© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|103830 |
| Gene name | |
| Location | scaffold_07:1590247..1592442 |
| Strand | - |
| Gene length (bp) | 2195 |
| Transcript length (bp) | 1776 |
| Coding sequence length (bp) | 1776 |
| Protein length (aa) | 592 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08646 | Rep_fac-A_C | Replication factor-A C terminal domain | 3.0E-44 | 438 | 581 |
| PF16900 | REPA_OB_2 | Replication protein A OB domain | 1.2E-32 | 278 | 374 |
| PF04057 | Rep-A_N | Replication factor-A protein 1, N-terminal domain | 1.3E-17 | 22 | 107 |
| PF01336 | tRNA_anti-codon | OB-fold nucleic acid binding domain | 1.4E-09 | 170 | 252 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q92372|RFA1_SCHPO | Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb1 PE=1 SV=1 | 5 | 587 | 9.0E-157 |
| sp|Q6NY74|RFA1_DANRE | Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1 | 5 | 581 | 2.0E-125 |
| sp|P27694|RFA1_HUMAN | Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2 | 30 | 587 | 5.0E-123 |
| sp|Q5R7Q4|RFA1_PONAB | Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1 | 30 | 587 | 8.0E-121 |
| sp|Q5ZJJ2|RFA1_CHICK | Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1 | 5 | 586 | 1.0E-119 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q92372|RFA1_SCHPO | Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb1 PE=1 SV=1 | 5 | 587 | 9.0E-157 |
| sp|Q6NY74|RFA1_DANRE | Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1 | 5 | 581 | 2.0E-125 |
| sp|P27694|RFA1_HUMAN | Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2 | 30 | 587 | 5.0E-123 |
| sp|Q5R7Q4|RFA1_PONAB | Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1 | 30 | 587 | 8.0E-121 |
| sp|Q5ZJJ2|RFA1_CHICK | Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1 | 5 | 586 | 1.0E-119 |
| sp|Q01588|RFA1_XENLA | Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1 | 31 | 585 | 2.0E-117 |
| sp|Q5FW17|RFA1_XENTR | Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1 | 31 | 585 | 5.0E-116 |
| sp|Q8VEE4|RFA1_MOUSE | Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=1 SV=1 | 30 | 575 | 9.0E-116 |
| sp|P22336|RFA1_YEAST | Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1 | 30 | 585 | 2.0E-115 |
| sp|Q24492|RFA1_DROME | Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1 | 30 | 586 | 2.0E-103 |
| sp|Q9SKI4|RFA1A_ARATH | Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana GN=RPA1A PE=1 SV=1 | 21 | 585 | 1.0E-88 |
| sp|Q6YZ49|RFA1A_ORYSJ | Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica GN=RPA1A PE=1 SV=1 | 30 | 585 | 2.0E-86 |
| sp|Q9FHJ6|RFA1C_ARATH | Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana GN=RPA1C PE=3 SV=1 | 108 | 585 | 6.0E-76 |
| sp|Q65XV7|RFA1C_ORYSJ | Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 | 69 | 581 | 3.0E-74 |
| sp|F4JSG3|RFA1E_ARATH | Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana GN=RPA1E PE=2 SV=1 | 158 | 581 | 1.0E-73 |
| sp|Q9SD82|RFA1B_ARATH | Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana GN=RPA1B PE=3 SV=1 | 19 | 581 | 3.0E-68 |
| sp|Q10Q08|RFA1B_ORYSJ | Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica GN=RPA1B PE=1 SV=1 | 14 | 581 | 5.0E-68 |
| sp|Q23696|RFA1_CRIFA | Replication factor A 51 kDa subunit OS=Crithidia fasciculata GN=RPA1 PE=1 SV=1 | 159 | 522 | 4.0E-65 |
| sp|Q9FME0|RFA1D_ARATH | Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana GN=RPA1D PE=2 SV=1 | 28 | 581 | 4.0E-65 |
| sp|O97472|RFA1_CAEBR | Probable replication factor A 73 kDa subunit OS=Caenorhabditis briggsae GN=rpa-1 PE=3 SV=1 | 112 | 585 | 2.0E-47 |
| sp|Q19537|RFA1_CAEEL | Probable replication factor A 73 kDa subunit OS=Caenorhabditis elegans GN=rpa-1 PE=1 SV=1 | 112 | 585 | 3.0E-47 |
| sp|Q65XV7|RFA1C_ORYSJ | Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 | 31 | 135 | 7.0E-08 |
| sp|F4JSG3|RFA1E_ARATH | Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana GN=RPA1E PE=2 SV=1 | 30 | 117 | 1.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005634 | nucleus | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0006260 | DNA replication | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0005488 | binding | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0043229 | intracellular organelle | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0043226 | organelle | No |
| GO:0009987 | cellular process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|103830 MNEYRLSVGCCEDMQNASNIDDDVFLREHVVQFLSVKKVNATGGAGDRYRLIISDGKYYIQAMLATQCNSLVETD QIKKFSVAAIERASSNTVQGKRLVIVLSLRILGYPNEKINNPQALDPVNSGPDQNASAEAPPAPAPGGSRQVNKP NTSGVATFPIENLSPYQNNWTIKARVTQKSDIKNWSNSRGEGKLFSVTLMDDSGEIKATAFNSVVDELFPRLEDS KVYYISKARVNFAKKKFSNVTNDYELTLERSTQITECHETTGLPEMRYTFVGLEKLENLNKDAICDVIGVLKDIS AVSEITARTTNRSFQKRELTLVDKSGCSIQLTLWGKQAESFTGEPGSIGAFKGVKVGDFGGVSLSTTPSTHIQLD PHIQDCYTLRGWWDSQGSDMSFQSKTVIGGGGGLGIAFNRAQVRSLNEIKEAEVGMGDKADTFCCQGTIVHIRDQ NLLYPACPGNNCNKKMSMSGDTWVCDKCGTNAETPEYRYILSMAVADWSGQAWLQGFNEAAVIVFGMSGNELYDL KMRDEDKYNAVIHKAHCQTYNFACRAKKDSYEDRVRIRYGISRIEKVDYHAETQYLRDLLRSPWAA* |
| Coding | >Agabi119p4|103830 ATGAACGAGTACAGGCTCTCCGTTGGCTGTTGCGAGGACATGCAAAATGCCTCCAACATCGACGACGACGTCTTT CTCAGAGAGCACGTCGTTCAGTTTCTTTCCGTCAAGAAAGTCAATGCAACTGGTGGTGCCGGCGATCGCTACCGT CTGATTATCTCAGATGGAAAATATTACATCCAAGCTATGCTGGCTACCCAGTGCAACTCCTTGGTTGAGACCGAC CAGATCAAAAAGTTCAGCGTTGCTGCCATCGAAAGGGCTTCGTCAAACACTGTCCAGGGGAAACGGTTGGTCATT GTCCTCAGTTTACGCATCCTCGGATATCCGAACGAGAAAATCAACAACCCTCAGGCCCTTGATCCTGTCAACTCT GGTCCAGACCAAAATGCGTCTGCAGAGGCACCACCAGCTCCAGCTCCGGGCGGCAGCCGTCAGGTAAACAAGCCA AATACCTCTGGCGTGGCAACTTTCCCGATCGAAAACTTGAGCCCGTATCAGAACAACTGGACCATCAAGGCTCGA GTTACTCAGAAAAGTGACATCAAGAACTGGTCTAATTCAAGGGGCGAAGGCAAACTCTTCAGTGTTACGCTTATG GATGACAGTGGGGAGATCAAAGCCACTGCCTTCAATTCCGTTGTCGATGAACTCTTCCCTCGATTGGAAGACAGC AAAGTCTATTACATCTCAAAAGCTCGCGTCAACTTCGCCAAGAAAAAATTCAGCAACGTGACGAATGATTACGAG TTGACCCTTGAGAGGTCCACTCAGATCACAGAATGTCACGAGACAACTGGATTACCTGAAATGAGGTACACGTTT GTTGGTCTTGAGAAGCTCGAAAACCTCAACAAAGATGCAATCTGCGATGTCATTGGCGTACTCAAAGATATCAGC GCCGTTTCTGAAATCACAGCTCGAACGACAAATCGATCTTTCCAAAAACGAGAACTTACTCTAGTTGACAAGAGC GGTTGCTCAATACAATTAACATTATGGGGTAAACAGGCAGAGTCGTTCACGGGTGAACCGGGCTCCATTGGTGCC TTCAAGGGCGTCAAAGTCGGTGACTTTGGGGGTGTTTCATTATCCACGACGCCCTCGACTCATATACAACTGGAT CCTCACATCCAGGATTGTTACACCCTTCGCGGCTGGTGGGACTCTCAAGGCTCCGACATGTCTTTCCAATCCAAA ACTGTTATTGGAGGTGGTGGTGGTCTCGGAATTGCTTTCAACCGTGCCCAAGTTCGTAGTCTGAACGAAATCAAA GAAGCCGAGGTGGGCATGGGAGATAAGGCCGATACATTCTGTTGTCAAGGAACAATCGTTCATATCAGAGACCAA AACCTTCTTTACCCTGCCTGCCCAGGTAACAATTGTAACAAGAAAATGAGTATGTCGGGTGATACTTGGGTGTGT GATAAATGTGGTACGAACGCGGAGACGCCTGAATATAGATATATTCTTTCTATGGCTGTTGCCGACTGGTCTGGC CAGGCATGGCTCCAGGGATTTAATGAAGCCGCAGTGATAGTTTTCGGTATGAGCGGAAATGAGCTCTACGATTTG AAGATGCGGGATGAAGACAAATATAACGCCGTCATTCACAAGGCCCATTGCCAAACATATAATTTCGCATGTCGC GCCAAGAAAGATTCATATGAAGATCGCGTTCGTATTCGATATGGTATTTCTCGGATAGAGAAAGTCGATTATCAT GCAGAAACCCAATATCTACGAGACTTGCTTCGTAGTCCTTGGGCTGCATAG |
| Transcript | >Agabi119p4|103830 ATGAACGAGTACAGGCTCTCCGTTGGCTGTTGCGAGGACATGCAAAATGCCTCCAACATCGACGACGACGTCTTT CTCAGAGAGCACGTCGTTCAGTTTCTTTCCGTCAAGAAAGTCAATGCAACTGGTGGTGCCGGCGATCGCTACCGT CTGATTATCTCAGATGGAAAATATTACATCCAAGCTATGCTGGCTACCCAGTGCAACTCCTTGGTTGAGACCGAC CAGATCAAAAAGTTCAGCGTTGCTGCCATCGAAAGGGCTTCGTCAAACACTGTCCAGGGGAAACGGTTGGTCATT GTCCTCAGTTTACGCATCCTCGGATATCCGAACGAGAAAATCAACAACCCTCAGGCCCTTGATCCTGTCAACTCT GGTCCAGACCAAAATGCGTCTGCAGAGGCACCACCAGCTCCAGCTCCGGGCGGCAGCCGTCAGGTAAACAAGCCA AATACCTCTGGCGTGGCAACTTTCCCGATCGAAAACTTGAGCCCGTATCAGAACAACTGGACCATCAAGGCTCGA GTTACTCAGAAAAGTGACATCAAGAACTGGTCTAATTCAAGGGGCGAAGGCAAACTCTTCAGTGTTACGCTTATG GATGACAGTGGGGAGATCAAAGCCACTGCCTTCAATTCCGTTGTCGATGAACTCTTCCCTCGATTGGAAGACAGC AAAGTCTATTACATCTCAAAAGCTCGCGTCAACTTCGCCAAGAAAAAATTCAGCAACGTGACGAATGATTACGAG TTGACCCTTGAGAGGTCCACTCAGATCACAGAATGTCACGAGACAACTGGATTACCTGAAATGAGGTACACGTTT GTTGGTCTTGAGAAGCTCGAAAACCTCAACAAAGATGCAATCTGCGATGTCATTGGCGTACTCAAAGATATCAGC GCCGTTTCTGAAATCACAGCTCGAACGACAAATCGATCTTTCCAAAAACGAGAACTTACTCTAGTTGACAAGAGC GGTTGCTCAATACAATTAACATTATGGGGTAAACAGGCAGAGTCGTTCACGGGTGAACCGGGCTCCATTGGTGCC TTCAAGGGCGTCAAAGTCGGTGACTTTGGGGGTGTTTCATTATCCACGACGCCCTCGACTCATATACAACTGGAT CCTCACATCCAGGATTGTTACACCCTTCGCGGCTGGTGGGACTCTCAAGGCTCCGACATGTCTTTCCAATCCAAA ACTGTTATTGGAGGTGGTGGTGGTCTCGGAATTGCTTTCAACCGTGCCCAAGTTCGTAGTCTGAACGAAATCAAA GAAGCCGAGGTGGGCATGGGAGATAAGGCCGATACATTCTGTTGTCAAGGAACAATCGTTCATATCAGAGACCAA AACCTTCTTTACCCTGCCTGCCCAGGTAACAATTGTAACAAGAAAATGAGTATGTCGGGTGATACTTGGGTGTGT GATAAATGTGGTACGAACGCGGAGACGCCTGAATATAGATATATTCTTTCTATGGCTGTTGCCGACTGGTCTGGC CAGGCATGGCTCCAGGGATTTAATGAAGCCGCAGTGATAGTTTTCGGTATGAGCGGAAATGAGCTCTACGATTTG AAGATGCGGGATGAAGACAAATATAACGCCGTCATTCACAAGGCCCATTGCCAAACATATAATTTCGCATGTCGC GCCAAGAAAGATTCATATGAAGATCGCGTTCGTATTCGATATGGTATTTCTCGGATAGAGAAAGTCGATTATCAT GCAGAAACCCAATATCTACGAGACTTGCTTCGTAGTCCTTGGGCTGCATAG |
| Gene | >Agabi119p4|103830 ATGAACGAGTACAGGCTCTCCGTTGGCTGTTGCGAGGACATGCAAAATGCCTCCAACATCGACGACGACGTCTTT CTCAGAGAGCACGTCGTTCAGTTTCTTTCCGTCAAGAAAGTCAATGCAACTGGTGGTGCCGGCGATCGCTACCGT CTGATTATCTCAGATGGAAAATATTACATCCAAGCTATGCTGGCTACCCAGTGCAACTCCTTGGTTGAGACCGAC CAGATCAAAAAGTTCAGCGTTGCTGCCATCGAAAGGGCTTCGTCAAACACTGTCCAGGGGAAACGGTATAGTCTT CTGTGCCTTATTTGAAGCACCGGGATTCACCATCAATAGGTTGGTCATTGTCCTCAGTTTACGCATCCTCGGATA TCCGAACGAGAAAATCAACAACCCTCAGGCCCTTGATCCTGTCAACTCTGGTCCAGACCAAAATGCGTCTGCAGA GGCACCACCAGCTCCAGCTCCGGGCGGCAGCCGTCAGGTAAACAAGCCAAATACCTCTGGCGTGGCAACTTTCCC GATCGAAAACTTGAGCCCGTATCAGAACAACTGGACCATCAAGGCTCGAGTTACTCAGAAAAGTGACATCAAGAA CTGGTCTAATTCAAGGGGCGAAGGCAAACTCTTCAGTGTTACGCTTATGGATGACAGTGGGGAGATCAAAGCCAC TGCCTTCAATTCCGTTGTCGATGAACTCTTCCCTCGATTGGAAGACAGCAAAGTCTATTACATCTCAAAAGCTCG CGTCAACTTCGCCAAGAAAAAATTCAGCAACGTGACGAATGATTACGAGTTGACCCTTGAGAGGTCCACTCAGAT CACAGAAGTGAGCCTCCCTATCACCGGAATAGCTTGTATTAGATAGCTGATGCATGGTCAGTGTCACGAGACAAC TGGATTACCTGAAATGAGGTACACGTTTGTTGGTCTTGAGAAGCTCGAAAACCTCAACAAAGATGCAATCTGCGG TGCGACGCTTCATTACTCCCATTGGATATCTCTCATAGCCTATTTAGATGTCATTGGCGTACTCAAAGATATCAG CGCCGTTTCTGAAATCACAGCTCGAACGACAAATCGATCTGTGAGTAGGTTGGTCTTCAGTATAAGGCGTAAACA CTGAAAAGGGAACAGTTCCAAAAACGAGAACTTACTCTAGTTGACAAGAGCGGTTGCTCAATACAATTAACATTA TGGGGTAAACAGGCAGAGTCGTTCACGGGTGAACCGGGCTCCATTGGTGCCTTCAAGGGCGTCAAAGTCGGTGAC TTTGGGGGTGAGTTATCAACCTCTCGAGCAAATATGTATCGCTCATTTAATCAGGTGTTTCATTATCCACGACGC CCTCGACTCATATACAACTGGATCCTCACATCCAGGATTGTTACACCCTTCGCGGCTGGTGGGACTCTCAAGGCT CCGACATGTCTTTCCAATCCAAAACTGTTATTGGAGGTGGTGGTGGTCTCGGAATTGCTTTCAACCGTGCCCAAG TTCGTAGTCTGAACGAAATCAAAGAAGCCGAGGTGGGCATGGGAGATAAGGCCGATACATTCTGTTGTCAAGGAA CAATCGTTCATATCAGAGACCAAAACCTTCTTTACCCTGCCTGCCCAGGTAACAATTGTAACAAGAAAATGAGTA TGTCGGGTGATACTTGGGTGTGTGATAAATGTGGTACGAACGCGGAGACGCCTGAATATAGGTAAGCACTACTTC TCAACACATCTCAGGAGTGGATACTCATGAAATGAATAGATATATTCTTTCTATGGCTGTTGCCGACTGGTCTGG CCAGGCATGGCTCCAGGGATTTAATGAAGCCGCAGTGATAGTTTTCGGTATGAGCGGAAATGAGCTCTACGATTT GAAGGTATGAGTCATCTCGTATAGGATTGATTACCTTGGACGAACTCATCGTGATGCACAGATGCGGGATGAAGA CAAATATAACGCCGTCATTCACAAGGCCCATTGCCAAACATATAATTTCGCATGTCGCGCCAAGAAAGATTCATA TGAAGTGCGCAAAGATATTTACTCCTTTAAAGCGAGAGTCCTGACTTCTTTTCCCCTCCCAATAGGATCGCGTTC GTATTCGATATGGTATTTCTCGGATAGAGAAAGTCGATTATCATGCAGAAACCCAATATCTACGAGACTTGCTTC GTAGTCCTTGGGCTGCATAG |