Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|103830
Gene name
Locationscaffold_07:1590247..1592442
Strand-
Gene length (bp)2195
Transcript length (bp)1776
Coding sequence length (bp)1776
Protein length (aa) 592

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08646 Rep_fac-A_C Replication factor-A C terminal domain 3.0E-44 438 581
PF16900 REPA_OB_2 Replication protein A OB domain 1.2E-32 278 374
PF04057 Rep-A_N Replication factor-A protein 1, N-terminal domain 1.3E-17 22 107
PF01336 tRNA_anti-codon OB-fold nucleic acid binding domain 1.4E-09 170 252

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb1 PE=1 SV=1 5 587 9.0E-157
sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1 5 581 2.0E-125
sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2 30 587 5.0E-123
sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1 30 587 8.0E-121
sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1 5 586 1.0E-119
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Swissprot ID Swissprot Description Start End E-value
sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssb1 PE=1 SV=1 5 587 9.0E-157
sp|Q6NY74|RFA1_DANRE Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1 5 581 2.0E-125
sp|P27694|RFA1_HUMAN Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2 30 587 5.0E-123
sp|Q5R7Q4|RFA1_PONAB Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1 30 587 8.0E-121
sp|Q5ZJJ2|RFA1_CHICK Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1 5 586 1.0E-119
sp|Q01588|RFA1_XENLA Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1 31 585 2.0E-117
sp|Q5FW17|RFA1_XENTR Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1 31 585 5.0E-116
sp|Q8VEE4|RFA1_MOUSE Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=1 SV=1 30 575 9.0E-116
sp|P22336|RFA1_YEAST Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFA1 PE=1 SV=1 30 585 2.0E-115
sp|Q24492|RFA1_DROME Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1 30 586 2.0E-103
sp|Q9SKI4|RFA1A_ARATH Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana GN=RPA1A PE=1 SV=1 21 585 1.0E-88
sp|Q6YZ49|RFA1A_ORYSJ Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica GN=RPA1A PE=1 SV=1 30 585 2.0E-86
sp|Q9FHJ6|RFA1C_ARATH Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana GN=RPA1C PE=3 SV=1 108 585 6.0E-76
sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 69 581 3.0E-74
sp|F4JSG3|RFA1E_ARATH Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana GN=RPA1E PE=2 SV=1 158 581 1.0E-73
sp|Q9SD82|RFA1B_ARATH Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana GN=RPA1B PE=3 SV=1 19 581 3.0E-68
sp|Q10Q08|RFA1B_ORYSJ Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica GN=RPA1B PE=1 SV=1 14 581 5.0E-68
sp|Q23696|RFA1_CRIFA Replication factor A 51 kDa subunit OS=Crithidia fasciculata GN=RPA1 PE=1 SV=1 159 522 4.0E-65
sp|Q9FME0|RFA1D_ARATH Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana GN=RPA1D PE=2 SV=1 28 581 4.0E-65
sp|O97472|RFA1_CAEBR Probable replication factor A 73 kDa subunit OS=Caenorhabditis briggsae GN=rpa-1 PE=3 SV=1 112 585 2.0E-47
sp|Q19537|RFA1_CAEEL Probable replication factor A 73 kDa subunit OS=Caenorhabditis elegans GN=rpa-1 PE=1 SV=1 112 585 3.0E-47
sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1 31 135 7.0E-08
sp|F4JSG3|RFA1E_ARATH Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana GN=RPA1E PE=2 SV=1 30 117 1.0E-06
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GO

GO Term Description Terminal node
GO:0005634 nucleus Yes
GO:0003677 DNA binding Yes
GO:0006260 DNA replication Yes
GO:0003676 nucleic acid binding Yes
GO:0090304 nucleic acid metabolic process No
GO:1901360 organic cyclic compound metabolic process No
GO:0044260 cellular macromolecule metabolic process No
GO:0044238 primary metabolic process No
GO:0005488 binding No
GO:0043227 membrane-bounded organelle No
GO:0043231 intracellular membrane-bounded organelle No
GO:0006807 nitrogen compound metabolic process No
GO:0005575 cellular_component No
GO:0046483 heterocycle metabolic process No
GO:0008152 metabolic process No
GO:0003674 molecular_function No
GO:0043229 intracellular organelle No
GO:0006725 cellular aromatic compound metabolic process No
GO:0006259 DNA metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0043226 organelle No
GO:0009987 cellular process No
GO:0071704 organic substance metabolic process No
GO:0044237 cellular metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0043170 macromolecule metabolic process No
GO:0006139 nucleobase-containing compound metabolic process No
GO:0110165 cellular anatomical entity No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0008150 biological_process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 42 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|103830
MNEYRLSVGCCEDMQNASNIDDDVFLREHVVQFLSVKKVNATGGAGDRYRLIISDGKYYIQAMLATQCNSLVETD
QIKKFSVAAIERASSNTVQGKRLVIVLSLRILGYPNEKINNPQALDPVNSGPDQNASAEAPPAPAPGGSRQVNKP
NTSGVATFPIENLSPYQNNWTIKARVTQKSDIKNWSNSRGEGKLFSVTLMDDSGEIKATAFNSVVDELFPRLEDS
KVYYISKARVNFAKKKFSNVTNDYELTLERSTQITECHETTGLPEMRYTFVGLEKLENLNKDAICDVIGVLKDIS
AVSEITARTTNRSFQKRELTLVDKSGCSIQLTLWGKQAESFTGEPGSIGAFKGVKVGDFGGVSLSTTPSTHIQLD
PHIQDCYTLRGWWDSQGSDMSFQSKTVIGGGGGLGIAFNRAQVRSLNEIKEAEVGMGDKADTFCCQGTIVHIRDQ
NLLYPACPGNNCNKKMSMSGDTWVCDKCGTNAETPEYRYILSMAVADWSGQAWLQGFNEAAVIVFGMSGNELYDL
KMRDEDKYNAVIHKAHCQTYNFACRAKKDSYEDRVRIRYGISRIEKVDYHAETQYLRDLLRSPWAA*
Coding >Agabi119p4|103830
ATGAACGAGTACAGGCTCTCCGTTGGCTGTTGCGAGGACATGCAAAATGCCTCCAACATCGACGACGACGTCTTT
CTCAGAGAGCACGTCGTTCAGTTTCTTTCCGTCAAGAAAGTCAATGCAACTGGTGGTGCCGGCGATCGCTACCGT
CTGATTATCTCAGATGGAAAATATTACATCCAAGCTATGCTGGCTACCCAGTGCAACTCCTTGGTTGAGACCGAC
CAGATCAAAAAGTTCAGCGTTGCTGCCATCGAAAGGGCTTCGTCAAACACTGTCCAGGGGAAACGGTTGGTCATT
GTCCTCAGTTTACGCATCCTCGGATATCCGAACGAGAAAATCAACAACCCTCAGGCCCTTGATCCTGTCAACTCT
GGTCCAGACCAAAATGCGTCTGCAGAGGCACCACCAGCTCCAGCTCCGGGCGGCAGCCGTCAGGTAAACAAGCCA
AATACCTCTGGCGTGGCAACTTTCCCGATCGAAAACTTGAGCCCGTATCAGAACAACTGGACCATCAAGGCTCGA
GTTACTCAGAAAAGTGACATCAAGAACTGGTCTAATTCAAGGGGCGAAGGCAAACTCTTCAGTGTTACGCTTATG
GATGACAGTGGGGAGATCAAAGCCACTGCCTTCAATTCCGTTGTCGATGAACTCTTCCCTCGATTGGAAGACAGC
AAAGTCTATTACATCTCAAAAGCTCGCGTCAACTTCGCCAAGAAAAAATTCAGCAACGTGACGAATGATTACGAG
TTGACCCTTGAGAGGTCCACTCAGATCACAGAATGTCACGAGACAACTGGATTACCTGAAATGAGGTACACGTTT
GTTGGTCTTGAGAAGCTCGAAAACCTCAACAAAGATGCAATCTGCGATGTCATTGGCGTACTCAAAGATATCAGC
GCCGTTTCTGAAATCACAGCTCGAACGACAAATCGATCTTTCCAAAAACGAGAACTTACTCTAGTTGACAAGAGC
GGTTGCTCAATACAATTAACATTATGGGGTAAACAGGCAGAGTCGTTCACGGGTGAACCGGGCTCCATTGGTGCC
TTCAAGGGCGTCAAAGTCGGTGACTTTGGGGGTGTTTCATTATCCACGACGCCCTCGACTCATATACAACTGGAT
CCTCACATCCAGGATTGTTACACCCTTCGCGGCTGGTGGGACTCTCAAGGCTCCGACATGTCTTTCCAATCCAAA
ACTGTTATTGGAGGTGGTGGTGGTCTCGGAATTGCTTTCAACCGTGCCCAAGTTCGTAGTCTGAACGAAATCAAA
GAAGCCGAGGTGGGCATGGGAGATAAGGCCGATACATTCTGTTGTCAAGGAACAATCGTTCATATCAGAGACCAA
AACCTTCTTTACCCTGCCTGCCCAGGTAACAATTGTAACAAGAAAATGAGTATGTCGGGTGATACTTGGGTGTGT
GATAAATGTGGTACGAACGCGGAGACGCCTGAATATAGATATATTCTTTCTATGGCTGTTGCCGACTGGTCTGGC
CAGGCATGGCTCCAGGGATTTAATGAAGCCGCAGTGATAGTTTTCGGTATGAGCGGAAATGAGCTCTACGATTTG
AAGATGCGGGATGAAGACAAATATAACGCCGTCATTCACAAGGCCCATTGCCAAACATATAATTTCGCATGTCGC
GCCAAGAAAGATTCATATGAAGATCGCGTTCGTATTCGATATGGTATTTCTCGGATAGAGAAAGTCGATTATCAT
GCAGAAACCCAATATCTACGAGACTTGCTTCGTAGTCCTTGGGCTGCATAG
Transcript >Agabi119p4|103830
ATGAACGAGTACAGGCTCTCCGTTGGCTGTTGCGAGGACATGCAAAATGCCTCCAACATCGACGACGACGTCTTT
CTCAGAGAGCACGTCGTTCAGTTTCTTTCCGTCAAGAAAGTCAATGCAACTGGTGGTGCCGGCGATCGCTACCGT
CTGATTATCTCAGATGGAAAATATTACATCCAAGCTATGCTGGCTACCCAGTGCAACTCCTTGGTTGAGACCGAC
CAGATCAAAAAGTTCAGCGTTGCTGCCATCGAAAGGGCTTCGTCAAACACTGTCCAGGGGAAACGGTTGGTCATT
GTCCTCAGTTTACGCATCCTCGGATATCCGAACGAGAAAATCAACAACCCTCAGGCCCTTGATCCTGTCAACTCT
GGTCCAGACCAAAATGCGTCTGCAGAGGCACCACCAGCTCCAGCTCCGGGCGGCAGCCGTCAGGTAAACAAGCCA
AATACCTCTGGCGTGGCAACTTTCCCGATCGAAAACTTGAGCCCGTATCAGAACAACTGGACCATCAAGGCTCGA
GTTACTCAGAAAAGTGACATCAAGAACTGGTCTAATTCAAGGGGCGAAGGCAAACTCTTCAGTGTTACGCTTATG
GATGACAGTGGGGAGATCAAAGCCACTGCCTTCAATTCCGTTGTCGATGAACTCTTCCCTCGATTGGAAGACAGC
AAAGTCTATTACATCTCAAAAGCTCGCGTCAACTTCGCCAAGAAAAAATTCAGCAACGTGACGAATGATTACGAG
TTGACCCTTGAGAGGTCCACTCAGATCACAGAATGTCACGAGACAACTGGATTACCTGAAATGAGGTACACGTTT
GTTGGTCTTGAGAAGCTCGAAAACCTCAACAAAGATGCAATCTGCGATGTCATTGGCGTACTCAAAGATATCAGC
GCCGTTTCTGAAATCACAGCTCGAACGACAAATCGATCTTTCCAAAAACGAGAACTTACTCTAGTTGACAAGAGC
GGTTGCTCAATACAATTAACATTATGGGGTAAACAGGCAGAGTCGTTCACGGGTGAACCGGGCTCCATTGGTGCC
TTCAAGGGCGTCAAAGTCGGTGACTTTGGGGGTGTTTCATTATCCACGACGCCCTCGACTCATATACAACTGGAT
CCTCACATCCAGGATTGTTACACCCTTCGCGGCTGGTGGGACTCTCAAGGCTCCGACATGTCTTTCCAATCCAAA
ACTGTTATTGGAGGTGGTGGTGGTCTCGGAATTGCTTTCAACCGTGCCCAAGTTCGTAGTCTGAACGAAATCAAA
GAAGCCGAGGTGGGCATGGGAGATAAGGCCGATACATTCTGTTGTCAAGGAACAATCGTTCATATCAGAGACCAA
AACCTTCTTTACCCTGCCTGCCCAGGTAACAATTGTAACAAGAAAATGAGTATGTCGGGTGATACTTGGGTGTGT
GATAAATGTGGTACGAACGCGGAGACGCCTGAATATAGATATATTCTTTCTATGGCTGTTGCCGACTGGTCTGGC
CAGGCATGGCTCCAGGGATTTAATGAAGCCGCAGTGATAGTTTTCGGTATGAGCGGAAATGAGCTCTACGATTTG
AAGATGCGGGATGAAGACAAATATAACGCCGTCATTCACAAGGCCCATTGCCAAACATATAATTTCGCATGTCGC
GCCAAGAAAGATTCATATGAAGATCGCGTTCGTATTCGATATGGTATTTCTCGGATAGAGAAAGTCGATTATCAT
GCAGAAACCCAATATCTACGAGACTTGCTTCGTAGTCCTTGGGCTGCATAG
Gene >Agabi119p4|103830
ATGAACGAGTACAGGCTCTCCGTTGGCTGTTGCGAGGACATGCAAAATGCCTCCAACATCGACGACGACGTCTTT
CTCAGAGAGCACGTCGTTCAGTTTCTTTCCGTCAAGAAAGTCAATGCAACTGGTGGTGCCGGCGATCGCTACCGT
CTGATTATCTCAGATGGAAAATATTACATCCAAGCTATGCTGGCTACCCAGTGCAACTCCTTGGTTGAGACCGAC
CAGATCAAAAAGTTCAGCGTTGCTGCCATCGAAAGGGCTTCGTCAAACACTGTCCAGGGGAAACGGTATAGTCTT
CTGTGCCTTATTTGAAGCACCGGGATTCACCATCAATAGGTTGGTCATTGTCCTCAGTTTACGCATCCTCGGATA
TCCGAACGAGAAAATCAACAACCCTCAGGCCCTTGATCCTGTCAACTCTGGTCCAGACCAAAATGCGTCTGCAGA
GGCACCACCAGCTCCAGCTCCGGGCGGCAGCCGTCAGGTAAACAAGCCAAATACCTCTGGCGTGGCAACTTTCCC
GATCGAAAACTTGAGCCCGTATCAGAACAACTGGACCATCAAGGCTCGAGTTACTCAGAAAAGTGACATCAAGAA
CTGGTCTAATTCAAGGGGCGAAGGCAAACTCTTCAGTGTTACGCTTATGGATGACAGTGGGGAGATCAAAGCCAC
TGCCTTCAATTCCGTTGTCGATGAACTCTTCCCTCGATTGGAAGACAGCAAAGTCTATTACATCTCAAAAGCTCG
CGTCAACTTCGCCAAGAAAAAATTCAGCAACGTGACGAATGATTACGAGTTGACCCTTGAGAGGTCCACTCAGAT
CACAGAAGTGAGCCTCCCTATCACCGGAATAGCTTGTATTAGATAGCTGATGCATGGTCAGTGTCACGAGACAAC
TGGATTACCTGAAATGAGGTACACGTTTGTTGGTCTTGAGAAGCTCGAAAACCTCAACAAAGATGCAATCTGCGG
TGCGACGCTTCATTACTCCCATTGGATATCTCTCATAGCCTATTTAGATGTCATTGGCGTACTCAAAGATATCAG
CGCCGTTTCTGAAATCACAGCTCGAACGACAAATCGATCTGTGAGTAGGTTGGTCTTCAGTATAAGGCGTAAACA
CTGAAAAGGGAACAGTTCCAAAAACGAGAACTTACTCTAGTTGACAAGAGCGGTTGCTCAATACAATTAACATTA
TGGGGTAAACAGGCAGAGTCGTTCACGGGTGAACCGGGCTCCATTGGTGCCTTCAAGGGCGTCAAAGTCGGTGAC
TTTGGGGGTGAGTTATCAACCTCTCGAGCAAATATGTATCGCTCATTTAATCAGGTGTTTCATTATCCACGACGC
CCTCGACTCATATACAACTGGATCCTCACATCCAGGATTGTTACACCCTTCGCGGCTGGTGGGACTCTCAAGGCT
CCGACATGTCTTTCCAATCCAAAACTGTTATTGGAGGTGGTGGTGGTCTCGGAATTGCTTTCAACCGTGCCCAAG
TTCGTAGTCTGAACGAAATCAAAGAAGCCGAGGTGGGCATGGGAGATAAGGCCGATACATTCTGTTGTCAAGGAA
CAATCGTTCATATCAGAGACCAAAACCTTCTTTACCCTGCCTGCCCAGGTAACAATTGTAACAAGAAAATGAGTA
TGTCGGGTGATACTTGGGTGTGTGATAAATGTGGTACGAACGCGGAGACGCCTGAATATAGGTAAGCACTACTTC
TCAACACATCTCAGGAGTGGATACTCATGAAATGAATAGATATATTCTTTCTATGGCTGTTGCCGACTGGTCTGG
CCAGGCATGGCTCCAGGGATTTAATGAAGCCGCAGTGATAGTTTTCGGTATGAGCGGAAATGAGCTCTACGATTT
GAAGGTATGAGTCATCTCGTATAGGATTGATTACCTTGGACGAACTCATCGTGATGCACAGATGCGGGATGAAGA
CAAATATAACGCCGTCATTCACAAGGCCCATTGCCAAACATATAATTTCGCATGTCGCGCCAAGAAAGATTCATA
TGAAGTGCGCAAAGATATTTACTCCTTTAAAGCGAGAGTCCTGACTTCTTTTCCCCTCCCAATAGGATCGCGTTC
GTATTCGATATGGTATTTCTCGGATAGAGAAAGTCGATTATCATGCAGAAACCCAATATCTACGAGACTTGCTTC
GTAGTCCTTGGGCTGCATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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