© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|564650 |
| Gene name | |
| Location | scaffold_01a:2997028..2998054 |
| Strand | - |
| Gene length (bp) | 1026 |
| Transcript length (bp) | 1026 |
| Coding sequence length (bp) | 1026 |
| Protein length (aa) | 342 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00665 | rve | Integrase core domain | 5.0E-11 | 238 | 335 |
| PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 1.2E-08 | 180 | 223 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P10978|POLX_TOBAC | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 | 29 | 341 | 1.0E-20 |
| sp|P04146|COPIA_DROME | Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 | 108 | 341 | 3.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0015074 | DNA integration | Yes |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|564650 MNPICEVLHACHSNCPGCKTRKNLEKHSWLLDSGASCHFTPNLEDFAHIQRGNFGIVHTANKNSVLKIEGRGHVL IEHTVKDISTGKEFKSVSKLWPVFYVNGMNHRLLSTAQLLKSGLKLESTKDGSTFKNEAGRAVLSARPEGLFGRM HIVECIFLKHSKTEPYLLNANGILRLPDYVIWHRRLGHPSDNVLKKFFEETQGVPKINIPQQKPVCDGCVCGKLT QQSFPQSEKRATSALELVHSDLFELPVLSYHKYKWVMTLLDDYSGLAQIVMLTKKSDAVLQLINILKQSATQSDQ KIKRLRTDRGGEYVNDTLSTYLKSQGIVHELSAPNTHQQNG* |
| Coding | >Agabi119p4|564650 ATGAATCCAATATGTGAAGTTCTCCATGCCTGTCATTCAAACTGTCCGGGTTGCAAAACCCGAAAGAATCTAGAA AAACATAGTTGGTTGCTCGATAGTGGCGCTTCGTGCCACTTCACGCCGAACCTCGAGGATTTCGCACATATACAA CGTGGAAACTTCGGTATCGTGCACACTGCAAACAAAAACTCCGTGCTCAAAATAGAGGGCCGCGGACATGTTTTG ATCGAGCATACCGTAAAAGATATTTCCACGGGAAAAGAGTTTAAATCTGTATCAAAGCTCTGGCCTGTGTTCTAT GTCAACGGAATGAATCATAGACTTCTTTCGACTGCTCAGTTGTTAAAATCTGGACTTAAACTAGAGTCTACAAAA GATGGATCTACCTTCAAAAATGAGGCAGGTCGAGCGGTTCTTAGTGCCCGTCCGGAAGGTCTCTTCGGCAGAATG CACATTGTTGAGTGTATCTTCTTAAAACACTCCAAAACAGAACCATATTTGCTCAATGCAAACGGAATTCTCCGG CTCCCTGACTATGTCATTTGGCATCGTAGATTAGGTCATCCTTCTGATAATGTGTTGAAGAAATTCTTCGAGGAA ACGCAAGGAGTACCAAAGATTAATATTCCACAACAGAAACCGGTTTGTGATGGTTGTGTTTGTGGCAAACTTACG CAACAATCATTCCCACAATCGGAAAAACGTGCTACTTCAGCGCTCGAACTGGTCCACTCGGATTTATTCGAACTC CCCGTCCTCTCTTATCACAAATATAAATGGGTGATGACTTTGCTTGATGACTATTCTGGTCTCGCTCAGATCGTC ATGTTAACCAAGAAAAGTGATGCCGTGTTACAGTTGATTAATATCCTAAAACAGTCGGCTACTCAATCTGATCAA AAGATCAAAAGATTGCGTACAGATCGAGGAGGAGAGTATGTCAATGATACGCTCTCGACATACCTAAAGTCACAA GGCATTGTGCATGAACTCTCAGCTCCCAATACGCACCAGCAAAATGGTTGA |
| Transcript | >Agabi119p4|564650 ATGAATCCAATATGTGAAGTTCTCCATGCCTGTCATTCAAACTGTCCGGGTTGCAAAACCCGAAAGAATCTAGAA AAACATAGTTGGTTGCTCGATAGTGGCGCTTCGTGCCACTTCACGCCGAACCTCGAGGATTTCGCACATATACAA CGTGGAAACTTCGGTATCGTGCACACTGCAAACAAAAACTCCGTGCTCAAAATAGAGGGCCGCGGACATGTTTTG ATCGAGCATACCGTAAAAGATATTTCCACGGGAAAAGAGTTTAAATCTGTATCAAAGCTCTGGCCTGTGTTCTAT GTCAACGGAATGAATCATAGACTTCTTTCGACTGCTCAGTTGTTAAAATCTGGACTTAAACTAGAGTCTACAAAA GATGGATCTACCTTCAAAAATGAGGCAGGTCGAGCGGTTCTTAGTGCCCGTCCGGAAGGTCTCTTCGGCAGAATG CACATTGTTGAGTGTATCTTCTTAAAACACTCCAAAACAGAACCATATTTGCTCAATGCAAACGGAATTCTCCGG CTCCCTGACTATGTCATTTGGCATCGTAGATTAGGTCATCCTTCTGATAATGTGTTGAAGAAATTCTTCGAGGAA ACGCAAGGAGTACCAAAGATTAATATTCCACAACAGAAACCGGTTTGTGATGGTTGTGTTTGTGGCAAACTTACG CAACAATCATTCCCACAATCGGAAAAACGTGCTACTTCAGCGCTCGAACTGGTCCACTCGGATTTATTCGAACTC CCCGTCCTCTCTTATCACAAATATAAATGGGTGATGACTTTGCTTGATGACTATTCTGGTCTCGCTCAGATCGTC ATGTTAACCAAGAAAAGTGATGCCGTGTTACAGTTGATTAATATCCTAAAACAGTCGGCTACTCAATCTGATCAA AAGATCAAAAGATTGCGTACAGATCGAGGAGGAGAGTATGTCAATGATACGCTCTCGACATACCTAAAGTCACAA GGCATTGTGCATGAACTCTCAGCTCCCAATACGCACCAGCAAAATGGTTGA |
| Gene | >Agabi119p4|564650 ATGAATCCAATATGTGAAGTTCTCCATGCCTGTCATTCAAACTGTCCGGGTTGCAAAACCCGAAAGAATCTAGAA AAACATAGTTGGTTGCTCGATAGTGGCGCTTCGTGCCACTTCACGCCGAACCTCGAGGATTTCGCACATATACAA CGTGGAAACTTCGGTATCGTGCACACTGCAAACAAAAACTCCGTGCTCAAAATAGAGGGCCGCGGACATGTTTTG ATCGAGCATACCGTAAAAGATATTTCCACGGGAAAAGAGTTTAAATCTGTATCAAAGCTCTGGCCTGTGTTCTAT GTCAACGGAATGAATCATAGACTTCTTTCGACTGCTCAGTTGTTAAAATCTGGACTTAAACTAGAGTCTACAAAA GATGGATCTACCTTCAAAAATGAGGCAGGTCGAGCGGTTCTTAGTGCCCGTCCGGAAGGTCTCTTCGGCAGAATG CACATTGTTGAGTGTATCTTCTTAAAACACTCCAAAACAGAACCATATTTGCTCAATGCAAACGGAATTCTCCGG CTCCCTGACTATGTCATTTGGCATCGTAGATTAGGTCATCCTTCTGATAATGTGTTGAAGAAATTCTTCGAGGAA ACGCAAGGAGTACCAAAGATTAATATTCCACAACAGAAACCGGTTTGTGATGGTTGTGTTTGTGGCAAACTTACG CAACAATCATTCCCACAATCGGAAAAACGTGCTACTTCAGCGCTCGAACTGGTCCACTCGGATTTATTCGAACTC CCCGTCCTCTCTTATCACAAATATAAATGGGTGATGACTTTGCTTGATGACTATTCTGGTCTCGCTCAGATCGTC ATGTTAACCAAGAAAAGTGATGCCGTGTTACAGTTGATTAATATCCTAAAACAGTCGGCTACTCAATCTGATCAA AAGATCAAAAGATTGCGTACAGATCGAGGAGGAGAGTATGTCAATGATACGCTCTCGACATACCTAAAGTCACAA GGCATTGTGCATGAACTCTCAGCTCCCAATACGCACCAGCAAAATGGTTGA |