Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|564700
Gene name
Locationscaffold_01a:2998138..2999686
Strand-
Gene length (bp)1548
Transcript length (bp)1548
Coding sequence length (bp)1548
Protein length (aa) 516

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 5.0E-13 39 165

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 60 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|564700
MLAIVNGSDNSAWEMSGSPVPPLPTTDPVEIRARSLLSARASAIIKSHLPNSMLSQAAAQTDARALWSWLEGQYG
QKGPTFAYERFVTAQNFKINDSADPSSAIADLYALFAAVESTGALIHESIRTMMLLNALPNRFEHVASNILAEKR
SVADLKWEETRARIIAAWRNPHTVANAARFCQQNQPKPKWDNKKPDQGQGKSQGSGSSFGSGQNQNKQQQPQQKK
EGEQQNENNKKKRTRSHKKKQGNEASTASIEEVKDTTSDYSASSAITSMVRLTSTSTRAKVDEMKSRFVPLPSRS
DPNLTWNRSPKLGNHTISGEEFLFFPDGNMIDLSPLDTDIDSWTLPRLHPATRNLLSDESDVDLDPSDSGSISRD
PRKRPSSRHSPTPYERAKTKALSLWDQRLNTVTVTAPPIEDGASQVGGNALAVKMPATKGKQVEKMDVDKADEIS
LGDEDGEFEYEYDAECEPDSFAQVPRSSSISQINSWILQGSTISRNKGLVEPAYLRGRSGRSSWL*
Coding >Agabi119p4|564700
ATGCTTGCCATAGTCAACGGCTCCGATAATTCGGCTTGGGAGATGAGTGGTTCCCCTGTTCCTCCTCTGCCAACC
ACAGATCCGGTTGAGATACGAGCTCGTTCTCTCCTCTCGGCCCGAGCATCTGCTATTATCAAGTCTCATCTCCCA
AATTCGATGCTCAGTCAAGCGGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGTTAGAAGGCCAGTACGGC
CAGAAAGGACCGACATTCGCTTACGAGCGTTTTGTCACGGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCA
TCATCTGCGATTGCAGATCTCTATGCACTATTTGCCGCTGTTGAAAGCACCGGTGCGTTGATCCATGAATCGATC
CGCACCATGATGCTCCTCAACGCTCTCCCAAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGG
TCGGTTGCCGATCTTAAATGGGAGGAAACCCGTGCCCGCATCATCGCTGCATGGCGCAACCCCCATACAGTTGCC
AATGCTGCGCGTTTCTGCCAGCAGAACCAGCCGAAACCCAAATGGGACAACAAAAAACCCGATCAAGGTCAGGGT
AAGTCCCAAGGCTCTGGTTCCAGTTTTGGCTCCGGCCAGAATCAAAACAAGCAACAACAACCTCAGCAGAAGAAG
GAAGGTGAGCAGCAGAATGAGAACAACAAGAAGAAGAGAACCCGCTCCCATAAAAAGAAGCAGGGTAATGAGGCA
TCTACAGCCTCTATCGAAGAAGTCAAGGATACCACTTCTGACTATTCCGCTTCTTCTGCCATCACCTCAATGGTG
CGGCTCACATCCACCTCTACTCGCGCGAAAGTTGATGAGATGAAGAGCAGGTTTGTCCCGCTCCCATCTAGATCA
GATCCAAATCTAACGTGGAATAGATCGCCCAAGCTGGGCAACCATACTATTTCGGGTGAGGAATTTCTTTTCTTC
CCTGATGGTAATATGATTGATCTTTCCCCTCTGGATACTGATATTGACTCTTGGACTTTGCCTCGGCTTCATCCC
GCAACGCGAAATCTCCTATCGGACGAATCTGATGTTGATCTTGATCCATCAGACTCCGGGTCGATCTCTCGGGAC
CCTCGGAAACGTCCTTCCTCTCGCCATTCCCCCACGCCCTACGAAAGGGCCAAAACGAAAGCGTTATCCCTCTGG
GATCAACGTCTTAACACAGTGACTGTAACAGCCCCTCCAATCGAGGATGGGGCCAGTCAAGTGGGTGGTAATGCT
CTGGCTGTAAAAATGCCAGCTACGAAAGGAAAACAAGTTGAGAAGATGGATGTTGATAAGGCTGATGAGATTTCT
CTCGGCGATGAAGATGGAGAATTTGAGTATGAATACGATGCGGAATGCGAACCGGACAGCTTTGCGCAAGTCCCT
CGCTCCTCTTCCATATCTCAGATTAACTCATGGATTCTACAGGGCAGTACTATCTCCAGAAACAAAGGCTTGGTT
GAACCAGCCTATCTCCGAGGAAGATCGGGCCGCTCTTCGTGGCTTTGA
Transcript >Agabi119p4|564700
ATGCTTGCCATAGTCAACGGCTCCGATAATTCGGCTTGGGAGATGAGTGGTTCCCCTGTTCCTCCTCTGCCAACC
ACAGATCCGGTTGAGATACGAGCTCGTTCTCTCCTCTCGGCCCGAGCATCTGCTATTATCAAGTCTCATCTCCCA
AATTCGATGCTCAGTCAAGCGGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGTTAGAAGGCCAGTACGGC
CAGAAAGGACCGACATTCGCTTACGAGCGTTTTGTCACGGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCA
TCATCTGCGATTGCAGATCTCTATGCACTATTTGCCGCTGTTGAAAGCACCGGTGCGTTGATCCATGAATCGATC
CGCACCATGATGCTCCTCAACGCTCTCCCAAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGG
TCGGTTGCCGATCTTAAATGGGAGGAAACCCGTGCCCGCATCATCGCTGCATGGCGCAACCCCCATACAGTTGCC
AATGCTGCGCGTTTCTGCCAGCAGAACCAGCCGAAACCCAAATGGGACAACAAAAAACCCGATCAAGGTCAGGGT
AAGTCCCAAGGCTCTGGTTCCAGTTTTGGCTCCGGCCAGAATCAAAACAAGCAACAACAACCTCAGCAGAAGAAG
GAAGGTGAGCAGCAGAATGAGAACAACAAGAAGAAGAGAACCCGCTCCCATAAAAAGAAGCAGGGTAATGAGGCA
TCTACAGCCTCTATCGAAGAAGTCAAGGATACCACTTCTGACTATTCCGCTTCTTCTGCCATCACCTCAATGGTG
CGGCTCACATCCACCTCTACTCGCGCGAAAGTTGATGAGATGAAGAGCAGGTTTGTCCCGCTCCCATCTAGATCA
GATCCAAATCTAACGTGGAATAGATCGCCCAAGCTGGGCAACCATACTATTTCGGGTGAGGAATTTCTTTTCTTC
CCTGATGGTAATATGATTGATCTTTCCCCTCTGGATACTGATATTGACTCTTGGACTTTGCCTCGGCTTCATCCC
GCAACGCGAAATCTCCTATCGGACGAATCTGATGTTGATCTTGATCCATCAGACTCCGGGTCGATCTCTCGGGAC
CCTCGGAAACGTCCTTCCTCTCGCCATTCCCCCACGCCCTACGAAAGGGCCAAAACGAAAGCGTTATCCCTCTGG
GATCAACGTCTTAACACAGTGACTGTAACAGCCCCTCCAATCGAGGATGGGGCCAGTCAAGTGGGTGGTAATGCT
CTGGCTGTAAAAATGCCAGCTACGAAAGGAAAACAAGTTGAGAAGATGGATGTTGATAAGGCTGATGAGATTTCT
CTCGGCGATGAAGATGGAGAATTTGAGTATGAATACGATGCGGAATGCGAACCGGACAGCTTTGCGCAAGTCCCT
CGCTCCTCTTCCATATCTCAGATTAACTCATGGATTCTACAGGGCAGTACTATCTCCAGAAACAAAGGCTTGGTT
GAACCAGCCTATCTCCGAGGAAGATCGGGCCGCTCTTCGTGGCTTTGA
Gene >Agabi119p4|564700
ATGCTTGCCATAGTCAACGGCTCCGATAATTCGGCTTGGGAGATGAGTGGTTCCCCTGTTCCTCCTCTGCCAACC
ACAGATCCGGTTGAGATACGAGCTCGTTCTCTCCTCTCGGCCCGAGCATCTGCTATTATCAAGTCTCATCTCCCA
AATTCGATGCTCAGTCAAGCGGCCGCTCAAACGGACGCTAGAGCTCTTTGGAGTTGGTTAGAAGGCCAGTACGGC
CAGAAAGGACCGACATTCGCTTACGAGCGTTTTGTCACGGCTCAAAATTTCAAAATAAACGACTCCGCCGATCCA
TCATCTGCGATTGCAGATCTCTATGCACTATTTGCCGCTGTTGAAAGCACCGGTGCGTTGATCCATGAATCGATC
CGCACCATGATGCTCCTCAACGCTCTCCCAAACCGGTTCGAGCATGTTGCTTCGAACATTCTAGCTGAGAAAAGG
TCGGTTGCCGATCTTAAATGGGAGGAAACCCGTGCCCGCATCATCGCTGCATGGCGCAACCCCCATACAGTTGCC
AATGCTGCGCGTTTCTGCCAGCAGAACCAGCCGAAACCCAAATGGGACAACAAAAAACCCGATCAAGGTCAGGGT
AAGTCCCAAGGCTCTGGTTCCAGTTTTGGCTCCGGCCAGAATCAAAACAAGCAACAACAACCTCAGCAGAAGAAG
GAAGGTGAGCAGCAGAATGAGAACAACAAGAAGAAGAGAACCCGCTCCCATAAAAAGAAGCAGGGTAATGAGGCA
TCTACAGCCTCTATCGAAGAAGTCAAGGATACCACTTCTGACTATTCCGCTTCTTCTGCCATCACCTCAATGGTG
CGGCTCACATCCACCTCTACTCGCGCGAAAGTTGATGAGATGAAGAGCAGGTTTGTCCCGCTCCCATCTAGATCA
GATCCAAATCTAACGTGGAATAGATCGCCCAAGCTGGGCAACCATACTATTTCGGGTGAGGAATTTCTTTTCTTC
CCTGATGGTAATATGATTGATCTTTCCCCTCTGGATACTGATATTGACTCTTGGACTTTGCCTCGGCTTCATCCC
GCAACGCGAAATCTCCTATCGGACGAATCTGATGTTGATCTTGATCCATCAGACTCCGGGTCGATCTCTCGGGAC
CCTCGGAAACGTCCTTCCTCTCGCCATTCCCCCACGCCCTACGAAAGGGCCAAAACGAAAGCGTTATCCCTCTGG
GATCAACGTCTTAACACAGTGACTGTAACAGCCCCTCCAATCGAGGATGGGGCCAGTCAAGTGGGTGGTAATGCT
CTGGCTGTAAAAATGCCAGCTACGAAAGGAAAACAAGTTGAGAAGATGGATGTTGATAAGGCTGATGAGATTTCT
CTCGGCGATGAAGATGGAGAATTTGAGTATGAATACGATGCGGAATGCGAACCGGACAGCTTTGCGCAAGTCCCT
CGCTCCTCTTCCATATCTCAGATTAACTCATGGATTCTACAGGGCAGTACTATCTCCAGAAACAAAGGCTTGGTT
GAACCAGCCTATCTCCGAGGAAGATCGGGCCGCTCTTCGTGGCTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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