Protein ID | Agabi119p4|553550 |
Gene name | |
Location | scaffold_01a:48356..50996 |
Strand | + |
Gene length (bp) | 2640 |
Transcript length (bp) | 2085 |
Coding sequence length (bp) | 2085 |
Protein length (aa) | 695 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00240 | ubiquitin | Ubiquitin family | 1.4E-18 | 325 | 393 |
PF00627 | UBA | UBA/TS-N domain | 7.2E-10 | 655 | 688 |
PF11976 | Rad60-SLD | Ubiquitin-2 like Rad60 SUMO-like | 2.4E-08 | 323 | 392 |
PF10302 | Dsc3_N | DSC E3 ubiquitin ligase complex subunit 3, ubiquitin-like domain | 4.7E-06 | 332 | 404 |
PF00651 | BTB | BTB/POZ domain | 2.2E-04 | 31 | 138 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P48510|DSK2_YEAST | Ubiquitin domain-containing protein DSK2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DSK2 PE=1 SV=2 | 323 | 691 | 1.0E-36 |
sp|Q10169|DSK2_SCHPO | Deubiquitination-protection protein dph1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph1 PE=3 SV=1 | 321 | 536 | 8.0E-33 |
sp|Q9NIF3|UBQL_DICDI | Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1 | 323 | 521 | 1.0E-20 |
sp|Q9SII9|DSK2A_ARATH | Ubiquitin domain-containing protein DSK2a OS=Arabidopsis thaliana GN=DSK2A PE=1 SV=2 | 323 | 519 | 1.0E-19 |
sp|Q9SII8|DSK2B_ARATH | Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana GN=DSK2B PE=1 SV=1 | 323 | 519 | 8.0E-16 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P48510|DSK2_YEAST | Ubiquitin domain-containing protein DSK2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DSK2 PE=1 SV=2 | 323 | 691 | 1.0E-36 |
sp|Q10169|DSK2_SCHPO | Deubiquitination-protection protein dph1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph1 PE=3 SV=1 | 321 | 536 | 8.0E-33 |
sp|Q9NIF3|UBQL_DICDI | Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1 | 323 | 521 | 1.0E-20 |
sp|Q9SII9|DSK2A_ARATH | Ubiquitin domain-containing protein DSK2a OS=Arabidopsis thaliana GN=DSK2A PE=1 SV=2 | 323 | 519 | 1.0E-19 |
sp|Q9SII8|DSK2B_ARATH | Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana GN=DSK2B PE=1 SV=1 | 323 | 519 | 8.0E-16 |
sp|Q9JJP9|UBQL1_RAT | Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1 | 451 | 689 | 1.0E-10 |
sp|Q9QZM0|UBQL2_MOUSE | Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=2 | 453 | 689 | 5.0E-10 |
sp|Q9SII9|DSK2A_ARATH | Ubiquitin domain-containing protein DSK2a OS=Arabidopsis thaliana GN=DSK2A PE=1 SV=2 | 647 | 693 | 2.0E-09 |
sp|Q9UMX0|UBQL1_HUMAN | Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2 | 451 | 689 | 3.0E-09 |
sp|Q9SII8|DSK2B_ARATH | Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana GN=DSK2B PE=1 SV=1 | 647 | 689 | 6.0E-09 |
sp|Q8R317|UBQL1_MOUSE | Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1 | 451 | 689 | 1.0E-08 |
sp|Q9H347|UBQL3_HUMAN | Ubiquilin-3 OS=Homo sapiens GN=UBQLN3 PE=1 SV=2 | 308 | 527 | 2.0E-08 |
sp|Q99NB8|UBQL4_MOUSE | Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1 | 322 | 527 | 2.0E-08 |
sp|Q8R317|UBQL1_MOUSE | Ubiquilin-1 OS=Mus musculus GN=Ubqln1 PE=1 SV=1 | 323 | 527 | 4.0E-08 |
sp|Q5R684|UBQL1_PONAB | Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1 | 451 | 689 | 4.0E-08 |
sp|A7X5R6|BAG6_ORNAN | Large proline-rich protein BAG6 OS=Ornithorhynchus anatinus GN=BAG6 PE=3 SV=1 | 321 | 408 | 4.0E-08 |
sp|Q9UHD9|UBQL2_HUMAN | Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2 | 323 | 527 | 8.0E-08 |
sp|Q8C5U9|UBQL3_MOUSE | Ubiquilin-3 OS=Mus musculus GN=Ubqln3 PE=1 SV=1 | 306 | 527 | 1.0E-07 |
sp|Q9NRR5|UBQL4_HUMAN | Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2 | 451 | 689 | 2.0E-07 |
sp|Q9UMX0|UBQL1_HUMAN | Ubiquilin-1 OS=Homo sapiens GN=UBQLN1 PE=1 SV=2 | 323 | 527 | 3.0E-07 |
sp|Q5R684|UBQL1_PONAB | Ubiquilin-1 OS=Pongo abelii GN=UBQLN1 PE=2 SV=1 | 323 | 527 | 3.0E-07 |
sp|Q9NIF3|UBQL_DICDI | Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1 | 641 | 689 | 5.0E-07 |
sp|Q9JJP9|UBQL1_RAT | Ubiquilin-1 OS=Rattus norvegicus GN=Ubqln1 PE=1 SV=1 | 323 | 527 | 6.0E-07 |
sp|Q9QZM0|UBQL2_MOUSE | Ubiquilin-2 OS=Mus musculus GN=Ubqln2 PE=1 SV=2 | 323 | 402 | 7.0E-07 |
sp|Q99NB8|UBQL4_MOUSE | Ubiquilin-4 OS=Mus musculus GN=Ubqln4 PE=1 SV=1 | 451 | 689 | 1.0E-06 |
sp|Q05120|UBIL_NPVOP | Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1 | 323 | 392 | 2.0E-06 |
sp|Q9UHD9|UBQL2_HUMAN | Ubiquilin-2 OS=Homo sapiens GN=UBQLN2 PE=1 SV=2 | 632 | 689 | 4.0E-06 |
sp|P16709|UBIL_NPVAC | Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2 | 323 | 392 | 4.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005515 | protein binding | Yes |
GO:0003674 | molecular_function | No |
GO:0005488 | binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 20 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Agabi119p4|553550 MPELDLILTHSLKIMDSYTRHPKFYFNDGSIILDVERTHFRVHQSLLNRQSELFESMFSLKQPENATRVDGCLLV ELAGDSVSDMEEFLCTVYDPFYFDRLECTSDVDTLIKFISGILRISAKYDMTMIKRKCVSVLLEKFPITLAGCDR IMKSEYRYKTNAIVDAINLAHTANVPEILPWAYYISTHVSVKDLLHDPNLSWKDKALCLAGKERLWHAQKTRTHA FLFDELQSEECSVGCDGRPSVMAWSDKGFSEKTQRGEGVVMGNITRVVRAWDMERFEERLVLPGSDTVPLRFFKP STRGSSYHALPSPAIIQMPESEIQINIKGPNELKLQISIATDKTVSELKQAVAAQSDVEADRQRLIYSGRVLKDD DQLSVYKIQSGHTVHMVKGQARQQASAPSSSAAPQIPTMQTGQNIHDPLTQLNSHLGFGAMAGINPFADLGVNPN DPNMMTSLFNDPRVLEQMASAMSNPAVVDQVIAMNPQLAGMAPQMRQVFQSEEFRRMMSNPEQLQGFMRMASVMR QMQGGSGNSPFGDALAPPTPGFPAPGVPGQNPANPSSTMPSFNNPNPSTTTAPLPGAANPTSPGSGAAGATPNPM NPFGLDPALMQQMLFGGGFGAGAGGAGSGGAGLGGFGAPPPPADARPPEERFQVQLQQLQDMGFTNASQNVRALM ATGGNVHSAIEYILSGGGL* |
Coding | >Agabi119p4|553550 ATGCCGGAGCTTGACCTCATCCTTACGCATTCTTTGAAGATAATGGACTCTTATACTCGACATCCAAAGTTCTAT TTCAACGATGGCTCGATCATCCTAGATGTAGAGCGAACACATTTTCGGGTCCATCAATCTCTTTTGAATAGACAG TCGGAGTTGTTCGAATCCATGTTTTCACTCAAGCAACCTGAGAATGCTACCCGAGTAGATGGATGTTTGCTCGTA GAACTAGCCGGAGACTCAGTTTCTGATATGGAAGAATTTCTTTGTACTGTATATGATCCATTCTACTTCGACCGA CTAGAATGTACCAGCGATGTTGATACCCTTATCAAATTTATCTCTGGCATCCTTCGCATCAGCGCAAAGTATGAC ATGACGATGATCAAACGAAAATGCGTTAGCGTTCTCCTCGAGAAATTTCCAATCACCCTCGCTGGTTGTGATAGG ATCATGAAGTCCGAGTATCGATATAAAACGAACGCTATCGTTGACGCAATCAATTTGGCTCATACAGCCAATGTA CCAGAAATCTTACCATGGGCGTATTATATTTCAACACACGTCTCGGTGAAAGACTTACTGCACGACCCGAATTTG TCTTGGAAAGACAAAGCATTATGTCTGGCAGGAAAGGAGCGTCTATGGCACGCCCAAAAAACTCGAACTCATGCA TTTCTTTTCGATGAATTACAATCGGAGGAGTGTAGTGTGGGATGTGATGGAAGGCCTTCGGTGATGGCATGGAGT GATAAGGGATTTTCAGAGAAGACACAAAGAGGCGAGGGTGTGGTTATGGGAAACATTACCAGAGTTGTTCGAGCT TGGGACATGGAACGGTTTGAGGAGCGACTTGTTCTGCCTGGTTCTGATACTGTACCTCTTAGATTCTTCAAGCCA AGCACCCGCGGCAGTTCGTACCACGCACTTCCTTCTCCCGCCATAATCCAGATGCCCGAATCAGAAATTCAAATC AACATAAAGGGCCCGAATGAGCTCAAGCTCCAGATTTCTATCGCGACAGACAAAACTGTCAGTGAATTGAAGCAG GCCGTCGCTGCGCAGTCTGACGTAGAGGCTGACCGTCAGCGCTTGATTTACTCTGGTCGTGTGCTCAAGGACGAT GATCAATTGTCGGTGTACAAGATTCAATCCGGGCACACCGTTCATATGGTCAAAGGCCAGGCTAGACAGCAAGCT TCCGCGCCCTCTTCATCCGCCGCTCCTCAGATACCTACTATGCAGACGGGACAGAATATTCACGATCCTCTCACC CAACTAAATAGCCATCTCGGTTTCGGAGCGATGGCTGGTATCAACCCTTTTGCCGATCTCGGTGTCAATCCTAAT GATCCCAATATGATGACTTCTTTGTTCAACGATCCACGAGTACTTGAACAAATGGCCTCTGCGATGTCCAATCCA GCAGTAGTTGATCAAGTTATCGCCATGAATCCTCAGCTCGCCGGGATGGCGCCTCAAATGCGACAAGTATTTCAA AGTGAAGAATTTCGACGAATGATGTCCAACCCAGAACAGTTACAGGGTTTCATGCGGATGGCGTCAGTGATGCGT CAGATGCAGGGTGGTTCCGGTAACAGTCCGTTTGGGGACGCGCTTGCTCCTCCTACACCTGGTTTTCCCGCTCCT GGCGTTCCAGGTCAAAATCCTGCCAACCCATCGTCGACAATGCCCTCATTCAATAATCCCAACCCTTCAACAACA ACAGCTCCATTACCCGGTGCAGCGAATCCTACTTCACCTGGCTCAGGCGCTGCGGGTGCAACGCCTAACCCTATG AATCCTTTTGGCTTAGATCCTGCATTGATGCAGCAAATGCTTTTCGGTGGGGGCTTCGGTGCAGGTGCGGGAGGT GCAGGATCAGGTGGTGCCGGGCTGGGTGGTTTCGGTGCCCCGCCTCCCCCTGCGGATGCACGGCCACCTGAAGAA CGATTTCAAGTTCAACTCCAGCAATTGCAGGATATGGGTTTCACTAATGCTTCACAAAATGTTCGAGCTTTAATG GCGACGGGAGGAAATGTACATTCCGCTATTGAGTATATTTTAAGTGGTGGCGGTCTGTAA |
Transcript | >Agabi119p4|553550 ATGCCGGAGCTTGACCTCATCCTTACGCATTCTTTGAAGATAATGGACTCTTATACTCGACATCCAAAGTTCTAT TTCAACGATGGCTCGATCATCCTAGATGTAGAGCGAACACATTTTCGGGTCCATCAATCTCTTTTGAATAGACAG TCGGAGTTGTTCGAATCCATGTTTTCACTCAAGCAACCTGAGAATGCTACCCGAGTAGATGGATGTTTGCTCGTA GAACTAGCCGGAGACTCAGTTTCTGATATGGAAGAATTTCTTTGTACTGTATATGATCCATTCTACTTCGACCGA CTAGAATGTACCAGCGATGTTGATACCCTTATCAAATTTATCTCTGGCATCCTTCGCATCAGCGCAAAGTATGAC ATGACGATGATCAAACGAAAATGCGTTAGCGTTCTCCTCGAGAAATTTCCAATCACCCTCGCTGGTTGTGATAGG ATCATGAAGTCCGAGTATCGATATAAAACGAACGCTATCGTTGACGCAATCAATTTGGCTCATACAGCCAATGTA CCAGAAATCTTACCATGGGCGTATTATATTTCAACACACGTCTCGGTGAAAGACTTACTGCACGACCCGAATTTG TCTTGGAAAGACAAAGCATTATGTCTGGCAGGAAAGGAGCGTCTATGGCACGCCCAAAAAACTCGAACTCATGCA TTTCTTTTCGATGAATTACAATCGGAGGAGTGTAGTGTGGGATGTGATGGAAGGCCTTCGGTGATGGCATGGAGT GATAAGGGATTTTCAGAGAAGACACAAAGAGGCGAGGGTGTGGTTATGGGAAACATTACCAGAGTTGTTCGAGCT TGGGACATGGAACGGTTTGAGGAGCGACTTGTTCTGCCTGGTTCTGATACTGTACCTCTTAGATTCTTCAAGCCA AGCACCCGCGGCAGTTCGTACCACGCACTTCCTTCTCCCGCCATAATCCAGATGCCCGAATCAGAAATTCAAATC AACATAAAGGGCCCGAATGAGCTCAAGCTCCAGATTTCTATCGCGACAGACAAAACTGTCAGTGAATTGAAGCAG GCCGTCGCTGCGCAGTCTGACGTAGAGGCTGACCGTCAGCGCTTGATTTACTCTGGTCGTGTGCTCAAGGACGAT GATCAATTGTCGGTGTACAAGATTCAATCCGGGCACACCGTTCATATGGTCAAAGGCCAGGCTAGACAGCAAGCT TCCGCGCCCTCTTCATCCGCCGCTCCTCAGATACCTACTATGCAGACGGGACAGAATATTCACGATCCTCTCACC CAACTAAATAGCCATCTCGGTTTCGGAGCGATGGCTGGTATCAACCCTTTTGCCGATCTCGGTGTCAATCCTAAT GATCCCAATATGATGACTTCTTTGTTCAACGATCCACGAGTACTTGAACAAATGGCCTCTGCGATGTCCAATCCA GCAGTAGTTGATCAAGTTATCGCCATGAATCCTCAGCTCGCCGGGATGGCGCCTCAAATGCGACAAGTATTTCAA AGTGAAGAATTTCGACGAATGATGTCCAACCCAGAACAGTTACAGGGTTTCATGCGGATGGCGTCAGTGATGCGT CAGATGCAGGGTGGTTCCGGTAACAGTCCGTTTGGGGACGCGCTTGCTCCTCCTACACCTGGTTTTCCCGCTCCT GGCGTTCCAGGTCAAAATCCTGCCAACCCATCGTCGACAATGCCCTCATTCAATAATCCCAACCCTTCAACAACA ACAGCTCCATTACCCGGTGCAGCGAATCCTACTTCACCTGGCTCAGGCGCTGCGGGTGCAACGCCTAACCCTATG AATCCTTTTGGCTTAGATCCTGCATTGATGCAGCAAATGCTTTTCGGTGGGGGCTTCGGTGCAGGTGCGGGAGGT GCAGGATCAGGTGGTGCCGGGCTGGGTGGTTTCGGTGCCCCGCCTCCCCCTGCGGATGCACGGCCACCTGAAGAA CGATTTCAAGTTCAACTCCAGCAATTGCAGGATATGGGTTTCACTAATGCTTCACAAAATGTTCGAGCTTTAATG GCGACGGGAGGAAATGTACATTCCGCTATTGAGTATATTTTAAGTGGTGGCGGTCTGTAA |
Gene | >Agabi119p4|553550 ATGCCGGAGCTTGACCTCATCCTTACGCATTCTTTGAAGATAATGGACTCTTATACTCGACATCCAAAGTTCTAT TTCAACGATGGCTCGATCATCCTAGATGTAGAGCGAACACATTTTCGGGTCCATCAATCTCTTTTGAATAGACAG TCGGAGTTGTTCGAATCCATGTTTTCACTCAAGCAACCTGAGAATGCTACCCGAGTAGATGGATGTTTGCTCGTA GAACTAGCCGGAGACTCAGTTTCTGATATGGAAGAATTTCTTTGTACTGTATATGATCCATTGTGCGCTATACGT CATCTCTTCCTATTTCTTCTAATCAAACAATCGCATAGCTACTTCGACCGACTAGAATGTACCAGCGATGTTGAT ACCCTTATCAAATTTATCTCTGGCATCCTTCGCATCAGCGCAAAGTATGACATGACGATGATCAAACGAAAATGC GTTAGCGTTCTCCTCGAGAAATTTCCAATCACCCTCGCTGGTTGTGATAGGATCATGAAGTCCGAGTATCGATAT AAAACGAACGCTATCGTTGACGCAATCAATTTGGCTCATACAGCCAATGTACCAGAAATCTTACCATGGGCGTAT TATATTTCAACACACGTCTCGGTGAAAGACTTACTGCACGACCCGAATTTGTCTTGGAAAGACAAAGCATTATGT CTGGCAGGAAAGGAGCGTCTATGGCACGCCCAAAAAACTCGAACTCATGCATTTCTTTTCGATGAATTACAATCG GAGGAGTGTAGTGTGGGATGTGATGGAAGGCCTTCGGTGATGGCATGGAGTGATAGTGAGCGATTAAGGATGAAT CCACATCCGTTGGAGGAGTATAAGAAGTGGTCAGACCTTAATATTTGTATGAACTGTCAGAGGGATTTTCAGAGA AGACACAAAGAGGCGAGGGTGTGGTTATGGGAAACATTACCAGAGTTGTTCGAGCTTGGGACATGGAACGGTTTG AGGAGCGACTTGTAGGATCATGTTCTGAGATTAATTTTTCATATTTATCAGTACATGCAGGTTCTGCCTGGTTCT GATACTGTACCTCTTAGATTCTTCAAGCCAAGGTAATCTGATCCATGGGAAGATGTGATAAGATCACGTGTGATA TGACATAGCACCCGCGGCAGTTCGTACCACGCACTTCCTTCTCCCGCCATAATCCAGATGCCCGAATCAGAAATT CAAATCAACATAAAGGGTACATTTCAACTATATATCCTGCTCTAAATTGACCGAAATCATAGGCCCGAATGAGCT CAAGCTCCAGATTTCTATCGCGACAGACAAAACTGTCAGTGAATTGAAGCAGGCCGTCGCTGCGCAGTCTGACGT AGAGGCTGACCGTCAGCGCTTGATTTACTCTGGTGCGTTAATGAGAGCTCATAAGTTCCTATACATTTAATCAAT CTTAACAGGTCGTGTGCTCAAGGTGAGCTCCTTTTTTGATCTTGAAGTCAAACCTCTCCCAACACTCGACTCAGG ACGATGATCAATTGTCGGTGTACAAGATTCAATCCGGGCACACCGTTCATATGGTCAAAGGCCAGGCTAGACAGC AAGCTTCCGCGCCCTCTTCATCCGCCGCTCCTCAGATACCTACTATGCAGACGGGACAGAATATTCACGATCCTC TCACCCAACTAAATAGCCATCTCGGTTTCGGAGCGATGGCTGGTATCAACCCTTTTGCCGATCTCGGTGTCAATC CTAATGATCCCAATATGGTGAGTGGTCTGCCCCTGGTAAGCTGTATGGTTTTTTCTCAAAATCTTTTAGATGACT TCTTTGTTCAACGATCCACGAGTACTTGAACAAATGGCCTCTGCGATGTCCAATCCAGCAGTAGTTGATCAAGTT ATCGCCATGAATCCTCAGCTCGCCGGGATGGCGCCTCAAATGCGACAAGTATTTCAAAGTGAAGAATTTCGACGA ATGATGTACGTCTACCTCGCCAGATGCTTCGATAGCACTAAATCCGCTAAAATTGTATTGATCGCCAGGTCCAAC CCAGAACAGTTACAGGGTTTCATGCGGATGGCGTCAGTGATGCGTCAGATGCAGGGTGGTTCCGGTAACAGTCCG TTTGGGGACGCGCTTGCTCCTCCTACACCTGGTTTTCCCGCTCCTGGCGTTCCAGGTCAAAATCCTGCCAACCCA TCGTCGACAATGCCCTCATTCAATAATCCCAACCCTTCAACAACAACAGCTCCATTACCCGGTGCAGCGAATCCT ACTTCACCTGGCTCAGGCGCTGCGGGTGCAACGCCTAACCCTATGAATCCTTTTGGCTTAGATCCTGCATTGATG CAGCAAATGCTTTTCGGTGGGGGCTTCGGTGCAGGTGCGGGAGGTGCAGGATCAGGTGGTGCCGGGCTGGGTGGT TTCGGTGCCCCGCCTCCCCCTGCGGATGCACGGCCACCTGAAGAACGATTTCAAGTTCAACTCCAGGTCCGTCAT CTTCATACATTGACCTAAGGAGAATCTTACGAGCATGGTTCTTTTTCCTAGCAATTGCAGGATATGGGTTTCACT AATGCTTCACAAAATGTTCGAGCTTTAATGGCGACGGGAGGAAATGTACATTCCGCTATTGAGTATATTTTAAGT GGTGGCGGTCTGTAA |