Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|111040
Gene name
Locationscaffold_08:1178314..1178721
Strand-
Gene length (bp)407
Transcript length (bp)288
Coding sequence length (bp)288
Protein length (aa) 96

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01423 LSM LSM domain 2.1E-15 3 70

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q6ZWM4|LSM8_MOUSE U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=1 SV=3 2 95 1.0E-30
sp|O95777|LSM8_HUMAN U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3 2 95 1.0E-30
sp|Q3ZCE0|LSM8_BOVIN U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3 2 95 1.0E-30
sp|Q5RCP3|LSM8_PONAB U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3 2 95 1.0E-30
sp|Q8VYI0|LSM8_ARATH Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1 2 95 8.0E-30
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Swissprot ID Swissprot Description Start End E-value
sp|Q6ZWM4|LSM8_MOUSE U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=1 SV=3 2 95 1.0E-30
sp|O95777|LSM8_HUMAN U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3 2 95 1.0E-30
sp|Q3ZCE0|LSM8_BOVIN U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3 2 95 1.0E-30
sp|Q5RCP3|LSM8_PONAB U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3 2 95 1.0E-30
sp|Q8VYI0|LSM8_ARATH Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1 2 95 8.0E-30
sp|Q1ZXD5|LSM8_DICDI Probable U6 snRNA-associated Sm-like protein LSm8 OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1 1 95 4.0E-26
sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1 3 95 2.0E-20
sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1 3 93 1.0E-13
sp|Q8LFL8|LSM1B_ARATH Sm-like protein LSM1B OS=Arabidopsis thaliana GN=LSM1B PE=1 SV=1 2 75 2.0E-13
sp|Q945P8|LSM1A_ARATH Sm-like protein LSM1A OS=Arabidopsis thaliana GN=LSM1A PE=1 SV=1 2 75 4.0E-13
sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM1 PE=1 SV=1 8 73 7.0E-12
sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1 2 73 1.0E-11
sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=1 SV=1 8 85 3.0E-08
sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1 8 85 3.0E-08
sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1 2 85 3.0E-08
sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1 4 79 3.0E-07
sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1 2 66 3.0E-07
sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1 SV=1 4 82 2.0E-06
sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus gallus GN=SNRPB PE=2 SV=1 2 80 2.0E-06
sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus GN=SNRPN PE=2 SV=1 7 80 2.0E-06
sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens GN=SNRPN PE=1 SV=1 7 80 3.0E-06
sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis GN=SNRPN PE=2 SV=1 7 80 3.0E-06
sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus musculus GN=Snrpn PE=2 SV=1 7 80 3.0E-06
sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo abelii GN=SNRPN PE=2 SV=1 7 80 3.0E-06
sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus norvegicus GN=Snrpn PE=2 SV=1 7 80 3.0E-06
sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster GN=SNRPG PE=1 SV=1 4 73 4.0E-06
sp|P47093|LSM8_YEAST U6 snRNA-associated Sm-like protein LSm8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM8 PE=1 SV=2 2 80 4.0E-06
sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus GN=Snrpb PE=1 SV=1 2 80 4.0E-06
sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B' OS=Homo sapiens GN=SNRPB PE=1 SV=2 2 80 5.0E-06
sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus europaeus GN=SNRPB PE=2 SV=1 2 80 5.0E-06
sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus GN=SNRPB PE=2 SV=1 2 80 6.0E-06
sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B' OS=Monodelphis domestica GN=SNRPB PE=2 SV=1 2 80 7.0E-06
sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1 7 80 9.0E-06
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 28 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|111040
MSSLQGYVDRRVLLVLQDGRAIVGVMAGFDQRSNIVLSDCKERVFSMDEGVEEIALGLYLVKGDMISLIGELDEE
IDSSVDLSTIRADPLQPIRY*
Coding >Agabi119p4|111040
ATGTCCAGCCTCCAGGGCTACGTCGACCGTCGTGTCCTCCTTGTTCTTCAGGATGGTCGCGCAATTGTGGGTGTC
ATGGCAGGTTTTGACCAGAGGTCAAATATTGTCCTCTCCGATTGTAAAGAACGCGTGTTCAGCATGGATGAAGGG
GTAGAAGAAATCGCTTTGGGTCTATATCTCGTCAAAGGAGATATGATCAGTCTTATTGGTGAACTAGACGAGGAA
ATCGATAGCAGCGTTGATTTGTCTACGATTCGAGCCGATCCTCTACAACCCATTCGATATTGA
Transcript >Agabi119p4|111040
ATGTCCAGCCTCCAGGGCTACGTCGACCGTCGTGTCCTCCTTGTTCTTCAGGATGGTCGCGCAATTGTGGGTGTC
ATGGCAGGTTTTGACCAGAGGTCAAATATTGTCCTCTCCGATTGTAAAGAACGCGTGTTCAGCATGGATGAAGGG
GTAGAAGAAATCGCTTTGGGTCTATATCTCGTCAAAGGAGATATGATCAGTCTTATTGGTGAACTAGACGAGGAA
ATCGATAGCAGCGTTGATTTGTCTACGATTCGAGCCGATCCTCTACAACCCATTCGATATTGA
Gene >Agabi119p4|111040
ATGTCCAGCCTCCAGGGCTACGTCGACCGTCGTGTCCTCCTTGTTCTTCAGGATGGTCGCGCAATTGTGGTATAA
CTCCATCCTGATCTTCCAATATCTACATCTCATCGGCTTATAGGGTGTCATGGCAGGTTTTGACCAGAGGTCAAA
TATTGTCCTCTCCGATTGTAAAGAACGCGTGTTCAGCATGGATGAAGGGGTAGAAGAAATCGCTTTGGGTCTATA
TCTCGTCAAAGGAGATATGATGTACGCGATTTTCAAATTCTATTCTTTACCTGAGATCGTACTGACACCTGTTTT
ATTATCTCTTTTATAGCAGTCTTATTGGTGAACTAGACGAGGAAATCGATAGCAGCGTTGATTTGTCTACGATTC
GAGCCGATCCTCTACAACCCATTCGATATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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