Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|111790
Gene name
Location	scaffold_08:1393257..1395378
Strand	-
Gene length (bp)	2121
Transcript length (bp)	1740
Coding sequence length (bp)	1740
Protein length (aa)	580

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13920	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	1.5E-09	410	440

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q3TEL6\|RN157_MOUSE	RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=1 SV=2	358	437	2.0E-08
sp\|Q7ZUL9\|MGRN1_DANRE	Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1 PE=2 SV=1	358	437	4.0E-08
sp\|Q96PX1\|RN157_HUMAN	RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=1 SV=3	358	437	6.0E-08
sp\|Q84ME1\|LUL3_ARATH	Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana GN=LUL3 PE=1 SV=1	358	437	9.0E-08
sp\|Q6INH1\|RN157_XENLA	RING finger protein 157 OS=Xenopus laevis GN=rnf157 PE=2 SV=1	358	437	1.0E-07

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q3TEL6\|RN157_MOUSE	RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=1 SV=2	358	437	2.0E-08
sp\|Q7ZUL9\|MGRN1_DANRE	Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1 PE=2 SV=1	358	437	4.0E-08
sp\|Q96PX1\|RN157_HUMAN	RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=1 SV=3	358	437	6.0E-08
sp\|Q84ME1\|LUL3_ARATH	Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana GN=LUL3 PE=1 SV=1	358	437	9.0E-08
sp\|Q6INH1\|RN157_XENLA	RING finger protein 157 OS=Xenopus laevis GN=rnf157 PE=2 SV=1	358	437	1.0E-07
sp\|Q5XIQ4\|MGRN1_RAT	E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1 PE=1 SV=1	358	437	2.0E-07
sp\|Q9D074\|MGRN1_MOUSE	E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1 SV=2	358	437	2.0E-07
sp\|O60291\|MGRN1_HUMAN	E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2	358	437	3.0E-07
sp\|Q9LFH6\|LUL2_ARATH	Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana GN=LUL2 PE=2 SV=1	325	437	6.0E-07
sp\|Q8LA32\|LUL4_ARATH	Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana GN=LUL4 PE=2 SV=1	351	437	9.0E-07
sp\|Q9S752\|LOFG2_ARATH	Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1	337	437	4.0E-06
sp\|Q9LYW5\|LUL1_ARATH	Probable E3 ubiquitin-protein ligase LUL1 OS=Arabidopsis thaliana GN=LUL1 PE=1 SV=1	360	437	7.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 20	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|111790 MSLSAWYSSQYSSWNRTRRLQQPQFLARTDTDTSRAAAAMAHHDHTAPNADSPAQNSPRNKKGSDPLFGPNIGPC SAGPAWTTTASRKKLITDDLTPEVLAGWVEKSKLSSQPTTTLQALVNLKRPSLRLSPLSTAPEDSQSPLDPSHQH LHGLEFEYDCDAPKCGIYVHVVLSKTHPEAASVPSATNQAQILVFESVSSGGFGKRLTLEEGAMLELGRYDHAAQ MAASAPENEEPAKSEVALESVAIPSDMNTSNRQSRRRFSHFPFRRRTNRSVAGPALAVVDNDPNATGNEAKKDKD KDDIEGIRVIIRLAALDEQGTELVSPNEQTTFLHIVRLGAKAAEPASENTDTDDSKPWIVKVVKREATIGPHTFQ LHEIYGLTSSANTATSDVHTYPPQATGGDEEDPSSECLLCLSSPREVVLIPCRHLVACKECALNMVEFGAGGNLT HTTEPTVPVPAAVAEGGSVSTPGTGPSEPAVPIIPSTTATRRKRKAKGWFCPVCRQPYTSLLRISTAAPPIEKRE SNTSGDGTHNHATTPGNGAMGGDVAENQDSNGEQRTGGILELALEECFFIPPFG*
Coding	>Agabi119p4\|111790 ATGAGTCTCTCTGCCTGGTACTCCTCCCAGTATTCCTCCTGGAACCGCACCCGCAGACTCCAGCAGCCCCAGTTT CTCGCACGCACGGACACAGACACTTCCAGAGCTGCCGCAGCCATGGCCCACCACGATCACACAGCCCCCAACGCT GATTCTCCAGCTCAAAACTCCCCCAGGAACAAGAAGGGCTCCGATCCTCTCTTTGGCCCTAACATCGGGCCCTGC TCAGCCGGACCCGCTTGGACGACCACCGCAAGTCGCAAGAAGCTCATCACCGACGATCTTACGCCCGAAGTGCTT GCCGGCTGGGTCGAGAAAAGCAAACTGTCATCTCAACCGACAACCACCCTACAAGCTCTCGTAAACCTCAAGCGA CCCTCTCTCCGTCTCTCTCCTCTTAGCACCGCTCCAGAAGATTCACAAAGTCCGCTAGATCCCAGTCATCAACAC TTACATGGGCTAGAATTCGAATACGATTGCGACGCACCCAAGTGCGGTATTTATGTCCATGTGGTGCTGTCAAAG ACACATCCGGAAGCTGCGTCGGTTCCTTCCGCTACCAATCAGGCCCAGATTCTTGTCTTTGAATCCGTCTCATCT GGAGGTTTCGGAAAACGACTGACACTCGAAGAAGGTGCCATGCTTGAGCTGGGACGATATGACCACGCTGCCCAG ATGGCCGCATCGGCCCCTGAGAATGAAGAGCCAGCGAAATCTGAAGTGGCGCTGGAATCTGTTGCCATACCATCT GATATGAATACATCAAATCGTCAAAGTCGGCGTCGTTTTAGCCACTTCCCTTTCCGAAGGCGAACTAACCGTAGT GTGGCGGGTCCTGCCCTCGCTGTCGTTGATAATGATCCCAATGCTACTGGCAATGAAGCAAAAAAGGACAAGGAT AAAGATGATATTGAAGGTATTCGGGTCATCATTCGACTGGCGGCACTTGATGAACAGGGAACTGAGCTCGTGTCG CCTAATGAACAAACTACATTCCTTCATATTGTTCGCCTTGGTGCCAAAGCCGCGGAACCTGCTAGCGAGAATACT GATACTGATGATAGTAAGCCATGGATCGTCAAAGTCGTTAAACGGGAGGCAACTATTGGCCCTCACACCTTCCAA CTTCACGAAATTTACGGACTTACATCGTCTGCTAACACGGCGACTAGTGATGTTCACACATACCCTCCTCAAGCA ACAGGTGGAGATGAAGAAGATCCTTCTTCAGAGTGTCTTCTCTGTCTCTCTTCTCCCCGAGAGGTCGTCCTCATT CCTTGCCGCCACCTTGTCGCCTGCAAGGAGTGTGCTCTCAACATGGTAGAATTCGGTGCTGGTGGAAATTTGACG CATACTACGGAACCAACCGTACCTGTTCCGGCTGCAGTTGCTGAAGGAGGTAGTGTATCGACACCTGGGACAGGC CCGTCCGAGCCTGCTGTTCCTATTATCCCTTCCACTACGGCTACAAGGCGTAAACGAAAGGCGAAGGGTTGGTTC TGCCCCGTTTGTCGACAGCCATATACTTCACTGCTGCGCATTTCCACGGCAGCCCCTCCTATTGAGAAACGCGAG TCGAACACATCTGGAGATGGAACTCATAACCATGCGACGACACCTGGAAATGGCGCAATGGGTGGTGATGTTGCT GAGAACCAAGATAGTAATGGTGAACAAAGGACTGGAGGGATTTTGGAGTTAGCGCTTGAGGAATGCTTTTTTATT CCCCCCTTCGGTTAA
Transcript	>Agabi119p4\|111790 ATGAGTCTCTCTGCCTGGTACTCCTCCCAGTATTCCTCCTGGAACCGCACCCGCAGACTCCAGCAGCCCCAGTTT CTCGCACGCACGGACACAGACACTTCCAGAGCTGCCGCAGCCATGGCCCACCACGATCACACAGCCCCCAACGCT GATTCTCCAGCTCAAAACTCCCCCAGGAACAAGAAGGGCTCCGATCCTCTCTTTGGCCCTAACATCGGGCCCTGC TCAGCCGGACCCGCTTGGACGACCACCGCAAGTCGCAAGAAGCTCATCACCGACGATCTTACGCCCGAAGTGCTT GCCGGCTGGGTCGAGAAAAGCAAACTGTCATCTCAACCGACAACCACCCTACAAGCTCTCGTAAACCTCAAGCGA CCCTCTCTCCGTCTCTCTCCTCTTAGCACCGCTCCAGAAGATTCACAAAGTCCGCTAGATCCCAGTCATCAACAC TTACATGGGCTAGAATTCGAATACGATTGCGACGCACCCAAGTGCGGTATTTATGTCCATGTGGTGCTGTCAAAG ACACATCCGGAAGCTGCGTCGGTTCCTTCCGCTACCAATCAGGCCCAGATTCTTGTCTTTGAATCCGTCTCATCT GGAGGTTTCGGAAAACGACTGACACTCGAAGAAGGTGCCATGCTTGAGCTGGGACGATATGACCACGCTGCCCAG ATGGCCGCATCGGCCCCTGAGAATGAAGAGCCAGCGAAATCTGAAGTGGCGCTGGAATCTGTTGCCATACCATCT GATATGAATACATCAAATCGTCAAAGTCGGCGTCGTTTTAGCCACTTCCCTTTCCGAAGGCGAACTAACCGTAGT GTGGCGGGTCCTGCCCTCGCTGTCGTTGATAATGATCCCAATGCTACTGGCAATGAAGCAAAAAAGGACAAGGAT AAAGATGATATTGAAGGTATTCGGGTCATCATTCGACTGGCGGCACTTGATGAACAGGGAACTGAGCTCGTGTCG CCTAATGAACAAACTACATTCCTTCATATTGTTCGCCTTGGTGCCAAAGCCGCGGAACCTGCTAGCGAGAATACT GATACTGATGATAGTAAGCCATGGATCGTCAAAGTCGTTAAACGGGAGGCAACTATTGGCCCTCACACCTTCCAA CTTCACGAAATTTACGGACTTACATCGTCTGCTAACACGGCGACTAGTGATGTTCACACATACCCTCCTCAAGCA ACAGGTGGAGATGAAGAAGATCCTTCTTCAGAGTGTCTTCTCTGTCTCTCTTCTCCCCGAGAGGTCGTCCTCATT CCTTGCCGCCACCTTGTCGCCTGCAAGGAGTGTGCTCTCAACATGGTAGAATTCGGTGCTGGTGGAAATTTGACG CATACTACGGAACCAACCGTACCTGTTCCGGCTGCAGTTGCTGAAGGAGGTAGTGTATCGACACCTGGGACAGGC CCGTCCGAGCCTGCTGTTCCTATTATCCCTTCCACTACGGCTACAAGGCGTAAACGAAAGGCGAAGGGTTGGTTC TGCCCCGTTTGTCGACAGCCATATACTTCACTGCTGCGCATTTCCACGGCAGCCCCTCCTATTGAGAAACGCGAG TCGAACACATCTGGAGATGGAACTCATAACCATGCGACGACACCTGGAAATGGCGCAATGGGTGGTGATGTTGCT GAGAACCAAGATAGTAATGGTGAACAAAGGACTGGAGGGATTTTGGAGTTAGCGCTTGAGGAATGCTTTTTTATT CCCCCCTTCGGTTAA
Gene	>Agabi119p4\|111790 ATGAGTCTCTCTGCCTGGTGTAGGTCTCTTGTTAGTCTCCTGCTATTCTGCGCTGACCTCCTCTCCAGACTCCTC CCAGTATTCCTCCTGGAACCGCACCCGCAGACTCCAGCAGCCCCAGTTTCTCGCACGCACGGACACAGACACTTC CAGAGCTGCCGCAGCCATGGCCCACCACGATCACACAGCCCCCAACGCTGATTCTCCAGCTCAAAACTCCCCCAG GAACAAGAAGGGCTCCGATCCTCTCTTTGGCCCTAACATCGGGCCCTGCTCAGCCGGACCCGCTTGGACGACCAC CGCAAGTCGCAAGAAGCTCATCACCGACGATCTTACGCCCGAAGTGCTTGCCGGCTGGGTCGAGAAAAGCAAACT GGTGTGTGTTTTTTCCCCGGTCCCATACGTCACTTATGCTTTCTTTTGTTCGTAGTCATCTCAACCGACAACCAC CCTACAAGCTCTCGTAAACCTCAAGCGACCCTCTCTCCGTCTCTCTCCTCTTAGCACCGCTCCAGAAGATTCACA AAGTCCGCTAGATCCCAGTCATCAACACTTACATGGGCTAGAATTCGAATACGATTGCGACGCACCCAAGTGCGG TATTTATGTCCATGTGGTGCTGTCAAAGACACATCCGGAAGCTGCGTCGGTTCCTTCCGCTACCAATCAGGCCCA GATTCTTGTCTTTGAATCCGTCTCATCTGGAGGTTTCGGAAAACGACTGACACTCGAAGAAGGTGCCATGCTTGA GCTGGGACGATATGACCACGCTGCCCAGATGGCCGCATCGGCCCCTGAGAATGAAGAGCCAGCGAAATCTGAAGT GGCGCTGGAATCTGTTGCCATACCATCTGATATGAATACATCAAATCGTCAAAGTCGGCGTCGTTTTAGCCACTT CCCTTTCCGAAGGCGAACTAACCGTAGTGTGGCGGGTCCTGCCCTCGCTGTCGTTGATAATGATCCCAATGCTAC TGGCAATGAAGCAAAAAAGGACAAGGATAAAGATGATATTGAAGGTATTCGGGTCATCATTCGACTGGCGGCACT TGATGAACAGGGAACTGAGCTCGTGTCGCCTAATGAACAAACTACATTCCTTCATATTGTTCGCCTTGGTGCCAA AGCCGCGGAACCTGCTAGCGAGAATACTGATACTGATGATAGTAAGCCATGGATCGTCAAAGTCGTTAAACGGGA GGCAACTGTGAGCGGAATTCGTATCTGATCATCTGTATACACCTTTAACAATTTCATGCATCTTAGATTGGCCCT CACACCTTCCAACTTCACGAAATTTACGGACTTACATCGTCTGCTAACACGGCGACTAGTGATGTTCACACATAC CCTCCTCAAGCAACAGGTGGAGATGAAGAAGATCCTTCTTCAGAGTGTCTTCTCTGTCTCTCTTCTCCCCGAGAG GTCGTCCTCATTCCTTGCCGCCACCTTGTCGCCTGCAAGGAGTGTGCTCTCAACATGGTAGAATTCGGTGCTGGT GGAAATTTGACGCATACTACGGAACCAACCGTACCTGTTCCGGCTGCAGTTGCTGAAGGAGGTAGTGTATCGACA CCTGGGACAGGCCCGTCCGAGCCTGCTGTTCCTATTATCCCTTCCACTACGGCTACAAGGCGTAAACGAAAGGCG AAGGGTTGGTTCTGCCCCGTTTGTCGACAGCGTAAGTCGCTTTTTCGCTTGACAACTGAAACTCAGTCGGACAAC TAATAATACTCCATTTCTATTCTTAGCATATACTTCACTGCTGCGCATTTCCACGGCAGCCCCTCCTATTGAGAA ACGCGAGTCGAACACATCTGGAGATGGAACTCATAACCATGCGACGACACCTGGAAATGGCGCAATGGGTGGTGA TGTTGCTGAGAACCAAGATAGTAATGGTGAACAAAGGACTGGAGGGATTTTGGGTGGGGCTTTCACACGCCCATC GTTTTTGAGGAACCTTGCGAGGTCGTCTAATCAACCTACTGCTGATGTTGAAAATCAGGCGGGGGTGACTAGAGT TAGCGCTTGAGGTTTGTGGCTTTTGTGCTTCAGGATTACTCTTGCGCTTGTAAACTCGACTTTCAGGAATGCTTT TTTATTCCCCCCTTCGGTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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