Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|562600
Gene name
Locationscaffold_01a:2469571..2470146
Strand-
Gene length (bp)575
Transcript length (bp)255
Coding sequence length (bp)255
Protein length (aa) 85

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 1.8E-22 10 77

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2 3 82 2.0E-37
sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3 3 82 2.0E-37
sp|Q2HJH0|LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3 3 82 2.0E-37
sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3 3 82 2.0E-37
sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5 OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1 1 82 2.0E-35
[Show all]
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Swissprot ID Swissprot Description Start End E-value
sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2 3 82 2.0E-37
sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3 3 82 2.0E-37
sp|Q2HJH0|LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3 3 82 2.0E-37
sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3 3 82 2.0E-37
sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5 OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1 1 82 2.0E-35
sp|Q9FKB0|LSM5_ARATH Sm-like protein LSM5 OS=Arabidopsis thaliana GN=LSM5 PE=1 SV=1 3 80 6.0E-33
sp|O42978|LSM5_SCHPO U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm5 PE=1 SV=2 1 78 9.0E-29
sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1 SV=1 4 78 2.0E-20
sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=1 SV=2 7 81 4.0E-08
sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2 7 81 4.0E-08
sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3 7 81 4.0E-08
sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm4 PE=1 SV=1 5 75 4.0E-07
sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1 7 77 8.0E-07
sp|Q9LMN4|LSM3A_ARATH Sm-like protein LSM3A OS=Arabidopsis thaliana GN=LSM3A PE=1 SV=1 7 60 8.0E-07
sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0875 PE=1 SV=1 7 81 9.0E-07
sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1518.2 PE=3 SV=1 7 77 9.0E-07
sp|Q9C6K5|LSM3B_ARATH Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1 7 60 1.0E-06
sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_0339 PE=3 SV=1 7 77 2.0E-06
sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB06500 PE=1 SV=1 7 77 2.0E-06
sp|Q5JIE0|RUXX_THEKO Putative snRNP Sm-like protein OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3 SV=1 7 77 3.0E-06
sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1 7 81 4.0E-06
sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain NA1) GN=TON_0644 PE=3 SV=1 7 81 4.0E-06
sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3195 PE=3 SV=1 7 77 6.0E-06
sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1 7 77 8.0E-06
sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=Mbur_2181 PE=3 SV=1 7 77 8.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|562600
MASQILPLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKETKLSQTLLNGNNICML
IPGSTGPGE*
Coding >Agabi119p4|562600
ATGGCTTCGCAAATCCTACCTCTCGAATTAATTGACAGATGCATCGGTTCAAAGATCTGGGTTGTAATGAAGAAT
GATCGCGAATTTTCTGGGACGCTGCTTGGATTTGATGACTTCGTTAATATGGTTCTAGAGGATGTCATTGAATAT
GAGACGACGCCAGAGGGTAAAAAGGAGACAAAACTTTCGCAAACGCTACTCAATGGGAATAACATCTGCATGTTG
ATACCTGGAAGTACGGGTCCTGGGGAGTAG
Transcript >Agabi119p4|562600
ATGGCTTCGCAAATCCTACCTCTCGAATTAATTGACAGATGCATCGGTTCAAAGATCTGGGTTGTAATGAAGAAT
GATCGCGAATTTTCTGGGACGCTGCTTGGATTTGATGACTTCGTTAATATGGTTCTAGAGGATGTCATTGAATAT
GAGACGACGCCAGAGGGTAAAAAGGAGACAAAACTTTCGCAAACGCTACTCAATGGGAATAACATCTGCATGTTG
ATACCTGGAAGTACGGGTCCTGGGGAGTAG
Gene >Agabi119p4|562600
ATGGCTTCGCAAATCCTACCTCTCGGTTCGCGTCCCACCTGATTGCGACCTGGGACGAGAAACTAAACGGATCCC
AGAATTAATTGACAGATGCATCGGTTCAAAGATCTGGGTTGTAATGAAGAATGATCGCGAATTTTCTGGGACGCT
GCTTGGATTTGATGACTTCGTTAGTGAGCAAACCTACTATAAACCCTTGGCGGGTATCTGATTTGTCTCTTTTCC
TAGATATGGTTCTAGAGGATGTCATTGAATAGTGAGTCATAGTTCTACCAGTTGTACGGGGTTGGAATCTCGTTA
ATGATACCTTTGCACTTTCATCGCGCCATATGTGCTACTCTTACTCATTCAATGTGACTTGTGCGAAACTAGTGA
GACGACGCCAGAGGGTAAAAAGGAGACAAAACTTTCGCAAACGCTACTCAATGGGAATAACATCTGCATGGTGCG
CGCGTCGTCCTGATCTACGACAGCCTAGTTTTATTGACGTGTGACTCTGTCTGTTTAACTCTTCGTTGACTTTGG
TTTCGGCGATTTTACAGTTGATACCTGGAAGTACGGGTCCTGGGGAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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