Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|111210
Gene name
Locationscaffold_08:1218572..1220372
Strand-
Gene length (bp)1800
Transcript length (bp)681
Coding sequence length (bp)681
Protein length (aa) 227

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.2E-14 70 138
PF13865 FoP_duplication C-terminal duplication domain of Friend of PRMT1 3.2E-07 166 213

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q09330|MLO3_SCHPO mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlo3 PE=1 SV=1 1 214 5.0E-44
sp|Q12159|YRA1_YEAST RNA annealing protein YRA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRA1 PE=1 SV=2 1 210 3.0E-16
sp|Q8L773|THO4A_ARATH THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1 61 145 7.0E-14
sp|Q8L719|THO4B_ARATH THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1 66 145 8.0E-14
sp|Q9JJW6|ALRF2_MOUSE Aly/REF export factor 2 OS=Mus musculus GN=Alyref2 PE=1 SV=1 1 150 4.0E-13
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Swissprot ID Swissprot Description Start End E-value
sp|Q09330|MLO3_SCHPO mRNA export protein mlo3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mlo3 PE=1 SV=1 1 214 5.0E-44
sp|Q12159|YRA1_YEAST RNA annealing protein YRA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRA1 PE=1 SV=2 1 210 3.0E-16
sp|Q8L773|THO4A_ARATH THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1 61 145 7.0E-14
sp|Q8L719|THO4B_ARATH THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1 66 145 8.0E-14
sp|Q9JJW6|ALRF2_MOUSE Aly/REF export factor 2 OS=Mus musculus GN=Alyref2 PE=1 SV=1 1 150 4.0E-13
sp|B5FXN8|THOC4_TAEGU THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1 61 145 2.0E-12
sp|Q58EA2|THO4A_XENLA THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1 66 145 4.0E-12
sp|Q28FB9|THOC4_XENTR THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1 66 145 5.0E-12
sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3 69 145 1.0E-11
sp|Q3T0I4|THOC4_BOVIN THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1 69 145 1.0E-11
sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3 69 145 1.0E-11
sp|Q6GLW1|THO4B_XENLA THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1 66 145 5.0E-11
sp|Q94EH8|THO4C_ARATH THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1 70 158 1.0E-10
sp|Q6NQ72|THO4D_ARATH THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1 69 145 2.0E-09
sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1 65 137 1.0E-06
sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1 65 137 1.0E-06
sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1 65 137 1.0E-06
sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1 65 137 1.0E-06
sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1 65 137 1.0E-06
sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1 65 137 1.0E-06
sp|Q9BY77|PDIP3_HUMAN Polymerase delta-interacting protein 3 OS=Homo sapiens GN=POLDIP3 PE=1 SV=2 60 144 2.0E-06
sp|Q8BG81|PDIP3_MOUSE Polymerase delta-interacting protein 3 OS=Mus musculus GN=Poldip3 PE=1 SV=1 60 144 2.0E-06
sp|Q9ZUU4|CP29B_ARATH RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 10 142 2.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 37 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|111210
MDKDLDSIISDTKKATIANKRRNPRRNVRTQVLGSPAATAATRPRVTGNAAAAPTKNTLPAGVPSTADKIIVSNL
PADVNEGQIKELFASTVGPTKEVHLNYDASGRSKGIAAVTFSKKGDANRAYTQYHNRLIDGKRPMKIEIVFDPSR
SVSLASRVAPAPVSNGTQVAKTTTAGGGGGGRGRRPRRGQKRGERPQKSAADLDAEMEDYTASNAPAAAAPAATA
A*
Coding >Agabi119p4|111210
ATGGACAAAGATCTTGACTCTATCATCTCCGACACTAAGAAGGCTACCATCGCCAACAAGCGTCGTAACCCCCGT
CGTAACGTTCGCACTCAAGTTCTTGGAAGTCCTGCCGCCACTGCTGCTACTCGTCCTCGTGTTACAGGCAATGCT
GCTGCTGCCCCTACAAAAAACACTCTCCCTGCTGGCGTGCCATCGACGGCAGACAAGATTATTGTCTCAAATCTT
CCTGCGGACGTGAATGAGGGTCAAATCAAGGAATTGTTCGCCTCGACTGTTGGTCCGACCAAAGAGGTGCACCTC
AATTACGACGCATCTGGTCGATCAAAAGGTATCGCTGCCGTCACTTTTTCGAAGAAAGGCGACGCCAACAGGGCG
TACACGCAATATCATAACCGGCTCATCGACGGAAAACGCCCTATGAAGATTGAAATCGTCTTTGATCCCTCGCGC
TCTGTATCTCTCGCGTCGCGGGTGGCTCCTGCACCTGTTTCTAACGGAACGCAAGTCGCGAAGACTACAACTGCT
GGTGGTGGTGGTGGCGGACGTGGTAGGCGTCCTAGGAGGGGTCAGAAGAGAGGTGAACGACCACAGAAATCGGCT
GCTGACCTTGATGCTGAGATGGAGGACTACACTGCATCGAATGCGCCTGCAGCCGCCGCACCTGCTGCGACTGCT
GCTTAA
Transcript >Agabi119p4|111210
ATGGACAAAGATCTTGACTCTATCATCTCCGACACTAAGAAGGCTACCATCGCCAACAAGCGTCGTAACCCCCGT
CGTAACGTTCGCACTCAAGTTCTTGGAAGTCCTGCCGCCACTGCTGCTACTCGTCCTCGTGTTACAGGCAATGCT
GCTGCTGCCCCTACAAAAAACACTCTCCCTGCTGGCGTGCCATCGACGGCAGACAAGATTATTGTCTCAAATCTT
CCTGCGGACGTGAATGAGGGTCAAATCAAGGAATTGTTCGCCTCGACTGTTGGTCCGACCAAAGAGGTGCACCTC
AATTACGACGCATCTGGTCGATCAAAAGGTATCGCTGCCGTCACTTTTTCGAAGAAAGGCGACGCCAACAGGGCG
TACACGCAATATCATAACCGGCTCATCGACGGAAAACGCCCTATGAAGATTGAAATCGTCTTTGATCCCTCGCGC
TCTGTATCTCTCGCGTCGCGGGTGGCTCCTGCACCTGTTTCTAACGGAACGCAAGTCGCGAAGACTACAACTGCT
GGTGGTGGTGGTGGCGGACGTGGTAGGCGTCCTAGGAGGGGTCAGAAGAGAGGTGAACGACCACAGAAATCGGCT
GCTGACCTTGATGCTGAGATGGAGGACTACACTGCATCGAATGCGCCTGCAGCCGCCGCACCTGCTGCGACTGCT
GCTTAA
Gene >Agabi119p4|111210
ATGGACAAAGATCTTGACTCTGTGTGTATAAAGCGGTTTGGAAACCAAGTGCTGCTTGACTGAATGACTCTGTTC
TAGATCATCTCCGACACTAAGAAGGCTACCATCGCCAACAAGCGTCGTAACCCCCGTCGTAACGTTCGCACTCAA
GTTCTTGGAAGTCCTGCCGCCACTGCTGCTACTCGTCCTCGTGTTACAGGCAATGCTGCTGCTGCCCCTACAAAA
AACACTCTCCCTGCTGGCGTGCCATCGACGGCAGACAAGATTATTGTCTCAAATCTTCCTGCGGACGTGAATGAG
GGTCAAATCAAGGTTTGTGTTTAATACAACTCGTGTTTTTTATGAATTTGTTTCTGACAATTTTAAATAGGAATT
GTTCGCCTCGACTGTTGGTCCGACCAAAGAGGTGCACCTCAATTACGACGCATCTGGTCGATCAAAAGGTATCGC
TGCCGTCACTTTTTCGAAGAAAGGCGACGCCAACAGGGCGTACACGCAATATCATAACCGGCTCATCGACGGAAG
TTAGTATCCAGCCCACCCTTTCAAACTTATCTCTCTCGCCCTCTTTCCCCTTCCCCTTCTGCCTTCCTTAGCGCG
CGAATCGTTCTTGGCTCCTTGTCTCTGTTTGAGCTCCTGAGAAACGCCATTTTTCCGCCATGAGGGGACTCCAAA
AGGACATATCTTGTTGCGGCCTCGTTTGTGGTTTGAAGGATACCCTTGTGTTGCGATGCGGGACAAAAGGGCGAG
CCAAGCTGCCTTTACTCCTTTGGGTTATTGGACGTGTCCGCGTGTCATTGGGTGGCTCATCGTTGCCAGGCTTGA
TCAACCTGGTGATGCTATTATGCCATTTGTCCTCGTTGGCAAACCCATGACCACCTTGTCGGCTTTATGTCGTAA
TGGGTGTTTGCGACCCCAATATCGCTCGCTATTTTATCTGTCGAGAGACACGTTAAAAGCGATGCTCTGCCCGCG
GCCTTGTTTGGTCAGTCGCGTTGATATCACATGAGCGGTTATTCGAGTGAGCACATTGGGGAGGTTGATGTTATG
GGCCGGTGATGAAACTGTTCCAACTTGCGTCTTCCTAACTACTTCCAGACTTGCTTGCGGTTCGAACCCGATTCG
GATCAAGATGTGCAATGATGGGTTTGTGCGATGTTGGTCCGTCAACGCAAGCCGTCCAAGAACAAGACTGAGAGT
ACGTAAAAATGGCGATGGCGAATTGGCAATGAGACAACAGAGACAAAGCCTACGATTTACCAATTGCTTTAAAGA
AGCACATAACGTTCCTTATTTGAAGGGACCTTTTTCTTTTGCGCGAATATCCTCTCCAATTTTAATTGCTTGGTC
TTGGTCTTGCAACAGTCGGCTAATCTTGATCCGTTCTTCCTTTCCCTCTCGAACTTCGAACAGAACGCCCTATGA
AGATTGAAATCGTCTTTGATCCCTCGCGCTCTGTATCTCTCGCGTCGCGGGTGGCTCCTGCACCTGTTTCTAACG
GAACGCAAGTCGCGAAGTATGTTTGAAGTTTATCGATAACATGGCCCTTATTGACTTCATGTTTTGGTCGAAAAG
GACTACAACTGCTGGTGGTGGTGGTGGCGGACGTGGTAGGCGTCCTAGGAGGGGTCAGAAGAGAGGTGAACGACC
ACAGAAATCGGCTGCTGACCTTGATGCTGAGATGGAGGTTCGTGTCTATTTCTTCCACGTGCTCACGCAAATGAC
TGACTCTCGTGTTAACAGGACTACACTGCATCGAATGCGCCTGCAGCCGCCGCACCTGCTGCGACTGCTGCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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