGCCTCCAAATGAGCCACGGCATCAAGAACTGCACCACTGACATCATTGTATTTGCTGACGATGATGCCATC TGGCCGCCTACACTTCTTCCCTATGTCCTTGCCTGTTTCGAAGACCAACAAGTCGGTGGTGTCGGAACAAGTCAA CGAGTACAGTCCGTTGGTAATAGGATGACCGTTTGGGAGGTATTAGCCGCTTTCCGGCTTACCATTCGAAATATC GAAATATCTTCCTCCACACACATAGATGGCGGTATACCCTGTTTATCAGGACGGACAGCCGCATACCGCACTGTT ATTCTCAAAGACCCCGAGTTTCTCCATGGCTTCACTCACGACTTTTGGCTCGGGAAATACCAACTTAATTCGGGT GACGACAAATTTTTGACGCGATGGATGGTTAGCCACGGATGGAACACCCAGGTTCAGGTCTGCAAGGAAGCCGAG CTTTTGAGTACCATGAAGCCCAACTGGCGCTTCTTGAAGCAGGTGCTACGTTGGACTCGAAATACCTGGCGGTCG GATTTGAGGAGTTTGTTCATGGAACGCTACATCTGGACACAGCATCCTTACGTCGCATACACCATGGTTCGTACT TGGCCTTCATTTGTACTTCTCAAGTTGATTGACTTCCTATGTCAGTGCGACAAACTCATTAACCCTTTTACCTTG CTTGTCGGACCCTGTTTGGTCTCATACCTTGTTTACAAGAGTACAATCCCTGTCGATGCGGGTGGATATCACTTG CCTTGGTGGTAAGTAGCCTTAGAATCATTTGATTTTAGGTTGTTCATGCTTCTCCTAGGAATATCGTCCTGTCAT ACGTCGTTTGGCTTAGTGCGACTCGTACAGCCAAGCTCCTCCCACATCTCTGGAATCGTCCTCAAGACATCATTT ATGTGCCCGCATTCATTCTGTTTGGGTACTATTTCGCTATCATGAAACTGTATGCCCTTTGCACGCTACACGAAG TGGGTCTTTTTGTTTTTCCCGATGTGAAAATATCTTAATCTCGTTATACAGACTGGATGGGGAACACGTGCTGGT ATCGGTGACATTGGCGCTGCCACCGCTGCTATTGATGCGGGTAACGAGAAGACGGCTAATAATCCATACTCGCAA CCGGCCGGCGCTTTTAGCAATTCTCAAAACCCATTATCCCCGTTCCGTGACCAAGTACCTCTATCACCATACCGT GATACACCGGGCTCAACGCTATCCTATTCGAACCGAGGTAATGCAAATCGAAGAACAGATGAAGAAGGTGTCGAG TTACAGGTGGGCTATGCTCGCTGA |