Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|103830
Gene name
Locationscaffold_07:1590247..1592442
Strand-
Gene length (bp)2195
Transcript length (bp)1776
Coding sequence length (bp)1776
Protein length (aa) 592

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08646 Rep_fac-A_C Replication factor-A C terminal domain 3.0E-44 438 581
PF16900 REPA_OB_2 Replication protein A OB domain 1.2E-32 278 374
PF04057 Rep-A_N Replication factor-A protein 1, N-terminal domain 1.3E-17 22 107
PF01336 tRNA_anti-codon OB-fold nucleic acid binding domain 1.4E-09 170 252

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb1 PE=1 SV=1 5 587 9.0E-157
sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1 5 581 2.0E-125
sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2 30 587 5.0E-123
sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1 30 587 8.0E-121
sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1 5 586 1.0E-119
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Swissprot ID Swissprot Description Start End E-value
sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb1 PE=1 SV=1 5 587 9.0E-157
sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1 5 581 2.0E-125
sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2 30 587 5.0E-123
sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1 30 587 8.0E-121
sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1 5 586 1.0E-119
sp|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1 31 585 2.0E-117
sp|Q5FW17|RFA1_XENTR Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1 31 585 5.0E-116
sp|Q8VEE4|RFA1_MOUSE Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=1 SV=1 30 575 9.0E-116
sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1 30 585 2.0E-115
sp|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1 30 586 2.0E-103
sp|Q9SKI4|RFA1A_ARATH Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana GN=RPA1A PE=1 SV=1 21 585 1.0E-88
sp|Q6YZ49|RFA1A_ORYSJ Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica GN=RPA1A PE=1 SV=1 30 585 2.0E-86
sp|Q9FHJ6|RFA1C_ARATH Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana GN=RPA1C PE=3 SV=1 108 585 6.0E-76
sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 69 581 3.0E-74
sp|F4JSG3|RFA1E_ARATH Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana GN=RPA1E PE=2 SV=1 158 581 1.0E-73
sp|Q9SD82|RFA1B_ARATH Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana GN=RPA1B PE=3 SV=1 19 581 3.0E-68
sp|Q10Q08|RFA1B_ORYSJ Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica GN=RPA1B PE=1 SV=1 14 581 5.0E-68
sp|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit OS=Crithidia fasciculata GN=RPA1 PE=1 SV=1 159 522 4.0E-65
sp|Q9FME0|RFA1D_ARATH Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana GN=RPA1D PE=2 SV=1 28 581 4.0E-65
sp|O97472|RFA1_CAEBR Probable replication factor A 73 kDa subunit OS=Caenorhabditis briggsae GN=rpa-1 PE=3 SV=1 112 585 2.0E-47
sp|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit OS=Caenorhabditis elegans GN=rpa-1 PE=1 SV=1 112 585 3.0E-47
sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 31 135 7.0E-08
sp|F4JSG3|RFA1E_ARATH Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana GN=RPA1E PE=2 SV=1 30 117 1.0E-06
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GO

GO Term Description Terminal node
GO:0005634 nucleus Yes
GO:0003677 DNA binding Yes
GO:0006260 DNA replication Yes
GO:0003676 nucleic acid binding Yes
GO:0090304 nucleic acid metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0044238 primary metabolic process No
GO:0005488 binding No
GO:0043227 membrane-bounded organelle No
GO:0043231 intracellular membrane-bounded organelle No
GO:0006807 nitrogen compound metabolic process No
GO:0005575 cellular_component No
GO:0046483 heterocycle metabolic process No
GO:0008152 metabolic process No
GO:0003674 molecular_function No
GO:0043229 intracellular organelle No
GO:0006725 cellular aromatic compound metabolic process No
GO:0006259 DNA metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0043226 organelle No
GO:0009987 cellular process No
GO:0071704 organic substance metabolic process No
GO:0044237 cellular metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0043170 macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0110165 cellular anatomical entity No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0008150 biological_process No

Deeploc

Deeploc data not available for this genome

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID5
Orthogroup6777
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|103830
Agaricus bisporus var bisporus H97 AgabiH97|103830
Agaricus bisporus var burnettii H119p4 Agabi119p4|103830 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|103830
MNEYRLSVGCCEDMQNASNIDDDVFLREHVVQFLSVKKVNATGGAGDRYRLIISDGKYYIQAMLATQCNSLVETD
QIKKFSVAAIERASSNTVQGKRLVIVLSLRILGYPNEKINNPQALDPVNSGPDQNASAEAPPAPAPGGSRQVNKP
NTSGVATFPIENLSPYQNNWTIKARVTQKSDIKNWSNSRGEGKLFSVTLMDDSGEIKATAFNSVVDELFPRLEDS
KVYYISKARVNFAKKKFSNVTNDYELTLERSTQITECHETTGLPEMRYTFVGLEKLENLNKDAICDVIGVLKDIS
AVSEITARTTNRSFQKRELTLVDKSGCSIQLTLWGKQAESFTGEPGSIGAFKGVKVGDFGGVSLSTTPSTHIQLD
PHIQDCYTLRGWWDSQGSDMSFQSKTVIGGGGGLGIAFNRAQVRSLNEIKEAEVGMGDKADTFCCQGTIVHIRDQ
NLLYPACPGNNCNKKMSMSGDTWVCDKCGTNAETPEYRYILSMAVADWSGQAWLQGFNEAAVIVFGMSGNELYDL
KMRDEDKYNAVIHKAHCQTYNFACRAKKDSYEDRVRIRYGISRIEKVDYHAETQYLRDLLRSPWAA*
Coding >Agabi119p4|103830
ATGAACGAGTACAGGCTCTCCGTTGGCTGTTGCGAGGACATGCAAAATGCCTCCAACATCGACGACGACGTCTTT
CTCAGAGAGCACGTCGTTCAGTTTCTTTCCGTCAAGAAAGTCAATGCAACTGGTGGTGCCGGCGATCGCTACCGT
CTGATTATCTCAGATGGAAAATATTACATCCAAGCTATGCTGGCTACCCAGTGCAACTCCTTGGTTGAGACCGAC
CAGATCAAAAAGTTCAGCGTTGCTGCCATCGAAAGGGCTTCGTCAAACACTGTCCAGGGGAAACGGTTGGTCATT
GTCCTCAGTTTACGCATCCTCGGATATCCGAACGAGAAAATCAACAACCCTCAGGCCCTTGATCCTGTCAACTCT
GGTCCAGACCAAAATGCGTCTGCAGAGGCACCACCAGCTCCAGCTCCGGGCGGCAGCCGTCAGGTAAACAAGCCA
AATACCTCTGGCGTGGCAACTTTCCCGATCGAAAACTTGAGCCCGTATCAGAACAACTGGACCATCAAGGCTCGA
GTTACTCAGAAAAGTGACATCAAGAACTGGTCTAATTCAAGGGGCGAAGGCAAACTCTTCAGTGTTACGCTTATG
GATGACAGTGGGGAGATCAAAGCCACTGCCTTCAATTCCGTTGTCGATGAACTCTTCCCTCGATTGGAAGACAGC
AAAGTCTATTACATCTCAAAAGCTCGCGTCAACTTCGCCAAGAAAAAATTCAGCAACGTGACGAATGATTACGAG
TTGACCCTTGAGAGGTCCACTCAGATCACAGAATGTCACGAGACAACTGGATTACCTGAAATGAGGTACACGTTT
GTTGGTCTTGAGAAGCTCGAAAACCTCAACAAAGATGCAATCTGCGATGTCATTGGCGTACTCAAAGATATCAGC
GCCGTTTCTGAAATCACAGCTCGAACGACAAATCGATCTTTCCAAAAACGAGAACTTACTCTAGTTGACAAGAGC
GGTTGCTCAATACAATTAACATTATGGGGTAAACAGGCAGAGTCGTTCACGGGTGAACCGGGCTCCATTGGTGCC
TTCAAGGGCGTCAAAGTCGGTGACTTTGGGGGTGTTTCATTATCCACGACGCCCTCGACTCATATACAACTGGAT
CCTCACATCCAGGATTGTTACACCCTTCGCGGCTGGTGGGACTCTCAAGGCTCCGACATGTCTTTCCAATCCAAA
ACTGTTATTGGAGGTGGTGGTGGTCTCGGAATTGCTTTCAACCGTGCCCAAGTTCGTAGTCTGAACGAAATCAAA
GAAGCCGAGGTGGGCATGGGAGATAAGGCCGATACATTCTGTTGTCAAGGAACAATCGTTCATATCAGAGACCAA
AACCTTCTTTACCCTGCCTGCCCAGGTAACAATTGTAACAAGAAAATGAGTATGTCGGGTGATACTTGGGTGTGT
GATAAATGTGGTACGAACGCGGAGACGCCTGAATATAGATATATTCTTTCTATGGCTGTTGCCGACTGGTCTGGC
CAGGCATGGCTCCAGGGATTTAATGAAGCCGCAGTGATAGTTTTCGGTATGAGCGGAAATGAGCTCTACGATTTG
AAGATGCGGGATGAAGACAAATATAACGCCGTCATTCACAAGGCCCATTGCCAAACATATAATTTCGCATGTCGC
GCCAAGAAAGATTCATATGAAGATCGCGTTCGTATTCGATATGGTATTTCTCGGATAGAGAAAGTCGATTATCAT
GCAGAAACCCAATATCTACGAGACTTGCTTCGTAGTCCTTGGGCTGCATAG
Transcript >Agabi119p4|103830
ATGAACGAGTACAGGCTCTCCGTTGGCTGTTGCGAGGACATGCAAAATGCCTCCAACATCGACGACGACGTCTTT
CTCAGAGAGCACGTCGTTCAGTTTCTTTCCGTCAAGAAAGTCAATGCAACTGGTGGTGCCGGCGATCGCTACCGT
CTGATTATCTCAGATGGAAAATATTACATCCAAGCTATGCTGGCTACCCAGTGCAACTCCTTGGTTGAGACCGAC
CAGATCAAAAAGTTCAGCGTTGCTGCCATCGAAAGGGCTTCGTCAAACACTGTCCAGGGGAAACGGTTGGTCATT
GTCCTCAGTTTACGCATCCTCGGATATCCGAACGAGAAAATCAACAACCCTCAGGCCCTTGATCCTGTCAACTCT
GGTCCAGACCAAAATGCGTCTGCAGAGGCACCACCAGCTCCAGCTCCGGGCGGCAGCCGTCAGGTAAACAAGCCA
AATACCTCTGGCGTGGCAACTTTCCCGATCGAAAACTTGAGCCCGTATCAGAACAACTGGACCATCAAGGCTCGA
GTTACTCAGAAAAGTGACATCAAGAACTGGTCTAATTCAAGGGGCGAAGGCAAACTCTTCAGTGTTACGCTTATG
GATGACAGTGGGGAGATCAAAGCCACTGCCTTCAATTCCGTTGTCGATGAACTCTTCCCTCGATTGGAAGACAGC
AAAGTCTATTACATCTCAAAAGCTCGCGTCAACTTCGCCAAGAAAAAATTCAGCAACGTGACGAATGATTACGAG
TTGACCCTTGAGAGGTCCACTCAGATCACAGAATGTCACGAGACAACTGGATTACCTGAAATGAGGTACACGTTT
GTTGGTCTTGAGAAGCTCGAAAACCTCAACAAAGATGCAATCTGCGATGTCATTGGCGTACTCAAAGATATCAGC
GCCGTTTCTGAAATCACAGCTCGAACGACAAATCGATCTTTCCAAAAACGAGAACTTACTCTAGTTGACAAGAGC
GGTTGCTCAATACAATTAACATTATGGGGTAAACAGGCAGAGTCGTTCACGGGTGAACCGGGCTCCATTGGTGCC
TTCAAGGGCGTCAAAGTCGGTGACTTTGGGGGTGTTTCATTATCCACGACGCCCTCGACTCATATACAACTGGAT
CCTCACATCCAGGATTGTTACACCCTTCGCGGCTGGTGGGACTCTCAAGGCTCCGACATGTCTTTCCAATCCAAA
ACTGTTATTGGAGGTGGTGGTGGTCTCGGAATTGCTTTCAACCGTGCCCAAGTTCGTAGTCTGAACGAAATCAAA
GAAGCCGAGGTGGGCATGGGAGATAAGGCCGATACATTCTGTTGTCAAGGAACAATCGTTCATATCAGAGACCAA
AACCTTCTTTACCCTGCCTGCCCAGGTAACAATTGTAACAAGAAAATGAGTATGTCGGGTGATACTTGGGTGTGT
GATAAATGTGGTACGAACGCGGAGACGCCTGAATATAGATATATTCTTTCTATGGCTGTTGCCGACTGGTCTGGC
CAGGCATGGCTCCAGGGATTTAATGAAGCCGCAGTGATAGTTTTCGGTATGAGCGGAAATGAGCTCTACGATTTG
AAGATGCGGGATGAAGACAAATATAACGCCGTCATTCACAAGGCCCATTGCCAAACATATAATTTCGCATGTCGC
GCCAAGAAAGATTCATATGAAGATCGCGTTCGTATTCGATATGGTATTTCTCGGATAGAGAAAGTCGATTATCAT
GCAGAAACCCAATATCTACGAGACTTGCTTCGTAGTCCTTGGGCTGCATAG
Gene >Agabi119p4|103830
ATGAACGAGTACAGGCTCTCCGTTGGCTGTTGCGAGGACATGCAAAATGCCTCCAACATCGACGACGACGTCTTT
CTCAGAGAGCACGTCGTTCAGTTTCTTTCCGTCAAGAAAGTCAATGCAACTGGTGGTGCCGGCGATCGCTACCGT
CTGATTATCTCAGATGGAAAATATTACATCCAAGCTATGCTGGCTACCCAGTGCAACTCCTTGGTTGAGACCGAC
CAGATCAAAAAGTTCAGCGTTGCTGCCATCGAAAGGGCTTCGTCAAACACTGTCCAGGGGAAACGGTATAGTCTT
CTGTGCCTTATTTGAAGCACCGGGATTCACCATCAATAGGTTGGTCATTGTCCTCAGTTTACGCATCCTCGGATA
TCCGAACGAGAAAATCAACAACCCTCAGGCCCTTGATCCTGTCAACTCTGGTCCAGACCAAAATGCGTCTGCAGA
GGCACCACCAGCTCCAGCTCCGGGCGGCAGCCGTCAGGTAAACAAGCCAAATACCTCTGGCGTGGCAACTTTCCC
GATCGAAAACTTGAGCCCGTATCAGAACAACTGGACCATCAAGGCTCGAGTTACTCAGAAAAGTGACATCAAGAA
CTGGTCTAATTCAAGGGGCGAAGGCAAACTCTTCAGTGTTACGCTTATGGATGACAGTGGGGAGATCAAAGCCAC
TGCCTTCAATTCCGTTGTCGATGAACTCTTCCCTCGATTGGAAGACAGCAAAGTCTATTACATCTCAAAAGCTCG
CGTCAACTTCGCCAAGAAAAAATTCAGCAACGTGACGAATGATTACGAGTTGACCCTTGAGAGGTCCACTCAGAT
CACAGAAGTGAGCCTCCCTATCACCGGAATAGCTTGTATTAGATAGCTGATGCATGGTCAGTGTCACGAGACAAC
TGGATTACCTGAAATGAGGTACACGTTTGTTGGTCTTGAGAAGCTCGAAAACCTCAACAAAGATGCAATCTGCGG
TGCGACGCTTCATTACTCCCATTGGATATCTCTCATAGCCTATTTAGATGTCATTGGCGTACTCAAAGATATCAG
CGCCGTTTCTGAAATCACAGCTCGAACGACAAATCGATCTGTGAGTAGGTTGGTCTTCAGTATAAGGCGTAAACA
CTGAAAAGGGAACAGTTCCAAAAACGAGAACTTACTCTAGTTGACAAGAGCGGTTGCTCAATACAATTAACATTA
TGGGGTAAACAGGCAGAGTCGTTCACGGGTGAACCGGGCTCCATTGGTGCCTTCAAGGGCGTCAAAGTCGGTGAC
TTTGGGGGTGAGTTATCAACCTCTCGAGCAAATATGTATCGCTCATTTAATCAGGTGTTTCATTATCCACGACGC
CCTCGACTCATATACAACTGGATCCTCACATCCAGGATTGTTACACCCTTCGCGGCTGGTGGGACTCTCAAGGCT
CCGACATGTCTTTCCAATCCAAAACTGTTATTGGAGGTGGTGGTGGTCTCGGAATTGCTTTCAACCGTGCCCAAG
TTCGTAGTCTGAACGAAATCAAAGAAGCCGAGGTGGGCATGGGAGATAAGGCCGATACATTCTGTTGTCAAGGAA
CAATCGTTCATATCAGAGACCAAAACCTTCTTTACCCTGCCTGCCCAGGTAACAATTGTAACAAGAAAATGAGTA
TGTCGGGTGATACTTGGGTGTGTGATAAATGTGGTACGAACGCGGAGACGCCTGAATATAGGTAAGCACTACTTC
TCAACACATCTCAGGAGTGGATACTCATGAAATGAATAGATATATTCTTTCTATGGCTGTTGCCGACTGGTCTGG
CCAGGCATGGCTCCAGGGATTTAATGAAGCCGCAGTGATAGTTTTCGGTATGAGCGGAAATGAGCTCTACGATTT
GAAGGTATGAGTCATCTCGTATAGGATTGATTACCTTGGACGAACTCATCGTGATGCACAGATGCGGGATGAAGA
CAAATATAACGCCGTCATTCACAAGGCCCATTGCCAAACATATAATTTCGCATGTCGCGCCAAGAAAGATTCATA
TGAAGTGCGCAAAGATATTTACTCCTTTAAAGCGAGAGTCCTGACTTCTTTTCCCCTCCCAATAGGATCGCGTTC
GTATTCGATATGGTATTTCTCGGATAGAGAAAGTCGATTATCATGCAGAAACCCAATATCTACGAGACTTGCTTC
GTAGTCCTTGGGCTGCATAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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