Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|555500
Gene name
Locationscaffold_01a:267803..269990
Strand+
Gene length (bp)2187
Transcript length (bp)1674
Coding sequence length (bp)1674
Protein length (aa) 558

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07970 COPIIcoated_ERV Endoplasmic reticulum vesicle transporter 1.6E-36 175 329
PF13850 ERGIC_N Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 2.5E-20 20 107

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q04651|ERV41_YEAST ER-derived vesicles protein ERV41 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV41 PE=1 SV=1 18 344 1.0E-42
sp|Q4R5C3|ERGI2_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Macaca fascicularis GN=ERGIC2 PE=2 SV=1 20 343 1.0E-40
sp|Q5EHU7|ERGI2_GECJA Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Gecko japonicus GN=ERGIC2 PE=2 SV=1 20 342 4.0E-40
sp|Q9CR89|ERGI2_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Mus musculus GN=Ergic2 PE=1 SV=1 20 343 4.0E-40
sp|Q96RQ1|ERGI2_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Homo sapiens GN=ERGIC2 PE=1 SV=2 20 343 6.0E-40
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Swissprot ID Swissprot Description Start End E-value
sp|Q04651|ERV41_YEAST ER-derived vesicles protein ERV41 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV41 PE=1 SV=1 18 344 1.0E-42
sp|Q4R5C3|ERGI2_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Macaca fascicularis GN=ERGIC2 PE=2 SV=1 20 343 1.0E-40
sp|Q5EHU7|ERGI2_GECJA Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Gecko japonicus GN=ERGIC2 PE=2 SV=1 20 342 4.0E-40
sp|Q9CR89|ERGI2_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Mus musculus GN=Ergic2 PE=1 SV=1 20 343 4.0E-40
sp|Q96RQ1|ERGI2_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Homo sapiens GN=ERGIC2 PE=1 SV=2 20 343 6.0E-40
sp|O94283|ERV41_SCHPO ER-derived vesicles protein 41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erv41 PE=1 SV=1 18 346 5.0E-38
sp|Q7T2D4|ERGI2_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 2 OS=Danio rerio GN=ergic2 PE=2 SV=1 22 343 2.0E-37
sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1 16 340 1.0E-28
sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1 20 340 2.0E-27
sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1 20 340 2.0E-27
sp|Q54DW2|ERGI3_DICDI Probable endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3 SV=1 18 329 9.0E-27
sp|Q9CQE7|ERGI3_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus GN=Ergic3 PE=1 SV=1 16 340 8.0E-26
sp|Q4R8X1|ERGI3_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1 16 329 2.0E-25
sp|Q5R8G3|ERGI3_PONAB Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1 16 329 3.0E-25
sp|Q9Y282|ERGI3_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens GN=ERGIC3 PE=1 SV=1 16 329 3.0E-25
sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=ERGIC3 PE=2 SV=1 16 340 4.0E-24
sp|P39727|ERV46_YEAST ER-derived vesicles protein ERV46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV46 PE=1 SV=2 18 325 3.0E-17
sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1 18 330 6.0E-15
sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1 163 351 7.0E-10
sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4 PE=2 SV=1 167 329 2.0E-09
sp|Q969X5|ERGI1_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens GN=ERGIC1 PE=1 SV=1 22 329 3.0E-09
sp|Q9DC16|ERGI1_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Mus musculus GN=Ergic1 PE=1 SV=1 22 329 1.0E-08
sp|Q4V8Y6|ERGI1_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Danio rerio GN=ergic1 PE=2 SV=1 173 329 8.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 44 0.5

Transmembrane Domains

Domain # Start End Length
1 42 64 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|555500
MATSEDDSVLKKLDAAAAPLAKFDAFPKVPSAFKARSESRGFMTIFVMLVALLLMLNDIGEYIWGWPEFKFAVDQ
DNAPYMFVNLDMVVNMQCRYLSVDLRDVVGDRLLLSGGLQRDGVKFNIGEATALKEHSKGLSARQALSQSRKSRG
FFDSLLRRNSEPKFKPTYNHVPDGGACRIYGTMPVKRVTANLHITTVGHGYSSYQHVDHNQMNLSHVITEFSFGP
YFPEIVQPLDESFEVTQDHFTAYQYFLHVVPTTYIAPRTSPLRTNQYSVTHYTRQVEHNKGTPGIFFKFDLDPLN
ITIHQKTTTLIQLLIRCVGVIGGVFVCMGYAIRVTTRAVEVVAGSDQDQGIVAAESSSIKTGLRAKWGGGDLRSR
RTQSGRMVRQGNGWVLEGSGKSPNYGASPLNPNTPGLPSPFISTMGSPPMGAQQSGPHSGVGLGFPISTFGPNPT
INGGSHQSGHMRTPSLLGGPPPRTPHSQLQVNGASNPNSPSLPSTMGGEQPGTPSHVVFPPTPNPANGNGNGMNG
GTRLEDIETPSNTMTPEVINVNAYEPLAKSEL*
Coding >Agabi119p4|555500
ATGGCCACGTCCGAGGACGACTCGGTTCTCAAAAAACTCGATGCCGCCGCAGCACCTCTTGCCAAATTCGATGCT
TTTCCAAAAGTACCTTCGGCGTTTAAAGCTCGTTCGGAGAGCCGAGGGTTCATGACCATATTTGTCATGCTCGTT
GCGTTGCTGTTGATGCTTAACGATATTGGGGAATATATCTGGGGTTGGCCAGAGTTCAAGTTTGCGGTTGATCAG
GATAATGCGCCGTATATGTTTGTTAATTTGGATATGGTGGTTAATATGCAATGTCGGTACTTGAGTGTCGACTTG
AGAGATGTCGTTGGTGATCGACTACTTCTGAGTGGTGGACTCCAACGAGACGGTGTCAAATTCAATATTGGCGAA
GCTACTGCTTTAAAGGAACATTCGAAAGGTCTTTCCGCGAGACAAGCTCTCTCTCAATCAAGAAAATCGAGGGGA
TTTTTCGATTCACTCCTTAGACGAAACTCTGAACCTAAGTTCAAACCGACTTATAACCATGTACCGGATGGTGGT
GCTTGTAGGATTTATGGTACTATGCCCGTCAAACGGGTTACTGCGAACCTTCATATTACTACCGTCGGTCATGGA
TATTCAAGTTATCAGCATGTCGATCATAACCAAATGAATCTCTCACATGTTATCACTGAATTCTCATTCGGTCCC
TATTTCCCTGAAATCGTACAGCCTCTTGACGAGTCTTTTGAAGTCACACAAGACCATTTTACCGCGTATCAGTAT
TTCTTACATGTGGTGCCGACAACTTATATCGCTCCCCGTACCTCTCCTCTACGAACAAACCAGTATAGTGTTACG
CATTATACTAGGCAGGTGGAACATAACAAAGGCACTCCCGGTATCTTTTTCAAATTCGATTTGGACCCGTTGAAT
ATCACGATTCATCAAAAGACTACAACTTTGATACAACTATTAATTCGGTGTGTTGGTGTTATAGGAGGTGTATTC
GTATGCATGGGTTACGCCATCCGCGTAACAACACGTGCCGTTGAAGTCGTTGCTGGTTCAGATCAAGATCAAGGT
ATCGTAGCAGCCGAATCATCCTCCATTAAAACCGGTCTCAGGGCCAAATGGGGTGGTGGAGATTTACGTTCTAGA
AGAACACAGTCTGGTAGAATGGTTAGACAGGGTAATGGATGGGTTTTGGAAGGGAGCGGCAAGAGTCCGAATTAT
GGAGCTTCGCCTTTGAATCCGAATACGCCGGGGTTGCCTTCACCTTTTATATCGACGATGGGTTCGCCACCGATG
GGGGCGCAACAGTCGGGACCGCACAGTGGAGTTGGATTAGGGTTTCCTATTTCGACGTTTGGTCCAAATCCGACT
ATCAATGGTGGTAGTCATCAGAGTGGACATATGCGCACTCCTTCGTTATTAGGCGGGCCGCCTCCTAGAACACCT
CATAGCCAGTTGCAAGTGAATGGCGCTTCGAATCCTAATAGTCCTTCACTGCCATCGACTATGGGTGGTGAACAA
CCAGGAACACCTTCGCATGTGGTTTTCCCTCCGACACCTAATCCTGCAAATGGAAATGGGAATGGGATGAATGGA
GGGACGAGATTAGAAGACATTGAAACACCGTCTAATACTATGACTCCTGAAGTGATCAACGTCAACGCCTACGAG
CCACTGGCAAAGAGTGAACTCTGA
Transcript >Agabi119p4|555500
ATGGCCACGTCCGAGGACGACTCGGTTCTCAAAAAACTCGATGCCGCCGCAGCACCTCTTGCCAAATTCGATGCT
TTTCCAAAAGTACCTTCGGCGTTTAAAGCTCGTTCGGAGAGCCGAGGGTTCATGACCATATTTGTCATGCTCGTT
GCGTTGCTGTTGATGCTTAACGATATTGGGGAATATATCTGGGGTTGGCCAGAGTTCAAGTTTGCGGTTGATCAG
GATAATGCGCCGTATATGTTTGTTAATTTGGATATGGTGGTTAATATGCAATGTCGGTACTTGAGTGTCGACTTG
AGAGATGTCGTTGGTGATCGACTACTTCTGAGTGGTGGACTCCAACGAGACGGTGTCAAATTCAATATTGGCGAA
GCTACTGCTTTAAAGGAACATTCGAAAGGTCTTTCCGCGAGACAAGCTCTCTCTCAATCAAGAAAATCGAGGGGA
TTTTTCGATTCACTCCTTAGACGAAACTCTGAACCTAAGTTCAAACCGACTTATAACCATGTACCGGATGGTGGT
GCTTGTAGGATTTATGGTACTATGCCCGTCAAACGGGTTACTGCGAACCTTCATATTACTACCGTCGGTCATGGA
TATTCAAGTTATCAGCATGTCGATCATAACCAAATGAATCTCTCACATGTTATCACTGAATTCTCATTCGGTCCC
TATTTCCCTGAAATCGTACAGCCTCTTGACGAGTCTTTTGAAGTCACACAAGACCATTTTACCGCGTATCAGTAT
TTCTTACATGTGGTGCCGACAACTTATATCGCTCCCCGTACCTCTCCTCTACGAACAAACCAGTATAGTGTTACG
CATTATACTAGGCAGGTGGAACATAACAAAGGCACTCCCGGTATCTTTTTCAAATTCGATTTGGACCCGTTGAAT
ATCACGATTCATCAAAAGACTACAACTTTGATACAACTATTAATTCGGTGTGTTGGTGTTATAGGAGGTGTATTC
GTATGCATGGGTTACGCCATCCGCGTAACAACACGTGCCGTTGAAGTCGTTGCTGGTTCAGATCAAGATCAAGGT
ATCGTAGCAGCCGAATCATCCTCCATTAAAACCGGTCTCAGGGCCAAATGGGGTGGTGGAGATTTACGTTCTAGA
AGAACACAGTCTGGTAGAATGGTTAGACAGGGTAATGGATGGGTTTTGGAAGGGAGCGGCAAGAGTCCGAATTAT
GGAGCTTCGCCTTTGAATCCGAATACGCCGGGGTTGCCTTCACCTTTTATATCGACGATGGGTTCGCCACCGATG
GGGGCGCAACAGTCGGGACCGCACAGTGGAGTTGGATTAGGGTTTCCTATTTCGACGTTTGGTCCAAATCCGACT
ATCAATGGTGGTAGTCATCAGAGTGGACATATGCGCACTCCTTCGTTATTAGGCGGGCCGCCTCCTAGAACACCT
CATAGCCAGTTGCAAGTGAATGGCGCTTCGAATCCTAATAGTCCTTCACTGCCATCGACTATGGGTGGTGAACAA
CCAGGAACACCTTCGCATGTGGTTTTCCCTCCGACACCTAATCCTGCAAATGGAAATGGGAATGGGATGAATGGA
GGGACGAGATTAGAAGACATTGAAACACCGTCTAATACTATGACTCCTGAAGTGATCAACGTCAACGCCTACGAG
CCACTGGCAAAGAGTGAACTCTGA
Gene >Agabi119p4|555500
ATGGCCACGTCCGAGGACGACTCGGTTCTCAAAAAACTCGATGCCGCCGCAGCACCTCTTGCCAAATTCGATGCT
TTTCCAAAAGTACCTTCGGCGTTTAAAGCTCGTTCGGAGAGCCGAGGGTTCATGACCATATTTGTCATGCTCGTT
GCGTTGCTGTTGATGCTTAACGATATTGGGGAATATATCTGGGGTTGGCCAGAGTTCAAGTTTGCGGTTGATCAG
GATAATGCGCCGTATATGTTTGTTAATTTGGATATGGTGGTTAATATGCAATGTCGGTGTGAGTGACATTTTGGT
TCTTGATGCGAATGATTTTTTGATGGACGTCTTTGATAGACTTGAGTGTCGACTTGAGAGATGTCGTTGGTGATC
GACTACTTCTGAGTGGTGGACTCCAACGAGACGGTGTCAAATTCAATATTGGCGAAGCTACTGCTTTAAAGTTCG
TCTCTACCCAACTTTTCCGTCGTGGCTGTATACCAACTAGATATTCTCAGGGAACATTCGAAAGGTCTTTCCGCG
AGACAAGCTCTCTCTCAATCAAGAAAATCGAGGGGATTTTTCGATTCACTCCTTAGACGAAACTCTGAACCTAAG
TTCAAACCGACTTATAACCATGTACCGGATGGTGGTGCTTGTAGGATTTATGGTACTATGCCCGTCAAACGGGTT
ACTGGTACGTATTTGCTGGTTCGTCTTAGTTGAAGTGGTCTGCTGACGGTGAAATGCTTTTTATATATTAGCGAA
CCTTCATATTACTACCGTCGGTCATGGATATTCAAGTTATCAGCATGTCGATCATAACCGTTCGTCCTGTCCTTC
ACTGAACTTGGTTCTTGTTGGGTTTATGCGTTCCTTTCAGAAATGAATCTCTCACATGTTATCACTGAATTCTCA
TTCGGTCCCTATTTCCCTGAAATCGTACAGCCTCTTGACGAGTCTTTTGAAGTCACACAAGACCGTGAGTCCTCT
CCGAAAATATCCGCTTATATATATTTAATAATATATGCATAGATTTTACCGCGTATCAGTATTTCTTACATGTGG
TGCCGACAACTTATATCGCTCCCCGTACCTCTCCTCTACGAACAAACCAGTATAGTGTTACGCATTATACTAGGC
AGGTGGAACATAACAAAGGCACTCCCGGTATCTTTTTCAAATTCGATTTGGACCCGTTGAATATCACGATTCATC
AAAAGACTACAACTTTGATACAACTATTAATTCGGTACGATTTTCTGAGTTTTTTTCTCTATTCTTCGAATAACT
TATGCCATTGTTGTTATAAAGGTGTGTTGGTGTTATAGGAGGTGTATTCGTATGCATGGGTTACGCCATCCGCGT
AACAACACGTGCCGTTGAAGTCGTTGCTGGTTCAGATCAAGATCAAGGTATCGTAGCAGCCGAATCATCCTCCAT
TAAAACCGGTCTCAGGGCCAAATGGGGTGGTGGAGATTTACGTTCTAGAAGAACACAGTCTGGTAGAATGGTTAG
ACAGGGTAATGGATGGGTTTTGGAAGGGAGCGGCAAGAGTCCGAATTATGGAGCTTCGCCTTTGAATCCGAATAC
GCCGGGGTTGCCTTCACCTTTTATATCGACGATGGGTTCGCCACCGATGGGGGCGCAACAGTCGGGACCGCACAG
TGGAGTTGGATTAGGGTTTCCTATTTCGACGTTTGGTCCAAATCCGACTATCAATGGTGGTAGTCATCAGAGTGG
ACATATGCGCACTCCTTCGTTATTAGGCGGGCCGCCTCCTAGAACACCTCATAGCCAGTTGCAAGTGAATGGCGC
TTCGAATCCTAATAGTCCTTCACTGCCATCGACTATGGGTGGTGAACAACCAGGAACACCTTCGCATGTGGTTTT
CCCTCCGACACCTAATCCTGCAAATGGAAATGGGAATGGGATGAATGGAGGGACGTTTGCGATACAACAACGGCA
AGAAGATCGGATGAAAAAAGATGATTGAGGAGATGTGTGTTTTTTTTTTCAGTTCTTTCTTTTTTTTAATGACGT
TTGTATTAAGTAGAAGGTATGCAGTCAGTTTTTATATACCAGATCTTTTTGCTCTTCTATAATGTTATGCCCAGC
TGAGACATTGAAACACCGTCTAATACTATGACTCCTGAAGTGATCAACGTCAACGCCTACGAGCCACTGGCAAAG
AGTGAACTCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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