Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|111880
Gene name
Locationscaffold_08:1414487..1415387
Strand-
Gene length (bp)900
Transcript length (bp)705
Coding sequence length (bp)705
Protein length (aa) 235

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06703 SPC25 Microsomal signal peptidase 25 kDa subunit (SPC25) 3.5E-56 48 225

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9VYY2|SPCS2_DROME Signal peptidase complex subunit 2 OS=Drosophila melanogaster GN=Spase25 PE=2 SV=1 32 139 5.0E-09
sp|Q5M8Y1|SPCS2_XENTR Probable signal peptidase complex subunit 2 OS=Xenopus tropicalis GN=spcs2 PE=2 SV=1 39 232 1.0E-08
sp|Q5BJI9|SPCS2_DANRE Probable signal peptidase complex subunit 2 OS=Danio rerio GN=spcs2 PE=2 SV=1 39 223 3.0E-08
sp|Q28250|SPCS2_CANLF Signal peptidase complex subunit 2 OS=Canis lupus familiaris GN=SPCS2 PE=1 SV=1 39 218 1.0E-07
sp|Q4R512|SPCS2_MACFA Signal peptidase complex subunit 2 OS=Macaca fascicularis GN=SPCS2 PE=2 SV=1 39 218 1.0E-07
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Swissprot ID Swissprot Description Start End E-value
sp|Q9VYY2|SPCS2_DROME Signal peptidase complex subunit 2 OS=Drosophila melanogaster GN=Spase25 PE=2 SV=1 32 139 5.0E-09
sp|Q5M8Y1|SPCS2_XENTR Probable signal peptidase complex subunit 2 OS=Xenopus tropicalis GN=spcs2 PE=2 SV=1 39 232 1.0E-08
sp|Q5BJI9|SPCS2_DANRE Probable signal peptidase complex subunit 2 OS=Danio rerio GN=spcs2 PE=2 SV=1 39 223 3.0E-08
sp|Q28250|SPCS2_CANLF Signal peptidase complex subunit 2 OS=Canis lupus familiaris GN=SPCS2 PE=1 SV=1 39 218 1.0E-07
sp|Q4R512|SPCS2_MACFA Signal peptidase complex subunit 2 OS=Macaca fascicularis GN=SPCS2 PE=2 SV=1 39 218 1.0E-07
sp|Q5RAY6|SPCS2_PONAB Signal peptidase complex subunit 2 OS=Pongo abelii GN=SPCS2 PE=2 SV=1 39 218 2.0E-07
sp|Q15005|SPCS2_HUMAN Signal peptidase complex subunit 2 OS=Homo sapiens GN=SPCS2 PE=1 SV=3 39 218 2.0E-07
sp|Q9CYN2|SPCS2_MOUSE Signal peptidase complex subunit 2 OS=Mus musculus GN=Spcs2 PE=1 SV=1 39 218 2.0E-07
sp|Q04969|SPC2_YEAST Signal peptidase complex subunit SPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPC2 PE=1 SV=1 41 234 4.0E-06
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GO

GO Term Description Terminal node
GO:0006465 signal peptide processing Yes
GO:0005787 signal peptidase complex Yes
GO:0016021 integral component of membrane Yes
GO:0071704 organic substance metabolic process No
GO:1901564 organonitrogen compound metabolic process No
GO:0005575 cellular_component No
GO:0016485 protein processing No
GO:0008152 metabolic process No
GO:0140534 endoplasmic reticulum protein-containing complex No
GO:0032991 protein-containing complex No
GO:0006807 nitrogen compound metabolic process No
GO:0044238 primary metabolic process No
GO:0031224 intrinsic component of membrane No
GO:0019538 protein metabolic process No
GO:0098796 membrane protein complex No
GO:0009987 cellular process No
GO:0006508 proteolysis No
GO:1905368 peptidase complex No
GO:0044237 cellular metabolic process No
GO:0051604 protein maturation No
GO:0043170 macromolecule metabolic process No
GO:0006518 peptide metabolic process No
GO:1902494 catalytic complex No
GO:0110165 cellular anatomical entity No
GO:0043603 cellular amide metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 32 0.45

Transmembrane Domains

Domain # Start End Length
1 78 96 18
2 106 128 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|111880
MAKDSKHANHTDQRASSEPPDRPTGPLSIPVSNEARDEVKVNNANVSELKNACDDAVKRYLARPDLFKQIHVHTD
VRLGLGWLSVFVAAGAALYGYKVEFEKSKPVVWFGVIMYVVLTTIQTLYAYFVEGDTVFMGRRKTFSKRIITERI
TLSSKTQSATKPTKNQPTSTPPAYTLSISYFRSTNAGKSLLARGKTKVVRGYPSFFDEQGTMHQEVFEKWVGEAV
ESAMDGKND*
Coding >Agabi119p4|111880
ATGGCCAAAGACAGCAAACACGCAAACCACACGGATCAACGGGCGTCATCCGAACCCCCTGATCGTCCTACCGGC
CCTCTCTCAATCCCCGTCTCAAACGAAGCCCGAGACGAAGTCAAGGTCAACAATGCCAACGTGTCTGAACTCAAG
AACGCTTGCGATGATGCTGTTAAACGTTACCTCGCACGACCAGATTTGTTCAAACAGATTCATGTACATACGGAT
GTACGATTGGGTTTGGGTTGGTTAAGCGTGTTCGTGGCGGCCGGTGCAGCTTTGTATGGATACAAAGTGGAGTTT
GAGAAGTCCAAACCTGTAGTTTGGTTTGGTGTTATCATGTATGTTGTGTTGACGACGATACAAACACTATACGCC
TATTTCGTCGAAGGCGATACGGTCTTTATGGGCCGAAGAAAAACGTTCTCCAAACGCATAATCACAGAGCGTATA
ACTCTATCATCTAAAACTCAATCAGCAACCAAACCAACCAAAAACCAACCAACATCCACGCCACCGGCATATACA
CTTTCCATTTCATATTTTCGCTCAACAAATGCAGGTAAATCCTTACTTGCAAGGGGTAAAACCAAGGTTGTACGC
GGATATCCATCGTTTTTTGACGAACAAGGAACGATGCACCAAGAAGTGTTTGAGAAATGGGTTGGAGAGGCTGTG
GAAAGTGCTATGGATGGGAAGAACGATTGA
Transcript >Agabi119p4|111880
ATGGCCAAAGACAGCAAACACGCAAACCACACGGATCAACGGGCGTCATCCGAACCCCCTGATCGTCCTACCGGC
CCTCTCTCAATCCCCGTCTCAAACGAAGCCCGAGACGAAGTCAAGGTCAACAATGCCAACGTGTCTGAACTCAAG
AACGCTTGCGATGATGCTGTTAAACGTTACCTCGCACGACCAGATTTGTTCAAACAGATTCATGTACATACGGAT
GTACGATTGGGTTTGGGTTGGTTAAGCGTGTTCGTGGCGGCCGGTGCAGCTTTGTATGGATACAAAGTGGAGTTT
GAGAAGTCCAAACCTGTAGTTTGGTTTGGTGTTATCATGTATGTTGTGTTGACGACGATACAAACACTATACGCC
TATTTCGTCGAAGGCGATACGGTCTTTATGGGCCGAAGAAAAACGTTCTCCAAACGCATAATCACAGAGCGTATA
ACTCTATCATCTAAAACTCAATCAGCAACCAAACCAACCAAAAACCAACCAACATCCACGCCACCGGCATATACA
CTTTCCATTTCATATTTTCGCTCAACAAATGCAGGTAAATCCTTACTTGCAAGGGGTAAAACCAAGGTTGTACGC
GGATATCCATCGTTTTTTGACGAACAAGGAACGATGCACCAAGAAGTGTTTGAGAAATGGGTTGGAGAGGCTGTG
GAAAGTGCTATGGATGGGAAGAACGATTGA
Gene >Agabi119p4|111880
ATGGCCAAAGACAGCAAACACGCAAACCACACGGATCAACGGGCGTCATCCGAACCCCCTGATCGTCCTACCGGC
CCTCTCTCAATCCCCGTCTCAAACGAAGCCCGAGACGAAGTCAAGGTCAACAATGCCAACGTGTCTGAACTCAAG
AACGCTTGCGATGATGCTGTTAAACGTGTAAGCCATGTTCAGGTTTTTTTCCTTTTTTTCCCCGCTAACTTGTTC
GATTTATCCAACCGGGGACAGTACCTCGCACGACCAGATTTGTTCAAACAGATTCATGTACATACGGATGTACGA
TTGGGTTTGGGTTGGTTAAGCGTGTTCGTGGCGGCCGGTGCAGCTTTGTATGGATACAAAGTGGAGTTTGAGAAG
TCCAAACCTGTAGTTTGGTTTGGTGTTATCATGTGCGTAAATTTCTTTCTTTGACCTTGCTTCTAGCTCATTGAT
AACCTTTCTTTGTTCGGATAGGTATGTTGTGTTGACGACGATACAAACACTATACGCCTATTTCGTCGAAGGCGA
TACGGTCTTTATGGGCCGAAGAAAAACGTTCTCCAAACGCGTAAGTCTCATCTCAAGTATCTTTGAGGTTCGCTA
ATCATGCAACGATTTCTTGTTTCATAGATAATCACAGAGCGTATAACTCTATCATCTAAAACTCAATCAGCAACC
AAACCAACCAAAAACCAACCAACATCCACGCCACCGGCATATACACTTTCCATTTCATATTTTCGCTCAACAAAT
GCAGGTAAATCCTTACTTGCAAGGGGTAAAACCAAGGTTGTACGCGGATATCCATCGTTTTTTGACGAACAAGGA
ACGATGCACCAAGAAGTGTTTGAGAAATGGGTTGGAGAGGCTGTGGAAAGTGCTATGGATGGGAAGAACGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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