Protein ID | Agabi119p4|555450 |
Gene name | |
Location | scaffold_01a:266905..267675 |
Strand | + |
Gene length (bp) | 770 |
Transcript length (bp) | 537 |
Coding sequence length (bp) | 537 |
Protein length (aa) | 179 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01127 | Sdh_cyt | Succinate dehydrogenase/Fumarate reductase transmembrane subunit | 1.3E-21 | 56 | 174 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O74882|SDH3_SCHPO | Succinate dehydrogenase cytochrome B subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh3 PE=3 SV=1 | 12 | 174 | 4.0E-35 |
sp|P70097|C560_CRIGR | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Cricetulus griseus GN=SDHC PE=2 SV=1 | 20 | 173 | 8.0E-20 |
sp|P33421|SDH3_YEAST | Succinate dehydrogenase [ubiquinone] cytochrome b subunit, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH3 PE=1 SV=1 | 47 | 166 | 2.0E-19 |
sp|Q04487|SHH3_YEAST | Mitochondrial inner membrane protein SHH3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHH3 PE=3 SV=1 | 36 | 175 | 2.0E-17 |
sp|P80481|C560_RECAM | Succinate dehydrogenase cytochrome b560 subunit OS=Reclinomonas americana GN=SDH3 PE=3 SV=1 | 49 | 173 | 5.0E-16 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O74882|SDH3_SCHPO | Succinate dehydrogenase cytochrome B subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh3 PE=3 SV=1 | 12 | 174 | 4.0E-35 |
sp|P70097|C560_CRIGR | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Cricetulus griseus GN=SDHC PE=2 SV=1 | 20 | 173 | 8.0E-20 |
sp|P33421|SDH3_YEAST | Succinate dehydrogenase [ubiquinone] cytochrome b subunit, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH3 PE=1 SV=1 | 47 | 166 | 2.0E-19 |
sp|Q04487|SHH3_YEAST | Mitochondrial inner membrane protein SHH3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHH3 PE=3 SV=1 | 36 | 175 | 2.0E-17 |
sp|P80481|C560_RECAM | Succinate dehydrogenase cytochrome b560 subunit OS=Reclinomonas americana GN=SDH3 PE=3 SV=1 | 49 | 173 | 5.0E-16 |
sp|P35720|C560_BOVIN | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Bos taurus GN=SDHC PE=1 SV=2 | 14 | 175 | 5.0E-16 |
sp|P41955|C560_CAEBR | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis briggsae GN=mev-1 PE=2 SV=1 | 39 | 168 | 6.0E-16 |
sp|P41956|C560_CAEEL | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis elegans GN=mev-1 PE=2 SV=1 | 49 | 166 | 1.0E-15 |
sp|P35721|C560_MARPO | Succinate dehydrogenase cytochrome b560 subunit OS=Marchantia polymorpha GN=SDH3 PE=3 SV=1 | 55 | 168 | 2.0E-15 |
sp|D0VWV4|C560_PIG | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Sus scrofa GN=SDHC PE=1 SV=2 | 14 | 175 | 3.0E-15 |
sp|Q9CZB0|C560_MOUSE | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Mus musculus GN=Sdhc PE=1 SV=1 | 14 | 161 | 3.0E-14 |
sp|Q99643|C560_HUMAN | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Homo sapiens GN=SDHC PE=1 SV=1 | 14 | 161 | 8.0E-14 |
sp|Q8T2T5|C560_DICDI | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhC PE=3 SV=1 | 59 | 177 | 1.0E-13 |
sp|P41085|DHSC_RICPR | Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia prowazekii (strain Madrid E) GN=sdhC PE=3 SV=1 | 49 | 175 | 6.0E-12 |
sp|Q68XP1|DHSC_RICTY | Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=sdhC PE=3 SV=1 | 49 | 175 | 1.0E-11 |
sp|Q92J99|DHSC_RICCN | Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=sdhC PE=3 SV=1 | 49 | 175 | 2.0E-11 |
sp|Q1RHB5|DHSC_RICBR | Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhC PE=3 SV=1 | 49 | 175 | 3.0E-11 |
sp|P48935|C560_CYACA | Succinate dehydrogenase cytochrome b560 subunit OS=Cyanidium caldarium GN=SDH3 PE=3 SV=1 | 58 | 152 | 1.0E-10 |
sp|Q4UKC1|DHSC_RICFE | Succinate dehydrogenase cytochrome b556 subunit OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sdhC PE=3 SV=1 | 49 | 175 | 1.0E-09 |
sp|P80478|C560_PORPU | Succinate dehydrogenase cytochrome b560 subunit OS=Porphyra purpurea GN=SDH3 PE=3 SV=1 | 56 | 148 | 8.0E-09 |
sp|P48934|C560_CHOCR | Succinate dehydrogenase cytochrome b560 subunit OS=Chondrus crispus GN=SDH3 PE=3 SV=1 | 58 | 155 | 1.0E-07 |
sp|P0DKI1|SDH32_ARATH | Succinate dehydrogenase subunit 3-2, mitochondrial OS=Arabidopsis thaliana GN=SDH3-2 PE=1 SV=1 | 59 | 106 | 4.0E-06 |
sp|P0DKI0|SDH31_ARATH | Succinate dehydrogenase subunit 3-1, mitochondrial OS=Arabidopsis thaliana GN=SDH3-1 PE=1 SV=1 | 59 | 106 | 4.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
GO:0003674 | molecular_function | No |
GO:0016491 | oxidoreductase activity | No |
GO:0003824 | catalytic activity | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 78 | 100 | 22 |
2 | 158 | 177 | 19 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Agabi119p4|555450 MSTKVLGLGPTFRRAALNPRLALRNQVVLRNGIGRRLIQTESLSPSASEGILNKQRLSRPMSPHLTIYQPQLTSV VSIFNRFAGAGLGILLYGFGLAYLVAPTTFDSVHLLTFIHELPEVVKLGGKFILAAPFSLHFFNGLRHLAWDAGK LMSLKGVYTGGYVVLGAATASTVYLTFF* |
Coding | >Agabi119p4|555450 ATGTCGACCAAGGTTCTTGGGTTGGGTCCTACGTTTAGGCGCGCTGCTTTGAACCCCCGACTAGCTCTGAGAAAC CAGGTCGTACTGCGCAATGGCATTGGCAGGAGGTTGATTCAAACAGAATCCTTATCTCCCTCAGCGAGCGAAGGA ATACTCAACAAACAACGCCTCAGCCGTCCTATGAGTCCTCATCTGACAATCTATCAACCTCAATTGACTTCTGTC GTTTCGATTTTTAACCGATTTGCTGGTGCGGGTCTCGGCATCCTGCTTTATGGATTTGGTCTTGCCTACCTTGTT GCGCCTACGACTTTTGATAGTGTGCACTTGTTGACGTTTATCCATGAACTCCCGGAAGTTGTCAAGTTGGGTGGG AAATTTATTCTCGCTGCGCCGTTTTCACTTCACTTTTTCAATGGGTTGAGGCATTTGGCCTGGGATGCTGGAAAA CTGATGAGTTTGAAAGGGGTTTATACGGGTGGATATGTTGTACTTGGAGCCGCTACAGCCTCGACTGTTTATCTA ACGTTTTTCTGA |
Transcript | >Agabi119p4|555450 ATGTCGACCAAGGTTCTTGGGTTGGGTCCTACGTTTAGGCGCGCTGCTTTGAACCCCCGACTAGCTCTGAGAAAC CAGGTCGTACTGCGCAATGGCATTGGCAGGAGGTTGATTCAAACAGAATCCTTATCTCCCTCAGCGAGCGAAGGA ATACTCAACAAACAACGCCTCAGCCGTCCTATGAGTCCTCATCTGACAATCTATCAACCTCAATTGACTTCTGTC GTTTCGATTTTTAACCGATTTGCTGGTGCGGGTCTCGGCATCCTGCTTTATGGATTTGGTCTTGCCTACCTTGTT GCGCCTACGACTTTTGATAGTGTGCACTTGTTGACGTTTATCCATGAACTCCCGGAAGTTGTCAAGTTGGGTGGG AAATTTATTCTCGCTGCGCCGTTTTCACTTCACTTTTTCAATGGGTTGAGGCATTTGGCCTGGGATGCTGGAAAA CTGATGAGTTTGAAAGGGGTTTATACGGGTGGATATGTTGTACTTGGAGCCGCTACAGCCTCGACTGTTTATCTA ACGTTTTTCTGA |
Gene | >Agabi119p4|555450 ATGTCGACCAAGGTTCTTGGGTTGGGTCCTACGTTTAGGCGCGCTGCTTTGAACCCCCGACTAGGTGAGTTATGT CGGAGCTATTCTGCGTTGTGATATTATTTACTTGATGCTAGCTCTGAGAAACCAGGTCGTACTGCGCAATGGCAT TGGCAGGAGGTATGTTTTTGAATCAAAGCAATAGAGAGTTTGGAAATTGATAATTTTGCTTAGGTTGATTCAAAC AGAATCCTTATCTCCCTCAGCGAGCGAAGGAATACTCAACAAACAACGCCTCAGCCGTCCTATGAGTCCTCATCT GACAATCTATCAACCTCAATTGACTTCTGTCGTTTCGATTTTTAACCGATTTGCTGGTGCGGGTCTCGGCATCCG TATGTATCCTTTCCTCTTTTTTTTTTACAATTTCAGACTGGACGGTTGGTTGTTATTATTTAGTGCTTTATGGAT TTGGTCTTGCCTACCTTGTTGCGCCTACGACTTTTGATAGTGTGCACTTGTTGACGTTTATCCATGAACTCCCGG AAGTTGTCAAGTTGGGTGGGAAATTTATTCTCGCTGCGCCGTTTTCACTTCACTTTTTCAATGGGTTGAGGCATT TGGCCTGGGATGCTGGAAAACGTACGTGCTTTGAATACCTGGTTTTCTCATGCGTTTTCTTATGCTGATGGTCTC TGGGGACAGTGATGAGTTTGAAAGGGGTTTATACGGGTGGATATGTTGTACTTGGAGCCGCTACAGCCTCGACTG TTTATCTAACGTTTTTCTGA |