Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|103040
Gene name
Location	scaffold_07:1391725..1392619
Strand	+
Gene length (bp)	894
Transcript length (bp)	894
Coding sequence length (bp)	894
Protein length (aa)	298

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00753	Lactamase_B	Metallo-beta-lactamase superfamily	1.7E-08	43	268

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8VPD5\|AHLLM_RHIRD	N-acyl homoserine lactonase AttM OS=Rhizobium radiobacter GN=attM PE=1 SV=1	26	225	3.0E-09
sp\|Q7D3U0\|AHLLM_AGRFC	N-acyl homoserine lactonase AttM OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=attM PE=3 SV=3	26	226	4.0E-09
sp\|A8IQD2\|AHLLM_AZOC5	N-acyl homoserine lactonase AttM OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=attM PE=3 SV=1	99	276	5.0E-09
sp\|Q1M813\|AHLLM_RHIL3	N-acyl homoserine lactonase AttM OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=attM PE=3 SV=1	85	276	1.0E-07
sp\|A9CKY2\|AHLLB_AGRFC	N-acyl homoserine lactonase AiiB OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=aiiB PE=1 SV=1	18	290	9.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 37	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|103040 MALPPPADDQPYCSVSALEAGHIYLNMKMFIDNAASEETIRTPSLSFLLQHSVNKKKFVFDLGIRKDWENSPPKA VEWMRTVYKVDIPQDVSDSLAKGGLSPRDIDTVCISHIHFDHSGHAPLFGHSEFIVGGDTRQLLEPGIYPHNPNS FFSADILPPERTRFLGDELHWQPIGPFPRAYDLYGDGSLYIIDAPGHLSGHINLLARTSPDGAWIYLAADTAHHW NLVNGSSVIACGHPGHLHDTAHMDKELAEKMINRVREVMKVPRVKVILAHDKPWYDENKDKDAFFPGKINSL*
Coding	>Agabi119p4\|103040 ATGGCACTTCCTCCGCCTGCAGATGATCAACCTTATTGCAGTGTTTCTGCTCTTGAAGCAGGACATATCTACCTC AATATGAAAATGTTCATCGACAATGCTGCTTCGGAAGAAACCATTCGGACTCCGTCTCTCTCTTTTCTTCTTCAG CATTCTGTAAACAAAAAGAAATTCGTTTTCGATCTCGGAATTCGTAAAGACTGGGAGAATTCCCCGCCCAAGGCT GTCGAATGGATGCGCACCGTTTACAAAGTCGACATTCCCCAGGACGTCTCTGACTCTCTGGCTAAAGGCGGTTTA TCTCCCCGTGATATCGACACCGTCTGCATATCCCATATCCATTTCGACCACAGTGGTCATGCCCCTCTATTTGGC CACAGTGAATTTATAGTTGGCGGTGATACTCGCCAACTTCTTGAACCTGGGATCTATCCCCACAATCCTAATTCA TTTTTCTCTGCCGATATACTTCCACCTGAGAGAACGAGATTCCTTGGTGACGAATTGCACTGGCAGCCGATCGGG CCCTTCCCTCGCGCGTACGATTTGTATGGTGATGGAAGTCTATACATCATCGATGCTCCGGGGCACCTTTCTGGT CATATTAACCTTCTTGCTCGTACGAGCCCCGATGGCGCGTGGATATACCTTGCAGCTGACACCGCACATCATTGG AACTTGGTGAACGGATCGTCAGTCATTGCGTGCGGTCATCCTGGTCATCTACATGACACGGCGCATATGGACAAA GAACTCGCAGAGAAAATGATTAACCGTGTTCGAGAGGTGATGAAGGTCCCGAGGGTTAAGGTAATTCTGGCACAT GACAAACCTTGGTACGACGAGAACAAGGACAAGGATGCTTTCTTCCCGGGAAAAATTAATTCCCTCTGA
Transcript	>Agabi119p4\|103040 ATGGCACTTCCTCCGCCTGCAGATGATCAACCTTATTGCAGTGTTTCTGCTCTTGAAGCAGGACATATCTACCTC AATATGAAAATGTTCATCGACAATGCTGCTTCGGAAGAAACCATTCGGACTCCGTCTCTCTCTTTTCTTCTTCAG CATTCTGTAAACAAAAAGAAATTCGTTTTCGATCTCGGAATTCGTAAAGACTGGGAGAATTCCCCGCCCAAGGCT GTCGAATGGATGCGCACCGTTTACAAAGTCGACATTCCCCAGGACGTCTCTGACTCTCTGGCTAAAGGCGGTTTA TCTCCCCGTGATATCGACACCGTCTGCATATCCCATATCCATTTCGACCACAGTGGTCATGCCCCTCTATTTGGC CACAGTGAATTTATAGTTGGCGGTGATACTCGCCAACTTCTTGAACCTGGGATCTATCCCCACAATCCTAATTCA TTTTTCTCTGCCGATATACTTCCACCTGAGAGAACGAGATTCCTTGGTGACGAATTGCACTGGCAGCCGATCGGG CCCTTCCCTCGCGCGTACGATTTGTATGGTGATGGAAGTCTATACATCATCGATGCTCCGGGGCACCTTTCTGGT CATATTAACCTTCTTGCTCGTACGAGCCCCGATGGCGCGTGGATATACCTTGCAGCTGACACCGCACATCATTGG AACTTGGTGAACGGATCGTCAGTCATTGCGTGCGGTCATCCTGGTCATCTACATGACACGGCGCATATGGACAAA GAACTCGCAGAGAAAATGATTAACCGTGTTCGAGAGGTGATGAAGGTCCCGAGGGTTAAGGTAATTCTGGCACAT GACAAACCTTGGTACGACGAGAACAAGGACAAGGATGCTTTCTTCCCGGGAAAAATTAATTCCCTCTGA
Gene	>Agabi119p4\|103040 ATGGCACTTCCTCCGCCTGCAGATGATCAACCTTATTGCAGTGTTTCTGCTCTTGAAGCAGGACATATCTACCTC AATATGAAAATGTTCATCGACAATGCTGCTTCGGAAGAAACCATTCGGACTCCGTCTCTCTCTTTTCTTCTTCAG CATTCTGTAAACAAAAAGAAATTCGTTTTCGATCTCGGAATTCGTAAAGACTGGGAGAATTCCCCGCCCAAGGCT GTCGAATGGATGCGCACCGTTTACAAAGTCGACATTCCCCAGGACGTCTCTGACTCTCTGGCTAAAGGCGGTTTA TCTCCCCGTGATATCGACACCGTCTGCATATCCCATATCCATTTCGACCACAGTGGTCATGCCCCTCTATTTGGC CACAGTGAATTTATAGTTGGCGGTGATACTCGCCAACTTCTTGAACCTGGGATCTATCCCCACAATCCTAATTCA TTTTTCTCTGCCGATATACTTCCACCTGAGAGAACGAGATTCCTTGGTGACGAATTGCACTGGCAGCCGATCGGG CCCTTCCCTCGCGCGTACGATTTGTATGGTGATGGAAGTCTATACATCATCGATGCTCCGGGGCACCTTTCTGGT CATATTAACCTTCTTGCTCGTACGAGCCCCGATGGCGCGTGGATATACCTTGCAGCTGACACCGCACATCATTGG AACTTGGTGAACGGATCGTCAGTCATTGCGTGCGGTCATCCTGGTCATCTACATGACACGGCGCATATGGACAAA GAACTCGCAGAGAAAATGATTAACCGTGTTCGAGAGGTGATGAAGGTCCCGAGGGTTAAGGTAATTCTGGCACAT GACAAACCTTGGTACGACGAGAACAAGGACAAGGATGCTTTCTTCCCGGGAAAAATTAATTCCCTCTGA

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