© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|104690 |
| Gene name | |
| Location | scaffold_07:1803680..1804778 |
| Strand | + |
| Gene length (bp) | 1098 |
| Transcript length (bp) | 987 |
| Coding sequence length (bp) | 987 |
| Protein length (aa) | 329 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02544 | Steroid_dh | 3-oxo-5-alpha-steroid 4-dehydrogenase | 1.5E-15 | 122 | 240 |
| PF02544 | Steroid_dh | 3-oxo-5-alpha-steroid 4-dehydrogenase | 5.2E-08 | 285 | 328 |
| PF06966 | DUF1295 | Protein of unknown function (DUF1295) | 5.1E-06 | 137 | 243 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UT20|YFY8_SCHPO | Uncharacterized protein C9.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC9.08c PE=3 SV=1 | 19 | 328 | 6.0E-55 |
| sp|P24008|S5A1_RAT | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Rattus norvegicus GN=Srd5a1 PE=1 SV=2 | 35 | 328 | 2.0E-23 |
| sp|A5PJS2|S5A1_BOVIN | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Bos taurus GN=SRD5A1 PE=2 SV=1 | 24 | 328 | 3.0E-22 |
| sp|Q5K2N1|DET2_SOLLC | Steroid 5-alpha-reductase DET2 OS=Solanum lycopersicum GN=DET2 PE=1 SV=1 | 14 | 327 | 2.0E-21 |
| sp|Q68FF9|S5A1_MOUSE | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Mus musculus GN=Srd5a1 PE=2 SV=2 | 35 | 328 | 1.0E-20 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UT20|YFY8_SCHPO | Uncharacterized protein C9.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC9.08c PE=3 SV=1 | 19 | 328 | 6.0E-55 |
| sp|P24008|S5A1_RAT | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Rattus norvegicus GN=Srd5a1 PE=1 SV=2 | 35 | 328 | 2.0E-23 |
| sp|A5PJS2|S5A1_BOVIN | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Bos taurus GN=SRD5A1 PE=2 SV=1 | 24 | 328 | 3.0E-22 |
| sp|Q5K2N1|DET2_SOLLC | Steroid 5-alpha-reductase DET2 OS=Solanum lycopersicum GN=DET2 PE=1 SV=1 | 14 | 327 | 2.0E-21 |
| sp|Q68FF9|S5A1_MOUSE | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Mus musculus GN=Srd5a1 PE=2 SV=2 | 35 | 328 | 1.0E-20 |
| sp|P18405|S5A1_HUMAN | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Homo sapiens GN=SRD5A1 PE=1 SV=1 | 36 | 327 | 8.0E-20 |
| sp|Q28891|S5A1_MACFA | 3-oxo-5-alpha-steroid 4-dehydrogenase 1 OS=Macaca fascicularis GN=SRD5A1 PE=1 SV=1 | 36 | 327 | 1.0E-19 |
| sp|Q2QDF6|DET2_GOSHI | Steroid 5-alpha-reductase DET2 OS=Gossypium hirsutum GN=DET2 PE=1 SV=1 | 14 | 327 | 2.0E-17 |
| sp|Q38944|DET2_ARATH | Steroid 5-alpha-reductase DET2 OS=Arabidopsis thaliana GN=DET2 PE=1 SV=2 | 28 | 327 | 8.0E-17 |
| sp|P31213|S5A2_HUMAN | 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Homo sapiens GN=SRD5A2 PE=1 SV=1 | 55 | 327 | 2.0E-11 |
| sp|Q99N99|S5A2_MOUSE | 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Mus musculus GN=Srd5a2 PE=2 SV=1 | 22 | 328 | 7.0E-11 |
| sp|Q28892|S5A2_MACFA | 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Macaca fascicularis GN=SRD5A2 PE=1 SV=1 | 55 | 327 | 1.0E-10 |
| sp|O18765|S5A2_PIG | 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Sus scrofa GN=SRD5A2 PE=2 SV=2 | 55 | 328 | 2.0E-10 |
| sp|P31214|S5A2_RAT | 3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Rattus norvegicus GN=Srd5a2 PE=1 SV=1 | 22 | 328 | 2.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0006629 | lipid metabolic process | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 57 | 79 | 22 |
| 3 | 122 | 144 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|104690 MSYAYSNGPALQAFNYARKWFTLLSLSTSPLLFFINAPFGRFSPKSDSLFIVDGRKAWIVMEIVSPIAFIYSLKS AFLNQQNPGLPSISSPRGILAALYLIHYANRAIISPLRTPSRSKQHIIVSLSAIFFNILNGSLMGSYLSSPFTLI WLQSPQFTQRVQFKVGLALWAAGFVGNIVHDEILLELRRKAKTTGKSREQNNGERNEEYYGIPYGLLYRYISYPN YFCEWIEWIGFALCAGPLPFQPSSLSLSTIIATFSPVQLFSTIKNVINEPAANFAPSLSPPWIFVLSEIVLMLPR AYKGHLWYKSKFGDSYPRERKAVVPFVL* |
| Coding | >Agabi119p4|104690 ATGTCGTACGCATATTCTAATGGCCCAGCACTCCAGGCCTTCAACTATGCTCGCAAGTGGTTCACTCTCCTGTCT CTCAGCACCTCCCCGCTCCTTTTCTTCATAAACGCACCCTTCGGGCGTTTCTCTCCAAAATCTGACAGCCTATTC ATCGTTGATGGAAGAAAGGCATGGATAGTGATGGAGATTGTCTCTCCTATCGCGTTCATCTACTCGCTGAAGTCT GCTTTCCTGAATCAGCAAAACCCTGGATTGCCGAGTATTTCATCTCCAAGGGGCATTCTTGCCGCACTCTACCTG ATCCATTACGCCAACCGGGCTATCATCTCGCCTCTTCGTACTCCTTCACGTTCCAAGCAACACATCATCGTGTCC TTATCCGCTATCTTCTTCAACATACTCAATGGCTCACTGATGGGGTCGTATCTATCCAGCCCATTCACCCTCATC TGGTTGCAGTCTCCTCAGTTCACTCAACGCGTCCAGTTCAAAGTGGGTTTGGCTCTTTGGGCCGCTGGCTTCGTT GGAAACATTGTGCATGATGAAATCCTACTGGAACTTCGCCGTAAAGCCAAGACCACAGGCAAAAGTCGAGAACAA AACAATGGTGAACGTAATGAGGAATATTATGGCATCCCATATGGGCTGCTCTATAGATATATCTCGTATCCAAAT TACTTCTGCGAGTGGATCGAATGGATCGGATTTGCTCTTTGTGCTGGACCTTTGCCCTTCCAACCCTCCTCGCTA TCGCTTTCAACAATTATTGCAACGTTCTCGCCGGTTCAGCTGTTTTCGACCATCAAGAATGTTATTAACGAGCCC GCTGCCAACTTTGCGCCGAGCCTATCCCCTCCGTGGATTTTTGTTTTGAGCGAGATTGTGTTGATGCTTCCTCGC GCGTATAAGGGGCATCTTTGGTACAAGTCAAAGTTTGGTGATAGCTACCCTAGAGAGAGGAAAGCTGTTGTACCG TTCGTTTTGTGA |
| Transcript | >Agabi119p4|104690 ATGTCGTACGCATATTCTAATGGCCCAGCACTCCAGGCCTTCAACTATGCTCGCAAGTGGTTCACTCTCCTGTCT CTCAGCACCTCCCCGCTCCTTTTCTTCATAAACGCACCCTTCGGGCGTTTCTCTCCAAAATCTGACAGCCTATTC ATCGTTGATGGAAGAAAGGCATGGATAGTGATGGAGATTGTCTCTCCTATCGCGTTCATCTACTCGCTGAAGTCT GCTTTCCTGAATCAGCAAAACCCTGGATTGCCGAGTATTTCATCTCCAAGGGGCATTCTTGCCGCACTCTACCTG ATCCATTACGCCAACCGGGCTATCATCTCGCCTCTTCGTACTCCTTCACGTTCCAAGCAACACATCATCGTGTCC TTATCCGCTATCTTCTTCAACATACTCAATGGCTCACTGATGGGGTCGTATCTATCCAGCCCATTCACCCTCATC TGGTTGCAGTCTCCTCAGTTCACTCAACGCGTCCAGTTCAAAGTGGGTTTGGCTCTTTGGGCCGCTGGCTTCGTT GGAAACATTGTGCATGATGAAATCCTACTGGAACTTCGCCGTAAAGCCAAGACCACAGGCAAAAGTCGAGAACAA AACAATGGTGAACGTAATGAGGAATATTATGGCATCCCATATGGGCTGCTCTATAGATATATCTCGTATCCAAAT TACTTCTGCGAGTGGATCGAATGGATCGGATTTGCTCTTTGTGCTGGACCTTTGCCCTTCCAACCCTCCTCGCTA TCGCTTTCAACAATTATTGCAACGTTCTCGCCGGTTCAGCTGTTTTCGACCATCAAGAATGTTATTAACGAGCCC GCTGCCAACTTTGCGCCGAGCCTATCCCCTCCGTGGATTTTTGTTTTGAGCGAGATTGTGTTGATGCTTCCTCGC GCGTATAAGGGGCATCTTTGGTACAAGTCAAAGTTTGGTGATAGCTACCCTAGAGAGAGGAAAGCTGTTGTACCG TTCGTTTTGTGA |
| Gene | >Agabi119p4|104690 ATGTCGTACGCATATTCTAATGGCCCAGCACTCCAGGCCTTCAACTGTACGCACCGTCTTCCTTGATGTACGCAC CAGTCTCTGACGTTAATGTCGGTCAACAGATGCTCGCAAGTGGTTCACTCTCCTGTCTCTCAGCACCTCCCCGCT CCTTTTCTTCATAAACGCACCCTTCGGGCGTTTCTCTCCAAAATCTGACAGCCTATTCATCGTTGATGGTCCGTA TAGTATGGAATTTGAGTACAATACGCGTTTGCTGAAATCTATCCAGGAAGAAAGGCATGGATAGTGATGGAGATT GTCTCTCCTATCGCGTTCATCTACTCGCTGAAGTCTGCTTTCCTGAATCAGCAAAACCCTGGATTGCCGAGTATT TCATCTCCAAGGGGCATTCTTGCCGCACTCTACCTGATCCATTACGCCAACCGGGCTATCATCTCGCCTCTTCGT ACTCCTTCACGTTCCAAGCAACACATCATCGTGTCCTTATCCGCTATCTTCTTCAACATACTCAATGGCTCACTG ATGGGGTCGTATCTATCCAGCCCATTCACCCTCATCTGGTTGCAGTCTCCTCAGTTCACTCAACGCGTCCAGTTC AAAGTGGGTTTGGCTCTTTGGGCCGCTGGCTTCGTTGGAAACATTGTGCATGATGAAATCCTACTGGAACTTCGC CGTAAAGCCAAGACCACAGGCAAAAGTCGAGAACAAAACAATGGTGAACGTAATGAGGAATATTATGGCATCCCA TATGGGCTGCTCTATAGATATATCTCGTATCCAAATTACTTCTGCGAGTGGATCGAATGGATCGGATTTGCTCTT TGTGCTGGACCTTTGCCCTTCCAACCCTCCTCGCTATCGCTTTCAACAATTATTGCAACGTTCTCGCCGGTTCAG CTGTTTTCGACCATCAAGAATGTTATTAACGAGCCCGCTGCCAACTTTGCGCCGAGCCTATCCCCTCCGTGGATT TTTGTTTTGAGCGAGATTGTGTTGATGCTTCCTCGCGCGTATAAGGGGCATCTTTGGTACAAGTCAAAGTTTGGT GATAGCTACCCTAGAGAGAGGAAAGCTGTTGTACCGTTCGTTTTGTGA |