© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|554800 |
| Gene name | |
| Location | scaffold_01a:179631..182077 |
| Strand | + |
| Gene length (bp) | 2446 |
| Transcript length (bp) | 2187 |
| Coding sequence length (bp) | 2187 |
| Protein length (aa) | 729 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6.8E-08 | 505 | 573 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 3.0E-12 | 656 | 718 |
| PF12937 | F-box-like | F-box-like | 9.2E-12 | 41 | 88 |
| PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.9E-01 | 484 | 590 |
| PF13893 | RRM_5 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9.5E-07 | 653 | 727 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74968|RU1A_SCHPO | U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1 | 499 | 728 | 2.0E-48 |
| sp|Q0DKM4|RU1A_ORYSJ | U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1 | 483 | 728 | 2.0E-45 |
| sp|A2Y0J7|RU1A_ORYSI | U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 PE=3 SV=1 | 483 | 728 | 2.0E-45 |
| sp|P08579|RU2B_HUMAN | U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 | 501 | 728 | 7.0E-45 |
| sp|Q9CQI7|RU2B_MOUSE | U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1 | 501 | 728 | 1.0E-44 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O74968|RU1A_SCHPO | U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1 | 499 | 728 | 2.0E-48 |
| sp|Q0DKM4|RU1A_ORYSJ | U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1 | 483 | 728 | 2.0E-45 |
| sp|A2Y0J7|RU1A_ORYSI | U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 PE=3 SV=1 | 483 | 728 | 2.0E-45 |
| sp|P08579|RU2B_HUMAN | U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1 | 501 | 728 | 7.0E-45 |
| sp|Q9CQI7|RU2B_MOUSE | U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1 | 501 | 728 | 1.0E-44 |
| sp|Q06AA4|SNRPA_PIG | U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=1 SV=1 | 498 | 728 | 4.0E-42 |
| sp|Q2KIR1|SNRPA_BOVIN | U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2 SV=1 | 498 | 728 | 5.0E-42 |
| sp|P09012|SNRPA_HUMAN | U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3 | 498 | 728 | 9.0E-42 |
| sp|Q62189|SNRPA_MOUSE | U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=1 SV=3 | 498 | 728 | 2.0E-41 |
| sp|O22922|RU2B1_ARATH | U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1 | 501 | 728 | 2.0E-41 |
| sp|Q39244|RU1A_ARATH | U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1 | 498 | 728 | 5.0E-41 |
| sp|P45429|SNRPA_XENLA | U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa PE=2 SV=1 | 498 | 728 | 1.0E-40 |
| sp|P43332|SNRPA_DROME | U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster GN=snf PE=1 SV=1 | 501 | 728 | 9.0E-38 |
| sp|Q10MR0|RU2B_ORYSJ | U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1 | 501 | 728 | 4.0E-37 |
| sp|B8AM21|RU2B_ORYSI | U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1 | 501 | 728 | 1.0E-36 |
| sp|Q8H1S6|RU2B2_ARATH | U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1 | 501 | 728 | 7.0E-36 |
| sp|Q54J05|RU2B_DICDI | U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1 | 501 | 726 | 5.0E-33 |
| sp|Q7LL14|RU2B_SCHPO | Probable U2 small nuclear ribonucleoprotein B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msl1 PE=1 SV=1 | 504 | 605 | 8.0E-13 |
| sp|P40567|MSL1_YEAST | U2 small nuclear ribonucleoprotein B'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSL1 PE=1 SV=1 | 504 | 587 | 9.0E-08 |
| sp|P32605|RU1A_YEAST | U1 small nuclear ribonucleoprotein A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MUD1 PE=1 SV=1 | 533 | 727 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| Orthofinder run ID | 5 |
| Orthogroup | 7468 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Agaricus bisporus var bisporus H39 | AgabiH39|000760 |
| Agaricus bisporus var bisporus H97 | AgabiH97|000760 |
| Agaricus bisporus var burnettii H119p4 | Agabi119p4|554800 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|554800 MTPFKQQKITELLTKIRNAHHGPHDRAKLSEELNDIRPPISVLPPEILSHIFQYVFHLPRKPLFRIVSLVSRHWR RVLVNTPELWAIIDLDVSSPRGKSILPTFIANSGDCALSVTFRFRGRINREEQTLVDPSVDSRIIENFGRIQSLS LTNPPISWFDGLPQLQRLQHLTLQNHEGPRVPTSIPVDRMPSVSELTLINLKSVQLDTRCLNITSLTLTQIRITT TVRIFTQCPFLKYLHLEYLDRVQDPANRFAGADGQDNNFPNKTILLPNLETLVWFVGKPQDIFVLSWQMAIITHL TVPSLKSLKWDQKVDFSGHLRSIVGFFGRVALTLTDLEFSRVGQTGTVISGEVFVDDCAVERMVFSDCGSDFVDG ILQDVKSPTRFPGLKKVEMRKNGRLVERAVVQRYVRLLKQRKGLVFNNVIIVKVLDPQTTSMAEPSPPPIQQPQP SLPQPAFVPGGQMVPGQPPPAIPGQGPMDTTPTAPAVDGQTPVVVAVEENPCETLYIQNLNEKVKPQVLQATLRG LFKSYGDVLDVVAHGNMRMRGQAFVSFDSVDSARKAMKDVQRFPLYSKPMQITFAKTRSDAVVKKLDAESYDQHK QRRDEHKKATRYTNPIKSKFRLKRMAAEMDGGAALPQSKRPAVQMPDEYLPPNKILFLQNLPESVTKDQLMSLFS QYPNLYEVRMIPTKKDIAFVEYVDEGSAGVAKDALHNYKLDGENKIKITFARK* |
| Coding | >Agabi119p4|554800 ATGACTCCTTTCAAACAACAAAAAATCACAGAACTCCTCACCAAGATACGCAATGCCCACCACGGCCCACACGAC CGCGCCAAACTCTCTGAAGAACTCAATGACATACGCCCACCCATCAGCGTCCTTCCCCCAGAAATCCTATCCCAC ATCTTTCAATACGTTTTTCATCTCCCTCGCAAACCGTTGTTTCGAATCGTCAGTCTCGTATCAAGACATTGGCGA AGAGTGCTTGTGAACACTCCAGAACTTTGGGCTATCATCGATCTGGATGTCAGTTCACCCCGTGGCAAATCGATA CTTCCAACTTTCATTGCCAATTCTGGCGATTGTGCTTTATCTGTGACTTTTAGATTTCGTGGGCGCATTAATCGG GAGGAACAAACCCTGGTTGATCCAAGTGTGGATTCACGCATCATAGAGAATTTTGGGAGGATTCAAAGTCTGAGC CTGACGAATCCACCTATATCTTGGTTCGATGGACTTCCTCAACTGCAACGTTTACAACACTTGACACTTCAAAAT CATGAAGGACCAAGAGTACCCACGAGTATCCCTGTCGATCGCATGCCCTCCGTATCCGAACTGACGCTCATCAAT CTAAAGAGCGTTCAATTGGACACGAGATGTTTAAACATCACTTCCCTGACGTTAACTCAAATACGTATCACCACC ACCGTACGAATCTTCACCCAATGTCCTTTTCTCAAATACCTTCATTTGGAATATTTGGACCGTGTACAAGATCCT GCGAATCGATTTGCGGGTGCAGATGGTCAAGACAACAATTTTCCTAATAAAACCATCTTGTTGCCGAATCTTGAA ACACTCGTATGGTTTGTCGGTAAACCACAGGATATTTTTGTTTTATCGTGGCAGATGGCGATAATCACACATTTG ACTGTTCCGTCGCTAAAGTCGTTGAAATGGGATCAGAAGGTGGATTTTTCGGGACATTTACGTTCTATTGTTGGG TTTTTTGGTCGTGTGGCTTTGACATTGACGGATCTGGAGTTTTCGAGAGTGGGACAGACTGGGACGGTTATTAGT GGGGAGGTGTTTGTGGATGATTGTGCGGTTGAGAGGATGGTGTTTTCGGATTGTGGATCTGATTTTGTGGATGGG ATACTTCAAGATGTTAAATCGCCGACTCGATTTCCGGGGTTGAAGAAGGTTGAAATGAGGAAAAATGGTAGATTG GTAGAAAGGGCGGTCGTGCAGAGATATGTGAGATTGTTGAAGCAACGAAAAGGATTGGTATTCAATAATGTTATC ATTGTCAAGGTGCTCGATCCACAAACAACTTCAATGGCCGAACCTAGTCCACCGCCAATTCAACAACCACAGCCG AGTCTACCGCAGCCTGCGTTCGTGCCTGGTGGCCAGATGGTGCCGGGTCAGCCACCACCGGCAATTCCTGGACAA GGACCTATGGATACTACTCCGACTGCTCCAGCTGTAGACGGACAAACGCCTGTTGTCGTTGCTGTAGAAGAGAAT CCATGCGAAACACTGTACATCCAGAATTTAAATGAAAAAGTGAAACCACAAGTGTTGCAAGCGACGTTGAGAGGA TTGTTCAAGTCGTATGGCGATGTGTTGGATGTGGTAGCGCATGGGAATATGAGGATGAGGGGACAGGCTTTTGTG TCGTTTGATTCGGTGGATAGTGCGAGAAAGGCGATGAAGGATGTTCAACGGTTTCCTTTATATTCGAAACCTATG CAAATTACGTTTGCAAAGACGAGGTCAGATGCTGTGGTGAAGAAATTGGATGCTGAGAGTTATGATCAGCATAAG CAGCGGAGGGATGAGCACAAAAAAGCGACTCGGTATACGAATCCGATAAAATCAAAATTCAGGTTGAAGCGTATG GCTGCTGAAATGGACGGTGGGGCTGCGCTGCCGCAATCGAAGCGACCCGCAGTACAGATGCCAGACGAGTATCTG CCGCCAAACAAGATTTTGTTCTTACAGAATCTGCCAGAGAGCGTCACAAAAGACCAGCTCATGTCGCTGTTCTCA CAGTATCCCAATTTGTACGAGGTGCGTATGATACCGACGAAAAAGGACATTGCGTTCGTCGAGTACGTGGACGAG GGGAGTGCGGGGGTGGCGAAGGATGCGCTGCACAACTACAAGCTGGATGGGGAGAACAAGATTAAGATTACGTTT GCTCGCAAGTAG |
| Transcript | >Agabi119p4|554800 ATGACTCCTTTCAAACAACAAAAAATCACAGAACTCCTCACCAAGATACGCAATGCCCACCACGGCCCACACGAC CGCGCCAAACTCTCTGAAGAACTCAATGACATACGCCCACCCATCAGCGTCCTTCCCCCAGAAATCCTATCCCAC ATCTTTCAATACGTTTTTCATCTCCCTCGCAAACCGTTGTTTCGAATCGTCAGTCTCGTATCAAGACATTGGCGA AGAGTGCTTGTGAACACTCCAGAACTTTGGGCTATCATCGATCTGGATGTCAGTTCACCCCGTGGCAAATCGATA CTTCCAACTTTCATTGCCAATTCTGGCGATTGTGCTTTATCTGTGACTTTTAGATTTCGTGGGCGCATTAATCGG GAGGAACAAACCCTGGTTGATCCAAGTGTGGATTCACGCATCATAGAGAATTTTGGGAGGATTCAAAGTCTGAGC CTGACGAATCCACCTATATCTTGGTTCGATGGACTTCCTCAACTGCAACGTTTACAACACTTGACACTTCAAAAT CATGAAGGACCAAGAGTACCCACGAGTATCCCTGTCGATCGCATGCCCTCCGTATCCGAACTGACGCTCATCAAT CTAAAGAGCGTTCAATTGGACACGAGATGTTTAAACATCACTTCCCTGACGTTAACTCAAATACGTATCACCACC ACCGTACGAATCTTCACCCAATGTCCTTTTCTCAAATACCTTCATTTGGAATATTTGGACCGTGTACAAGATCCT GCGAATCGATTTGCGGGTGCAGATGGTCAAGACAACAATTTTCCTAATAAAACCATCTTGTTGCCGAATCTTGAA ACACTCGTATGGTTTGTCGGTAAACCACAGGATATTTTTGTTTTATCGTGGCAGATGGCGATAATCACACATTTG ACTGTTCCGTCGCTAAAGTCGTTGAAATGGGATCAGAAGGTGGATTTTTCGGGACATTTACGTTCTATTGTTGGG TTTTTTGGTCGTGTGGCTTTGACATTGACGGATCTGGAGTTTTCGAGAGTGGGACAGACTGGGACGGTTATTAGT GGGGAGGTGTTTGTGGATGATTGTGCGGTTGAGAGGATGGTGTTTTCGGATTGTGGATCTGATTTTGTGGATGGG ATACTTCAAGATGTTAAATCGCCGACTCGATTTCCGGGGTTGAAGAAGGTTGAAATGAGGAAAAATGGTAGATTG GTAGAAAGGGCGGTCGTGCAGAGATATGTGAGATTGTTGAAGCAACGAAAAGGATTGGTATTCAATAATGTTATC ATTGTCAAGGTGCTCGATCCACAAACAACTTCAATGGCCGAACCTAGTCCACCGCCAATTCAACAACCACAGCCG AGTCTACCGCAGCCTGCGTTCGTGCCTGGTGGCCAGATGGTGCCGGGTCAGCCACCACCGGCAATTCCTGGACAA GGACCTATGGATACTACTCCGACTGCTCCAGCTGTAGACGGACAAACGCCTGTTGTCGTTGCTGTAGAAGAGAAT CCATGCGAAACACTGTACATCCAGAATTTAAATGAAAAAGTGAAACCACAAGTGTTGCAAGCGACGTTGAGAGGA TTGTTCAAGTCGTATGGCGATGTGTTGGATGTGGTAGCGCATGGGAATATGAGGATGAGGGGACAGGCTTTTGTG TCGTTTGATTCGGTGGATAGTGCGAGAAAGGCGATGAAGGATGTTCAACGGTTTCCTTTATATTCGAAACCTATG CAAATTACGTTTGCAAAGACGAGGTCAGATGCTGTGGTGAAGAAATTGGATGCTGAGAGTTATGATCAGCATAAG CAGCGGAGGGATGAGCACAAAAAAGCGACTCGGTATACGAATCCGATAAAATCAAAATTCAGGTTGAAGCGTATG GCTGCTGAAATGGACGGTGGGGCTGCGCTGCCGCAATCGAAGCGACCCGCAGTACAGATGCCAGACGAGTATCTG CCGCCAAACAAGATTTTGTTCTTACAGAATCTGCCAGAGAGCGTCACAAAAGACCAGCTCATGTCGCTGTTCTCA CAGTATCCCAATTTGTACGAGGTGCGTATGATACCGACGAAAAAGGACATTGCGTTCGTCGAGTACGTGGACGAG GGGAGTGCGGGGGTGGCGAAGGATGCGCTGCACAACTACAAGCTGGATGGGGAGAACAAGATTAAGATTACGTTT GCTCGCAAGTAG |
| Gene | >Agabi119p4|554800 ATGACTCCTTTCAAACAACAAAAAATCACAGAACTCCTCACCAAGATACGCAATGCCCACCACGGCCCACACGAC CGCGCCAAACTCTCTGAAGAACTCAATGACATACGCCCACCCATCAGCGTCCTTCCCCCAGAAATCCTATCCCAC ATCTTTCAATACGTTTTTCATCTCCCTCGCAAACCGTTGTTTCGAATCGTCAGTCTCGTATCAAGACATTGGCGA AGAGTGCTTGTGAACACTCCAGAACTTTGGGCTATCATCGATCTGGATGTCAGTTCACCCCGTGGCAAATCGATA CTTCCAACTTTCATTGCCAATTCTGGCGATTGTGCTTTATCTGTGACTTTTAGATTTCGTGGGCGCATTAATCGG GAGGAACAAACCCTGGTTGATCCAAGTGTGGATTCACGCATCATAGAGAATTTTGGGAGGATTCAAAGTCTGAGC CTGACGAATCCACCTATATCTTGGTTCGATGGACTTCCTCAACTGCAACGTTTACAACACTTGACACTTCAAAAT CATGAAGGACCAAGAGTACCCACGAGTATCCCTGTCGATCGCATGCCCTCCGTATCCGAACTGACGCTCATCAAT CTAAAGAGCGTTCAATTGGACACGAGATGTTTAAACATCACTTCCCTGACGTTAACTCAAATACGTATCACCACC ACCGTACGAATCTTCACCCAATGTCCTTTTCTCAAATACCTTCATTTGGAATATTTGGACCGTGTACAAGATCCT GCGAATCGATTTGCGGGTGCAGATGGTCAAGACAACAATTTTCCTAATAAAACCATCTTGTTGCCGAATCTTGAA ACACTCGTATGGTTTGTCGGTAAACCACAGGATATTTTTGTTTTATCGTGGCAGATGGCGATAATCACACATTTG ACTGTTCCGTCGCTAAAGTCGTTGAAATGGGATCAGAAGGTGGATTTTTCGGGACATTTACGTTCTATTGTTGGG TTTTTTGGTCGTGTGGCTTTGACATTGACGGATCTGGAGTTTTCGAGAGTGGGACAGACTGGGACGGTTATTAGT GGGGAGGTGTTTGTGGATGATTGTGCGGTTGAGAGGATGGTGTTTTCGGATTGTGGATCTGATTTTGTGGATGGG ATACTTCAAGATGTTAAATCGCCGACTCGATTTCCGGGGTTGAAGAAGGTTGAAATGAGGAAAAATGGTAGATTG GTAGAAAGGGCGGTCGTGCAGAGATATGTGAGATTGTTGAAGCAACGAAAAGGATTGGTATTCAATAATGTGTCT GTGTTGTAAATAGACGGCTTTGTAAAATAATGACAAATATACATCAGTATCATTGTCAAGGTGCTCGATCCACAA ACAACTTCAATGGCCGAACCTAGTCCACCGCCAATTCAACAACCACAGCCGAGTCTACCGCAGCCTGCGTTCGTG CCTGGTGGCCAGATGGTGCCGGGTCAGCCACCACCGGCAATTCCTGGACAAGGACCTATGGATACTACTCCGACT GCTCCAGCTGTAGACGGACAAACGCCTGTTGTCGTTGCTGTAGAAGAGAATCCATGCGAAACACTGTACATCCAG AATTTAAATGAAAAAGTGAAACCACAAGGTACGCGTTATCTATTGATGCACTGGATTAGGATGTTGATTGGGTTA CAGTGTTGCAAGCGACGTTGAGAGGATTGTTCAAGTCGTATGGCGATGTGTTGGATGTGGTAGCGCATGGGAATA TGAGGATGAGGGGACAGGCTTTTGTGTCGTTTGATTCGGTGGATAGTGCGAGAAAGGCGATGAAGGATGTTCAAC GGTTTCCTTTATATTCGAAACCTATGGTGCGTTTCTCTATCATATCTACTATGATTACTTTGATTGACTACTTGA ATAGCAAATTACGTTTGCAAAGACGAGGTCAGATGCTGTGGTGAAGAAATTGGATGCTGAGAGTTATGATCAGCA TAAGCAGCGGAGGGATGAGCACAAAAGTATGATTTTTTATTTTTTATTTTTGACGAGGTAGTTGTTGATATGTTG GATAGAAGCGACTCGGTATACGAATCCGATAAAATCAAAATTCAGGTTGAAGCGTATGGCTGCTGAAAGTATGTC TTTTTTTCCGCGTGACTCGCTGTACACGTATTAATCGCTAGCAGTGGACGGTGGGGCTGCGCTGCCGCAATCGAA GCGACCCGCAGTACAGATGCCAGACGAGTATCTGCCGCCAAACAAGATTTTGTTCTTACAGAATCTGCCAGAGAG CGTCACAAAAGACCAGCTCATGTCGCTGTTCTCACAGTATCCCAATTTGTACGAGGTGCGTATGATACCGACGAA AAAGGACATTGCGTTCGTCGAGTACGTGGACGAGGGGAGTGCGGGGGTGGCGAAGGATGCGCTGCACAACTACAA GCTGGATGGGGAGAACAAGATTAAGATTACGTTTGCTCGCAAGTAG |