© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|112020 |
| Gene name | |
| Location | scaffold_08:1449519..1450627 |
| Strand | - |
| Gene length (bp) | 1108 |
| Transcript length (bp) | 810 |
| Coding sequence length (bp) | 810 |
| Protein length (aa) | 270 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14622 | Ribonucleas_3_3 | Ribonuclease-III-like | 1.0E-14 | 99 | 241 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004525 | ribonuclease III activity | Yes |
| GO:0006396 | RNA processing | Yes |
| GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | No |
| GO:0004519 | endonuclease activity | No |
| GO:0004521 | endoribonuclease activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008152 | metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0032296 | double-stranded RNA-specific ribonuclease activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0004540 | ribonuclease activity | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0140640 | catalytic activity, acting on a nucleic acid | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0004518 | nuclease activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0140098 | catalytic activity, acting on RNA | No |
| GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|112020 MSRSLSVLRSSLSPLVASSSRCPQGTRGYAQAVLKRKSIFDNPHHTPSNHSSSSRKDSPWGNREKFGQDAQPTPL WQLKPDPQFSEHLNAVFNPLEFNPEAARRCLTHASHPTAVNGHNQGMSFLGRRVLETYLHLYLSSSKHLKPTHDF NQITNWTIGTYTLGQHVGSKWGLGRVMRWVPTLSKDRLRSVEGKGEISQLSRVVGLYKVQGDAVAAVMGTIFQQF GGSVALRAFHTRVLPNLLLDGKNGGLPLNELEVVISVKKILLTA* |
| Coding | >Agabi119p4|112020 ATGTCTCGCTCGCTGTCGGTTCTGCGCTCATCACTCTCACCGCTCGTCGCATCCTCTTCGCGCTGTCCTCAAGGC ACGCGAGGTTACGCGCAGGCTGTTCTCAAAAGGAAAAGCATCTTCGACAATCCCCACCATACCCCCAGTAATCAC AGTAGCTCCAGTAGAAAAGACTCTCCATGGGGGAATCGAGAAAAATTTGGCCAGGATGCCCAACCAACGCCCCTT TGGCAACTTAAACCTGACCCTCAATTTTCTGAACACCTCAACGCCGTTTTCAACCCCCTAGAATTCAACCCGGAA GCCGCGCGACGCTGTCTCACTCATGCCAGCCACCCTACTGCAGTCAATGGTCACAACCAAGGAATGTCTTTCCTC GGTCGCCGTGTTCTAGAGACATATCTTCACCTCTATCTCAGTTCGAGTAAACACCTTAAACCGACGCATGACTTC AACCAAATCACGAACTGGACAATAGGCACTTACACCCTTGGTCAGCATGTTGGTTCGAAGTGGGGTCTCGGACGT GTAATGAGATGGGTCCCAACTTTGAGCAAAGATAGGCTAAGAAGTGTTGAGGGTAAAGGCGAAATATCACAACTA TCACGAGTCGTGGGTCTTTACAAGGTCCAGGGAGATGCGGTCGCTGCTGTGATGGGGACCATATTCCAACAATTC GGTGGCTCAGTAGCTCTTCGAGCTTTCCATACTAGAGTATTACCCAACCTATTGTTAGACGGTAAAAATGGTGGT CTACCATTGAACGAGCTTGAGGTGGTCATATCCGTTAAGAAAATATTGCTTACCGCTTAA |
| Transcript | >Agabi119p4|112020 ATGTCTCGCTCGCTGTCGGTTCTGCGCTCATCACTCTCACCGCTCGTCGCATCCTCTTCGCGCTGTCCTCAAGGC ACGCGAGGTTACGCGCAGGCTGTTCTCAAAAGGAAAAGCATCTTCGACAATCCCCACCATACCCCCAGTAATCAC AGTAGCTCCAGTAGAAAAGACTCTCCATGGGGGAATCGAGAAAAATTTGGCCAGGATGCCCAACCAACGCCCCTT TGGCAACTTAAACCTGACCCTCAATTTTCTGAACACCTCAACGCCGTTTTCAACCCCCTAGAATTCAACCCGGAA GCCGCGCGACGCTGTCTCACTCATGCCAGCCACCCTACTGCAGTCAATGGTCACAACCAAGGAATGTCTTTCCTC GGTCGCCGTGTTCTAGAGACATATCTTCACCTCTATCTCAGTTCGAGTAAACACCTTAAACCGACGCATGACTTC AACCAAATCACGAACTGGACAATAGGCACTTACACCCTTGGTCAGCATGTTGGTTCGAAGTGGGGTCTCGGACGT GTAATGAGATGGGTCCCAACTTTGAGCAAAGATAGGCTAAGAAGTGTTGAGGGTAAAGGCGAAATATCACAACTA TCACGAGTCGTGGGTCTTTACAAGGTCCAGGGAGATGCGGTCGCTGCTGTGATGGGGACCATATTCCAACAATTC GGTGGCTCAGTAGCTCTTCGAGCTTTCCATACTAGAGTATTACCCAACCTATTGTTAGACGGTAAAAATGGTGGT CTACCATTGAACGAGCTTGAGGTGGTCATATCCGTTAAGAAAATATTGCTTACCGCTTAA |
| Gene | >Agabi119p4|112020 ATGTCTCGCTCGCTGTCGGTTCTGCGCTCATCACTCTCACCGCTCGTCGCATCCTCTTCGCGCTGTCCTCAAGGT ATTTTCTACCTTCATATCTCTCTTATTCGCGTCTAATTCTTATATGTGTACAGGCACGCGAGGTTACGCGCAGGC TGTTCTCAAAAGGAAAAGCATCTTCGACAATCCCCACCATACCCCCAGTAATCACAGTAGCTCCAGTAGAAAAGA CTCTCCATGGGGGAATCGAGAAAAATTTGGCCAGGATGCCCAACCAACGCCCCTTTGGCAACTTAAACCTGACCC TCAATTTTCTGAACACCTCAACGCCGTTTTCAACCCCCTAGAATTCAACCCGGAAGCCGCGCGACGCTGTCTCAC TCATGCCAGCCACCCTACTGCAGTCAATGGTCACAACCAAGGAATGTCTTTCCTCGGTATGTCATTTTACTCTGT AAACCTCCAACCATCCTAACATTTTCTAGGTCGCCGTGTTCTAGAGACATATCTTCACCTCTATCTCAGTTCGAG TAAACACCTTAAACCGACGCATGACTTCAACCAAATCACGAACTGGACAATAGGCACTTACACCCTTGGTCAGCA TGTTGGTTCGAAGTGGGGTCTCGGACGTGTAATGAGATGGGTCCCAACTTTGAGCAAAGATAGGCTAAGAAGTGT TGAGGGTAAAGGCGAAATATCACAACTATCACGAGTCGTGGGTCTTTACAAGGTCCAGGGAGATGCGGTCGCTGC TGTGATGGGGACCATATTCCAACAATTCGTGTGTCTTCTCATATTTCTCAGTTTGTCTATATTACTAAGGCTTCT CGGACAGGGTGGCTCAGTAGCTCTTCGAGCTTTCCATACTAGAGTATTACCCAACCTATTGTTAGACGGTAAAAA TGGTGGTCTACCATTGGTATTTCATTCCGAAGCTCGTGAAATTTGTAACAAAATGGGCGGCTCAGAGAGTGATTT GACGAAGCCTATACAAGAACGAGCTTGAGGTGGTCATATCCGTTAAGAAAATATTGCTTACCGTCAGTTTGTTTG TTTTTTCTTTCGTTTTCTTTTGCTGTTTTGAAGCTAACATGAGGTTGCACAGGCTTAA |