© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|111660 |
| Gene name | |
| Location | scaffold_08:1372278..1373515 |
| Strand | - |
| Gene length (bp) | 1237 |
| Transcript length (bp) | 732 |
| Coding sequence length (bp) | 732 |
| Protein length (aa) | 244 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.5E-11 | 57 | 125 |
| PF13865 | FoP_duplication | C-terminal duplication domain of Friend of PRMT1 | 7.1E-07 | 180 | 214 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q28FB9|THOC4_XENTR | THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1 | 10 | 146 | 2.0E-15 |
| sp|Q58EA2|THO4A_XENLA | THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1 | 10 | 149 | 3.0E-15 |
| sp|B5FXN8|THOC4_TAEGU | THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1 | 10 | 131 | 4.0E-15 |
| sp|O08583|THOC4_MOUSE | THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3 | 10 | 131 | 6.0E-14 |
| sp|Q86V81|THOC4_HUMAN | THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3 | 10 | 131 | 7.0E-14 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q28FB9|THOC4_XENTR | THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1 | 10 | 146 | 2.0E-15 |
| sp|Q58EA2|THO4A_XENLA | THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1 | 10 | 149 | 3.0E-15 |
| sp|B5FXN8|THOC4_TAEGU | THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1 | 10 | 131 | 4.0E-15 |
| sp|O08583|THOC4_MOUSE | THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3 | 10 | 131 | 6.0E-14 |
| sp|Q86V81|THOC4_HUMAN | THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3 | 10 | 131 | 7.0E-14 |
| sp|Q3T0I4|THOC4_BOVIN | THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1 | 10 | 131 | 8.0E-14 |
| sp|Q6GLW1|THO4B_XENLA | THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1 | 10 | 131 | 9.0E-14 |
| sp|Q8L773|THO4A_ARATH | THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1 | 16 | 144 | 1.0E-13 |
| sp|Q9JJW6|ALRF2_MOUSE | Aly/REF export factor 2 OS=Mus musculus GN=Alyref2 PE=1 SV=1 | 10 | 132 | 2.0E-13 |
| sp|Q8L719|THO4B_ARATH | THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1 | 10 | 155 | 4.0E-11 |
| sp|Q94EH8|THO4C_ARATH | THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1 | 57 | 150 | 2.0E-08 |
| sp|B0BN49|RBMX2_RAT | RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2 PE=2 SV=1 | 57 | 132 | 4.0E-08 |
| sp|Q8R0F5|RBMX2_MOUSE | RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1 SV=1 | 57 | 132 | 4.0E-08 |
| sp|Q28BZ1|RBM8A_XENTR | RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1 | 57 | 139 | 9.0E-08 |
| sp|Q6PH90|RB8AB_XENLA | RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1 | 57 | 139 | 1.0E-07 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 57 | 137 | 1.0E-07 |
| sp|Q9DF42|RB8AA_XENLA | RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1 | 57 | 139 | 1.0E-07 |
| sp|Q9Y388|RBMX2_HUMAN | RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1 SV=2 | 57 | 132 | 2.0E-07 |
| sp|Q6NQ72|THO4D_ARATH | THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1 | 56 | 132 | 3.0E-07 |
| sp|Q39061|CP33_ARATH | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1 | 47 | 138 | 5.0E-07 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 57 | 137 | 8.0E-07 |
| sp|P52272|HNRPM_HUMAN | Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3 | 57 | 137 | 8.0E-07 |
| sp|Q86U06|RBM23_HUMAN | Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1 | 56 | 146 | 2.0E-06 |
| sp|Q5D018|RBM8A_DANRE | RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1 | 57 | 136 | 2.0E-06 |
| sp|Q9ZQA8|PABP7_ARATH | Polyadenylate-binding protein 7 OS=Arabidopsis thaliana GN=PAB7 PE=2 SV=1 | 52 | 153 | 2.0E-06 |
| sp|Q9URV0|YBLC_SCHPO | Uncharacterized RNA-binding protein C106.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC106.12c PE=3 SV=1 | 21 | 209 | 2.0E-06 |
| sp|Q9P2K5|MYEF2_HUMAN | Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3 | 57 | 128 | 2.0E-06 |
| sp|Q8C854|MYEF2_MOUSE | Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1 | 57 | 128 | 2.0E-06 |
| sp|Q9FGS0|CP31B_ARATH | RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1 | 56 | 137 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|111660 MASFKSTHKPYSRPTASRAPEGQWLHDKAPGSNIDIPRTSRPTAGGTTPSAAPTDKILVSNLHYEITPKDLNVIF GQIGTLIREPLIRYDRSGRSSGQAIVSFETVAEAVRAKKQFNGILAKGQPMTVDFLAPRPPRGRSVSAPHGSLLN RVQKPALLDRLAQDDSNIKTTSVRGVGPVRSKPGRATRPKKGPPKPPTAEELDKELDAFMGDSNTAGPAVEAPAD TAVEAEKVPALAQDVEMA* |
| Coding | >Agabi119p4|111660 ATGGCGTCGTTCAAATCAACTCACAAGCCGTACAGTCGGCCAACAGCCTCAAGAGCGCCTGAAGGCCAATGGCTA CACGACAAGGCACCAGGTTCAAATATTGACATTCCGCGTACCTCCAGACCCACAGCGGGGGGGACCACCCCTTCT GCAGCGCCGACGGACAAAATCCTGGTGTCAAATCTTCATTATGAAATTACGCCCAAGGATCTCAATGTCATTTTC GGACAAATTGGCACACTCATACGTGAGCCACTAATCAGGTACGACCGCAGCGGCCGCTCATCTGGACAGGCGATT GTCTCATTTGAAACGGTTGCTGAGGCTGTACGTGCCAAGAAACAGTTCAATGGTATTTTAGCCAAAGGACAACCT ATGACGGTTGACTTCCTCGCACCAAGACCGCCGCGTGGCCGATCTGTCAGTGCACCACACGGTTCGTTACTCAAT AGAGTTCAAAAGCCAGCACTGTTGGACCGGCTCGCTCAAGATGACTCTAATATCAAGACAACATCTGTTCGAGGT GTTGGTCCCGTTCGCTCAAAACCTGGACGCGCCACGCGTCCGAAGAAGGGACCCCCAAAGCCCCCTACGGCCGAA GAGTTGGATAAGGAGTTGGATGCCTTCATGGGTGATTCAAACACCGCCGGTCCTGCGGTCGAGGCCCCCGCTGAT ACCGCTGTCGAGGCGGAGAAAGTGCCTGCGCTTGCCCAAGACGTTGAGATGGCTTAG |
| Transcript | >Agabi119p4|111660 ATGGCGTCGTTCAAATCAACTCACAAGCCGTACAGTCGGCCAACAGCCTCAAGAGCGCCTGAAGGCCAATGGCTA CACGACAAGGCACCAGGTTCAAATATTGACATTCCGCGTACCTCCAGACCCACAGCGGGGGGGACCACCCCTTCT GCAGCGCCGACGGACAAAATCCTGGTGTCAAATCTTCATTATGAAATTACGCCCAAGGATCTCAATGTCATTTTC GGACAAATTGGCACACTCATACGTGAGCCACTAATCAGGTACGACCGCAGCGGCCGCTCATCTGGACAGGCGATT GTCTCATTTGAAACGGTTGCTGAGGCTGTACGTGCCAAGAAACAGTTCAATGGTATTTTAGCCAAAGGACAACCT ATGACGGTTGACTTCCTCGCACCAAGACCGCCGCGTGGCCGATCTGTCAGTGCACCACACGGTTCGTTACTCAAT AGAGTTCAAAAGCCAGCACTGTTGGACCGGCTCGCTCAAGATGACTCTAATATCAAGACAACATCTGTTCGAGGT GTTGGTCCCGTTCGCTCAAAACCTGGACGCGCCACGCGTCCGAAGAAGGGACCCCCAAAGCCCCCTACGGCCGAA GAGTTGGATAAGGAGTTGGATGCCTTCATGGGTGATTCAAACACCGCCGGTCCTGCGGTCGAGGCCCCCGCTGAT ACCGCTGTCGAGGCGGAGAAAGTGCCTGCGCTTGCCCAAGACGTTGAGATGGCTTAG |
| Gene | >Agabi119p4|111660 ATGGCGTCGTTCAAATCAACTCACAAGCCGTACAGTGTTAGCTGCCTATTGTGTTCTGCATTCGTTTCCTGACCA ACGCGTTTTTGGGCTTCTGAAACACAGCGGCCAACAGCCTCAAGAGCGCCTGAAGGCCAATGGCTACACGACAAG GCACCAGGTTCAAATATTGACATTCCGCGTACCTCCAGACCCACAGCGGGGGGGACCACCCCTTCTGCAGCGCCG ACGGACAAAATCCTGGTGTCAAATCTTCATTATGAAATTACGCCCAAGGATCTCAATGTGCGTTCCTGTCCTTCT TCCATTTTCCTTCCCTCTACGCGTAGCCATATGCAATGCGCCTCTAGCCTCGTTTTTCCTTCCCAACCCCATTCT CGCCTATCTCGTACGCTGGTCTGGCCTTCATCTTACGTCAATACTTCTTCAGGTCATTTTCGGACAAATTGGCAC ACTCATACGTGAGCCACTAATCAGGGTACGGCAAGCCCCCAAGCTCTCCCCTCCATTGAAGTAAAGAACAAACGC CAATGAAAATTCGGACTTTTCACTTTTCTCTTACCTGACCTATTTCTTGGTTGCACATCACATTGCATCTGATCA TTTCTCCTGATTACGTCAATGGGTTCACGTTGACGACTTGTTCTTGGGGATTTGATTGGCTTGTAATAGTACGAC CGCAGCGGCCGCTCATCTGGACAGGCGATTGTCTCATTTGAAACGGTTGCTGAGGCTGTACGTGCCAAGAAACAG TTCAATGGTATTTTAGCCAAAGGTGTGTGTATCTTACTTCCCAGTATAATCCGGATGATAACCACAACCCTAGGA CAACCTATGACGGTTGACTTCCTCGCACCAAGACCGCCGCGTGGCCGATCTGTCAGTGCACCACACGGTTCGTTA CTCAATAGAGTTCAAAAGCCAGCACTGTTGGACCGGCTCGCTCAAGATGACTCTAATATCAAGACAACATCTGTT CGGTGAGTTCATATGACTGCAACTGCGTCTGGTTTTCTTATGGGTGAGCAGAGGTGTTGGTCCCGTTCGCTCAAA ACCTGGACGCGCCACGCGTCCGAAGAAGGGACCCCCAAAGCCCCCTACGGCCGAAGAGTTGGATAAGGAGTTGGA TGCCTTCATGGGTGATTCAAACACCGCCGGTCCTGCGGTCGAGGCCCCCGCTGATACCGCTGTCGAGGCGGAGAA AGTGCCTGCGCTTGCCCAAGACGTTGAGATGGCTTAG |