© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|111850 |
| Gene name | |
| Location | scaffold_08:1409713..1410955 |
| Strand | - |
| Gene length (bp) | 1242 |
| Transcript length (bp) | 882 |
| Coding sequence length (bp) | 882 |
| Protein length (aa) | 294 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00240 | ubiquitin | Ubiquitin family | 2.6E-15 | 78 | 142 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P84589|UBIQ_LUMTE | Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2 | 79 | 141 | 1.0E-06 |
| sp|P62975|UBIQ_RABIT | Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1 | 79 | 141 | 2.0E-06 |
| sp|P68197|UBIQ_CERCA | Ubiquitin OS=Ceratitis capitata PE=1 SV=1 | 79 | 141 | 2.0E-06 |
| sp|Q865C5|UBIQ_CAMDR | Ubiquitin OS=Camelus dromedarius PE=3 SV=2 | 79 | 141 | 2.0E-06 |
| sp|A4QND0|UBL4A_XENTR | Ubiquitin-like protein 4A OS=Xenopus tropicalis GN=ubl4a PE=2 SV=1 | 67 | 144 | 2.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P84589|UBIQ_LUMTE | Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2 | 79 | 141 | 1.0E-06 |
| sp|P62975|UBIQ_RABIT | Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1 | 79 | 141 | 2.0E-06 |
| sp|P68197|UBIQ_CERCA | Ubiquitin OS=Ceratitis capitata PE=1 SV=1 | 79 | 141 | 2.0E-06 |
| sp|Q865C5|UBIQ_CAMDR | Ubiquitin OS=Camelus dromedarius PE=3 SV=2 | 79 | 141 | 2.0E-06 |
| sp|A4QND0|UBL4A_XENTR | Ubiquitin-like protein 4A OS=Xenopus tropicalis GN=ubl4a PE=2 SV=1 | 67 | 144 | 2.0E-06 |
| sp|P15357|RS27A_DROME | Ubiquitin-40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=1 SV=2 | 81 | 141 | 2.0E-06 |
| sp|P62979|RS27A_HUMAN | Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=2 | 81 | 141 | 3.0E-06 |
| sp|P68203|RS27A_SPOFR | Ubiquitin-40S ribosomal protein S27a OS=Spodoptera frugiperda PE=2 SV=2 | 81 | 141 | 3.0E-06 |
| sp|P46575|RL40_EIMBO | Ubiquitin-60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=2 | 79 | 141 | 3.0E-06 |
| sp|P62992|RS27A_BOVIN | Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1 SV=2 | 81 | 141 | 3.0E-06 |
| sp|P62978|RS27A_CAVPO | Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=1 SV=2 | 81 | 141 | 3.0E-06 |
| sp|P68200|RS27A_ICTPU | Ubiquitin-40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=2 SV=2 | 81 | 141 | 3.0E-06 |
| sp|P62983|RS27A_MOUSE | Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=1 SV=2 | 81 | 141 | 3.0E-06 |
| sp|P62982|RS27A_RAT | Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=2 | 81 | 141 | 3.0E-06 |
| sp|Q0D261|UBL4A_XENLA | Ubiquitin-like protein 4A OS=Xenopus laevis GN=ubl4a PE=2 SV=1 | 67 | 144 | 3.0E-06 |
| sp|P79781|RS27A_CHICK | Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=2 SV=3 | 81 | 141 | 3.0E-06 |
| sp|P62986|RL40_RAT | Ubiquitin-60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P68202|RS27A_PLUXY | Ubiquitin-40S ribosomal protein S27a OS=Plutella xylostella PE=2 SV=2 | 81 | 141 | 4.0E-06 |
| sp|P18101|RL40_DROME | Ubiquitin-60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=1 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P29504|RS27A_MANSE | Ubiquitin-40S ribosomal protein S27a OS=Manduca sexta PE=2 SV=2 | 81 | 141 | 4.0E-06 |
| sp|P63048|RL40_BOVIN | Ubiquitin-60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=1 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P63050|RL40_CANLF | Ubiquitin-60S ribosomal protein L40 OS=Canis lupus familiaris GN=UBA52 PE=2 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P63052|RL40_FELCA | Ubiquitin-60S ribosomal protein L40 OS=Felis catus GN=UBA52 PE=2 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P62987|RL40_HUMAN | Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P0C273|RL40_MACFA | Ubiquitin-60S ribosomal protein L40 OS=Macaca fascicularis GN=UBA52 PE=2 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P62984|RL40_MOUSE | Ubiquitin-60S ribosomal protein L40 OS=Mus musculus GN=Uba52 PE=1 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P68205|RL40_OPHHA | Ubiquitin-60S ribosomal protein L40 OS=Ophiophagus hannah PE=2 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P63053|RL40_PIG | Ubiquitin-60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=1 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P0C275|RL40_PONPY | Ubiquitin-60S ribosomal protein L40 OS=Pongo pygmaeus GN=UBA52 PE=2 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P0C276|RL40_SHEEP | Ubiquitin-60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=2 SV=2 | 79 | 141 | 4.0E-06 |
| sp|P62972|UBIQP_XENLA | Polyubiquitin (Fragment) OS=Xenopus laevis PE=1 SV=2 | 79 | 141 | 5.0E-06 |
| sp|P62972|UBIQP_XENLA | Polyubiquitin (Fragment) OS=Xenopus laevis PE=1 SV=2 | 79 | 141 | 5.0E-06 |
| sp|Q8SWD4|UBIQ_ENCCU | Ubiquitin OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU02_0740i PE=1 SV=1 | 79 | 141 | 6.0E-06 |
| sp|P23398|UBIQP_STRPU | Polyubiquitin (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=2 | 79 | 141 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|111850 MSEQAELAFAKTYLNTLSSQPITFANDYRQPLENSLKRVAVFPIPLPEPPKRHEAGNSISGSASAEIALTFKSLK PPASYTLTVSPTDTIASIKSQLSKTHATAPPADAQRLLVKGKALADSKLLKEYNVQSGDTVNLMVKPGVNWDPSK PKEQEILQPKPLPASETGALGLAVGDGPASGKRKHGRAPSIVLSPSPSSDMPGAAPEKDILLSLDTTTDVPTSAT ETLSTYHTTITNPDFWEKLLIFLQHEFATETDGLQAWEEFLRASKGSLTANQIAKIRDHVGVMGMAGI* |
| Coding | >Agabi119p4|111850 ATGTCCGAACAAGCTGAACTTGCGTTTGCCAAAACTTATCTGAACACGCTATCATCACAACCCATTACGTTCGCA AACGATTATCGACAGCCGCTCGAAAATTCTCTCAAACGAGTAGCAGTCTTCCCTATCCCCTTACCCGAACCACCG AAACGACATGAGGCTGGTAATTCCATCTCTGGCTCTGCCTCTGCGGAGATCGCATTGACATTTAAATCCCTCAAA CCACCTGCTTCTTATACTCTCACTGTCTCCCCGACAGACACCATCGCCTCCATAAAGTCTCAATTATCAAAGACT CACGCCACCGCACCACCAGCCGACGCTCAACGACTTCTTGTTAAAGGAAAAGCTCTTGCAGACTCCAAACTTCTG AAAGAATACAACGTCCAAAGCGGAGACACGGTGAATTTAATGGTCAAACCCGGTGTCAACTGGGATCCTTCAAAA CCCAAAGAGCAGGAGATTCTGCAGCCTAAACCGTTGCCAGCTTCGGAGACTGGTGCACTGGGACTTGCCGTTGGA GATGGGCCCGCGTCTGGGAAGAGGAAACATGGGAGGGCTCCGTCTATCGTGCTCAGCCCGAGCCCATCCTCAGAT ATGCCTGGAGCAGCGCCAGAGAAAGATATCCTGCTATCGTTAGATACCACTACGGATGTCCCTACCTCTGCCACT GAGACCTTGTCGACGTACCACACCACAATTACCAATCCGGACTTTTGGGAAAAGTTGTTGATATTTTTGCAACAC GAGTTTGCCACTGAAACTGATGGCTTGCAAGCTTGGGAAGAGTTTTTGCGTGCCAGTAAAGGTTCGCTGACTGCT AACCAGATTGCAAAGATACGTGATCATGTTGGTGTAATGGGCATGGCTGGCATTTAA |
| Transcript | >Agabi119p4|111850 ATGTCCGAACAAGCTGAACTTGCGTTTGCCAAAACTTATCTGAACACGCTATCATCACAACCCATTACGTTCGCA AACGATTATCGACAGCCGCTCGAAAATTCTCTCAAACGAGTAGCAGTCTTCCCTATCCCCTTACCCGAACCACCG AAACGACATGAGGCTGGTAATTCCATCTCTGGCTCTGCCTCTGCGGAGATCGCATTGACATTTAAATCCCTCAAA CCACCTGCTTCTTATACTCTCACTGTCTCCCCGACAGACACCATCGCCTCCATAAAGTCTCAATTATCAAAGACT CACGCCACCGCACCACCAGCCGACGCTCAACGACTTCTTGTTAAAGGAAAAGCTCTTGCAGACTCCAAACTTCTG AAAGAATACAACGTCCAAAGCGGAGACACGGTGAATTTAATGGTCAAACCCGGTGTCAACTGGGATCCTTCAAAA CCCAAAGAGCAGGAGATTCTGCAGCCTAAACCGTTGCCAGCTTCGGAGACTGGTGCACTGGGACTTGCCGTTGGA GATGGGCCCGCGTCTGGGAAGAGGAAACATGGGAGGGCTCCGTCTATCGTGCTCAGCCCGAGCCCATCCTCAGAT ATGCCTGGAGCAGCGCCAGAGAAAGATATCCTGCTATCGTTAGATACCACTACGGATGTCCCTACCTCTGCCACT GAGACCTTGTCGACGTACCACACCACAATTACCAATCCGGACTTTTGGGAAAAGTTGTTGATATTTTTGCAACAC GAGTTTGCCACTGAAACTGATGGCTTGCAAGCTTGGGAAGAGTTTTTGCGTGCCAGTAAAGGTTCGCTGACTGCT AACCAGATTGCAAAGATACGTGATCATGTTGGTGTAATGGGCATGGCTGGCATTTAA |
| Gene | >Agabi119p4|111850 ATGTCCGAACAAGCTGAACTTGCGTTTGCCAAAACTTATCTGAACACGCTATCATCACAACCCATTACGTTCGCA AACGATTATCGACAGCCGCTCGAAAATTCTCTCAAACGAGTAGCAGTCTTCCCTGTATGTGTTTGTGTTTCATCT GCGCAAATCCCTACATTCTAATCGCCACAGATCCCCTTACCCGAACCACCGAAACGACATGAGGCTGGTAATTCC ATCTCTGGCTCTGGTGAGTTCGTTTTATTGTCAATCGCAATGATTGCTGATTGTTATGGTCATTATGGTCATTTC AATCGACTCCTTTGTCTCTGCCGGTTCATCGCATTAACCGATAACTCAACACGATGCCATTGATCTATTGATGTT ACTACTCCATTATTCCTGGTCCTACGCGACGATGCGTGTCTTTTGTCCCACCCTCAAACGCGTTCAATGCCATAC ATATGACCAACCTAACACGTTCCTCCCACGCGACGTAACACACAGCCTCTGCGGAGATCGCATTGACATTTAAAT CCCTCAAACCACCTGCTTCTTATACTCTCACTGTCTCCCCGACAGACACCATCGCCTCCATAAAGTCTCAATTAT CAAAGACTCACGCCACCGCACCACCAGCCGACGCTCAACGACTTCTTGTTAAAGGAAAAGCTCTTGCAGACTCCA AACTTCTGAAAGAATACAACGTCCAAAGCGGAGACACGGTGAATTTAATGGTCAAACCCGGTGTCAACTGGGATC CTTCAAAACCCAAAGAGCAGGAGATTCTGCAGCCTAAACCGTTGCCAGCTTCGGAGACTGGTGCACTGGGACTTG CCGTTGGAGATGGGCCCGCGTCTGGGAAGAGGAAACATGGGAGGGCTCCGTCTATCGTGCTCAGCCCGAGCCCAT CCTCAGATATGCCTGGAGCAGCGCCAGAGAAAGATATCCTGCTATCGTTAGATACCACTACGGATGTCCCTACCT CTGCCACTGAGACCTTGTCGACGTACCACACCACAATTACCAATCCGGACTTTTGGGAAAAGTTGTTGATATTTT TGCAGTGAGTACTTTTCGTATATCTGGTTTAATATAAGCTGAACGTGAGTTCATAGACACGAGTTTGCCACTGAA ACTGATGGCTTGCAAGCTTGGGAAGAGTTTTTGCGTGCCAGTAAAGGTTCGCTGACTGCTAACCAGATTGCAAAG ATACGTGATCATGTTGGTGTAATGGGCATGGCTGGCATTTAA |