Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|113360
Gene name
Locationscaffold_08:1803449..1804048
Strand+
Gene length (bp)599
Transcript length (bp)483
Coding sequence length (bp)483
Protein length (aa) 161

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00652 Ricin_B_lectin Ricin-type beta-trefoil lectin domain 2.2E-12 27 153

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|113360
MLSSKFFSLLTFAAAAVARIPTGQFFITNIETEKVLEAGNGSSGPDAFIVVAKRNRRNNAQIWSHTKGSGFLRNK
ASQLVLEVPRTNGAVEYGTKLQARDEATDDLTQLWDYDEDAQHLFTLANTNACLTAEGSAQYAIVDFCDTQDNDS
QRWELVSVRD*
Coding >Agabi119p4|113360
ATGCTCTCCTCCAAATTCTTCTCCCTTCTTACTTTTGCTGCCGCTGCTGTTGCTCGAATCCCAACTGGCCAGTTC
TTTATCACTAACATCGAGACTGAAAAGGTCTTGGAAGCCGGTAATGGGAGCTCAGGTCCTGATGCATTCATTGTC
GTTGCGAAACGCAACAGACGCAACAACGCCCAAATCTGGTCACACACCAAGGGCAGTGGATTCTTAAGAAACAAA
GCCTCCCAACTTGTTCTTGAAGTACCCAGGACGAATGGTGCTGTCGAATACGGAACGAAGTTACAGGCTAGGGAT
GAAGCTACTGACGATTTGACTCAGTTGTGGGACTATGATGAAGACGCACAACATTTGTTCACACTGGCCAATACT
AATGCATGCCTTACTGCGGAGGGCTCAGCGCAGTATGCTATAGTTGACTTTTGTGACACTCAAGATAACGATTCT
CAACGGTGGGAATTAGTCAGTGTCAGAGATTAG
Transcript >Agabi119p4|113360
ATGCTCTCCTCCAAATTCTTCTCCCTTCTTACTTTTGCTGCCGCTGCTGTTGCTCGAATCCCAACTGGCCAGTTC
TTTATCACTAACATCGAGACTGAAAAGGTCTTGGAAGCCGGTAATGGGAGCTCAGGTCCTGATGCATTCATTGTC
GTTGCGAAACGCAACAGACGCAACAACGCCCAAATCTGGTCACACACCAAGGGCAGTGGATTCTTAAGAAACAAA
GCCTCCCAACTTGTTCTTGAAGTACCCAGGACGAATGGTGCTGTCGAATACGGAACGAAGTTACAGGCTAGGGAT
GAAGCTACTGACGATTTGACTCAGTTGTGGGACTATGATGAAGACGCACAACATTTGTTCACACTGGCCAATACT
AATGCATGCCTTACTGCGGAGGGCTCAGCGCAGTATGCTATAGTTGACTTTTGTGACACTCAAGATAACGATTCT
CAACGGTGGGAATTAGTCAGTGTCAGAGATTAG
Gene >Agabi119p4|113360
ATGCTCTCCTCCAAATTCTTCTCCCTTCTTACTTTTGCTGCCGCTGCTGTTGCTCGAATCCCAACTGGCCAGTTC
TTTATCACTAACATCGAGACTGAAAAGGTCTTGGAAGCCGGTAATGGGAGCTCAGGTGTAAATGCCGAATCTGTT
TCAACTTCCTGTTCGATCATTGACCTTCTATTTAGCCTGATGCATTCATTGTCGTTGCGAAACGCAACAGACGCA
ACAACGCCCAAATCTGGTCACACACCAAGGGCAGTGGATTCTTAAGAAACAAAGCCTCCCAACTTGTTCTTGAAG
TACCCAGTGAGTTTGAAGTTGTGTAACAAATCGTCTGTATAGGTGAATTTAATGTTTTTGTTTGCATAGGGACGA
ATGGTGCTGTCGAATACGGAACGAAGTTACAGGCTAGGGATGAAGCTACTGACGATTTGACTCAGTTGTGGGACT
ATGATGAAGACGCACAACATTTGTTCACACTGGCCAATACTAATGCATGCCTTACTGCGGAGGGCTCAGCGCAGT
ATGCTATAGTTGACTTTTGTGACACTCAAGATAACGATTCTCAACGGTGGGAATTAGTCAGTGTCAGAGATTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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