Protein ID | Agabi119p4|103010 |
Gene name | |
Location | scaffold_07:1384560..1387694 |
Strand | - |
Gene length (bp) | 3134 |
Transcript length (bp) | 2508 |
Coding sequence length (bp) | 2508 |
Protein length (aa) | 836 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06978 | POP1 | Ribonucleases P/MRP protein subunit POP1 | 2.5E-21 | 62 | 137 |
PF06978 | POP1 | Ribonucleases P/MRP protein subunit POP1 | 5.8E-26 | 131 | 212 |
PF08170 | POPLD | POPLD (NUC188) domain | 6.0E-32 | 502 | 593 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q99575|POP1_HUMAN | Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens GN=POP1 PE=1 SV=2 | 53 | 594 | 6.0E-75 |
sp|Q9UTA4|POPI_SCHPO | Ribonucleases P/MRP protein subunit pop1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pop1 PE=3 SV=1 | 7 | 593 | 2.0E-60 |
sp|P41812|POP1_YEAST | Ribonucleases P/MRP protein subunit POP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POP1 PE=1 SV=1 | 147 | 787 | 8.0E-29 |
sp|Q11188|YPD9_CAEEL | Uncharacterized protein C05D11.9 OS=Caenorhabditis elegans GN=C05D11.9 PE=4 SV=2 | 57 | 594 | 9.0E-28 |
sp|P41812|POP1_YEAST | Ribonucleases P/MRP protein subunit POP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POP1 PE=1 SV=1 | 8 | 120 | 9.0E-15 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 67 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Agabi119p4|103010 MSHPGNKRKNGGDEMSGRDKKKLKMNAARTIPVQSVPMARGSGSGIIKGMSGLPSAIDVEKFAEARAYEIDAMEK AMKNASGASTQRAWQALPRHLRRRAASHDVRRVPAKLRGKAKAEMDPPSKKVKSRKLPKAGKNKKISKTESFQKR QRDKSWLETHLWHAKRMKMENMWGYRLAVQPTEKSYRPSHRASIQGSIIHDASYFATLELKGPQFILEYILGLIC DLQGAGAGATRWVVGSRAFNTHLHKCDFYPFGCLGPATIIWRPSNTQNQGLLRPGPLQKNNEPSTDCVATTPDNK TTRNLWLRVHPAIFEDVTVELKKAVSRALDRPRPPPEEFEVEIADLRGQVNAFEIMGPKSNQVLRGALDPISKDD RNVFKQFWMSLSKTQSPSAIPRDMIIGASVIDPRLKFPPKNAHVEYKEESSIIYLSTELARSDIWEHDIRKTLSK PRYTKKDIDDRRSKNLVPGTPLKPERQDDRVPILLIRRTLEAPDAESQSISGYTLLFPAGWSMAFWSSLIYTGTR VGGQRERQTQAYEAGVPYFPRDFPSSLAYEKYADEREIEERDTWTRKPPAKRVNYQKLGVHSPWRADWEVVLGLK EATSPFDTAEGEPEDLVSTQRDDRMDVDKKDAETGDGDKAGDTSMNLDEFEVKPWLFRGSEINRILATLQTDPAT NLLKEVNKMRQKRDLEPLNSSINPDALLKHALINVRVTVFKEGVPEDMAMIYQVSDEEATNWERLVHTREDRGGP SILQLANKRPPQEDIIGYVTTGHYSLSRGKGFAIGAVPLTKFLELRAQQSRLHPLQTVEGQTLLVKVRNINGQQC RPAHLRTLEC* |
Coding | >Agabi119p4|103010 ATGTCACATCCAGGCAACAAGCGTAAGAACGGAGGCGACGAAATGTCGGGGCGCGACAAGAAGAAGCTAAAAATG AACGCTGCAAGAACCATTCCTGTCCAGTCTGTTCCTATGGCGCGTGGTTCCGGGAGTGGTATTATAAAGGGGATG AGTGGACTTCCAAGTGCTATAGACGTTGAGAAATTCGCTGAAGCAAGAGCTTATGAAATCGACGCCATGGAAAAA GCCATGAAGAATGCTAGTGGTGCTTCGACTCAAAGAGCGTGGCAGGCCCTTCCAAGGCACCTACGCCGCAGAGCC GCTAGTCACGACGTTCGTCGCGTCCCTGCTAAACTTCGGGGAAAGGCAAAAGCCGAGATGGATCCCCCAAGTAAG AAAGTCAAAAGTCGAAAGCTTCCTAAGGCGGGCAAAAACAAGAAAATCAGTAAAACTGAATCCTTCCAAAAACGA CAAAGAGATAAGTCTTGGCTAGAGACTCACTTGTGGCATGCGAAACGGATGAAGATGGAAAATATGTGGGGATAT CGTCTAGCAGTACAACCGACAGAAAAATCCTACCGTCCCTCCCACCGTGCTTCTATCCAAGGATCAATCATCCAT GACGCTTCATACTTTGCGACCCTCGAACTGAAAGGCCCACAATTTATTCTCGAATATATTCTTGGATTAATCTGT GACCTTCAAGGCGCAGGTGCTGGCGCGACTCGCTGGGTCGTGGGTTCTCGTGCTTTTAATACTCACCTTCATAAA TGCGATTTCTACCCTTTTGGCTGTCTTGGCCCAGCAACGATTATATGGCGTCCGTCGAATACTCAAAATCAGGGC CTGTTACGGCCAGGCCCTTTACAAAAGAACAACGAGCCGTCAACCGATTGCGTAGCAACTACTCCTGATAATAAA ACAACGAGAAATCTATGGTTGCGTGTGCATCCAGCCATATTTGAAGATGTCACTGTTGAATTGAAGAAGGCGGTT TCCCGAGCCTTAGATCGCCCAAGACCCCCACCGGAAGAGTTCGAAGTTGAGATCGCAGATCTGAGAGGACAAGTC AATGCATTTGAAATCATGGGTCCAAAGTCAAATCAGGTCTTGAGAGGTGCATTGGACCCGATTTCGAAAGATGAT AGAAACGTCTTCAAGCAGTTTTGGATGTCTTTATCTAAAACGCAATCACCCAGTGCGATACCTCGCGACATGATC ATCGGAGCCTCGGTTATCGATCCAAGGCTGAAATTTCCGCCCAAAAATGCCCACGTTGAGTACAAGGAGGAGTCA TCAATAATCTACCTGAGCACTGAGCTTGCGAGGAGTGATATATGGGAGCACGATATTCGTAAAACACTATCCAAA CCACGCTACACCAAGAAGGATATCGACGATCGACGTTCCAAGAACCTTGTTCCGGGTACCCCGTTAAAACCAGAA CGCCAAGACGATCGTGTACCTATTCTCCTTATCAGACGCACACTCGAAGCGCCAGATGCAGAAAGCCAATCCATC AGCGGATACACGCTCCTATTTCCCGCAGGATGGTCAATGGCGTTTTGGTCTTCTCTCATATATACTGGTACTCGT GTTGGGGGACAACGCGAACGACAAACGCAAGCTTATGAAGCTGGTGTACCTTACTTTCCTCGTGATTTTCCTTCC TCTCTTGCATATGAGAAGTATGCGGACGAAAGGGAGATCGAGGAAAGGGACACATGGACAAGGAAACCTCCTGCT AAGAGGGTAAACTATCAAAAGCTTGGAGTGCATAGTCCGTGGCGGGCAGATTGGGAGGTTGTACTTGGATTGAAG GAGGCGACGTCTCCTTTTGATACAGCGGAGGGAGAACCAGAAGATCTTGTGTCGACACAAAGGGATGATCGGATG GATGTGGACAAGAAAGACGCTGAGACCGGTGATGGGGATAAGGCTGGTGATACCTCAATGAATCTTGACGAATTC GAAGTCAAACCATGGCTCTTTCGAGGTTCCGAGATCAACAGGATTCTCGCTACATTACAGACGGACCCTGCCACC AATCTCTTAAAAGAGGTCAACAAAATGCGACAGAAAAGGGATCTAGAACCATTGAATTCATCGATAAACCCAGAT GCGTTACTCAAGCATGCCCTAATCAATGTCAGAGTCACTGTGTTCAAAGAAGGCGTGCCTGAAGATATGGCTATG ATCTATCAAGTGTCTGATGAGGAGGCTACGAATTGGGAGCGATTGGTGCATACGCGCGAGGATAGAGGTGGTCCT AGCATACTACAGCTGGCGAATAAGCGACCACCTCAAGAAGATATCATTGGTTATGTTACAACGGGCCACTACTCG TTATCGAGAGGAAAAGGATTTGCAATAGGCGCGGTTCCCTTGACCAAATTTCTCGAATTACGAGCACAGCAAAGC CGACTCCACCCTCTTCAAACTGTGGAAGGGCAAACGTTGCTTGTCAAGGTTCGAAACATCAACGGTCAACAATGT CGTCCGGCACATCTCCGAACCCTAGAATGCTAA |
Transcript | >Agabi119p4|103010 ATGTCACATCCAGGCAACAAGCGTAAGAACGGAGGCGACGAAATGTCGGGGCGCGACAAGAAGAAGCTAAAAATG AACGCTGCAAGAACCATTCCTGTCCAGTCTGTTCCTATGGCGCGTGGTTCCGGGAGTGGTATTATAAAGGGGATG AGTGGACTTCCAAGTGCTATAGACGTTGAGAAATTCGCTGAAGCAAGAGCTTATGAAATCGACGCCATGGAAAAA GCCATGAAGAATGCTAGTGGTGCTTCGACTCAAAGAGCGTGGCAGGCCCTTCCAAGGCACCTACGCCGCAGAGCC GCTAGTCACGACGTTCGTCGCGTCCCTGCTAAACTTCGGGGAAAGGCAAAAGCCGAGATGGATCCCCCAAGTAAG AAAGTCAAAAGTCGAAAGCTTCCTAAGGCGGGCAAAAACAAGAAAATCAGTAAAACTGAATCCTTCCAAAAACGA CAAAGAGATAAGTCTTGGCTAGAGACTCACTTGTGGCATGCGAAACGGATGAAGATGGAAAATATGTGGGGATAT CGTCTAGCAGTACAACCGACAGAAAAATCCTACCGTCCCTCCCACCGTGCTTCTATCCAAGGATCAATCATCCAT GACGCTTCATACTTTGCGACCCTCGAACTGAAAGGCCCACAATTTATTCTCGAATATATTCTTGGATTAATCTGT GACCTTCAAGGCGCAGGTGCTGGCGCGACTCGCTGGGTCGTGGGTTCTCGTGCTTTTAATACTCACCTTCATAAA TGCGATTTCTACCCTTTTGGCTGTCTTGGCCCAGCAACGATTATATGGCGTCCGTCGAATACTCAAAATCAGGGC CTGTTACGGCCAGGCCCTTTACAAAAGAACAACGAGCCGTCAACCGATTGCGTAGCAACTACTCCTGATAATAAA ACAACGAGAAATCTATGGTTGCGTGTGCATCCAGCCATATTTGAAGATGTCACTGTTGAATTGAAGAAGGCGGTT TCCCGAGCCTTAGATCGCCCAAGACCCCCACCGGAAGAGTTCGAAGTTGAGATCGCAGATCTGAGAGGACAAGTC AATGCATTTGAAATCATGGGTCCAAAGTCAAATCAGGTCTTGAGAGGTGCATTGGACCCGATTTCGAAAGATGAT AGAAACGTCTTCAAGCAGTTTTGGATGTCTTTATCTAAAACGCAATCACCCAGTGCGATACCTCGCGACATGATC ATCGGAGCCTCGGTTATCGATCCAAGGCTGAAATTTCCGCCCAAAAATGCCCACGTTGAGTACAAGGAGGAGTCA TCAATAATCTACCTGAGCACTGAGCTTGCGAGGAGTGATATATGGGAGCACGATATTCGTAAAACACTATCCAAA CCACGCTACACCAAGAAGGATATCGACGATCGACGTTCCAAGAACCTTGTTCCGGGTACCCCGTTAAAACCAGAA CGCCAAGACGATCGTGTACCTATTCTCCTTATCAGACGCACACTCGAAGCGCCAGATGCAGAAAGCCAATCCATC AGCGGATACACGCTCCTATTTCCCGCAGGATGGTCAATGGCGTTTTGGTCTTCTCTCATATATACTGGTACTCGT GTTGGGGGACAACGCGAACGACAAACGCAAGCTTATGAAGCTGGTGTACCTTACTTTCCTCGTGATTTTCCTTCC TCTCTTGCATATGAGAAGTATGCGGACGAAAGGGAGATCGAGGAAAGGGACACATGGACAAGGAAACCTCCTGCT AAGAGGGTAAACTATCAAAAGCTTGGAGTGCATAGTCCGTGGCGGGCAGATTGGGAGGTTGTACTTGGATTGAAG GAGGCGACGTCTCCTTTTGATACAGCGGAGGGAGAACCAGAAGATCTTGTGTCGACACAAAGGGATGATCGGATG GATGTGGACAAGAAAGACGCTGAGACCGGTGATGGGGATAAGGCTGGTGATACCTCAATGAATCTTGACGAATTC GAAGTCAAACCATGGCTCTTTCGAGGTTCCGAGATCAACAGGATTCTCGCTACATTACAGACGGACCCTGCCACC AATCTCTTAAAAGAGGTCAACAAAATGCGACAGAAAAGGGATCTAGAACCATTGAATTCATCGATAAACCCAGAT GCGTTACTCAAGCATGCCCTAATCAATGTCAGAGTCACTGTGTTCAAAGAAGGCGTGCCTGAAGATATGGCTATG ATCTATCAAGTGTCTGATGAGGAGGCTACGAATTGGGAGCGATTGGTGCATACGCGCGAGGATAGAGGTGGTCCT AGCATACTACAGCTGGCGAATAAGCGACCACCTCAAGAAGATATCATTGGTTATGTTACAACGGGCCACTACTCG TTATCGAGAGGAAAAGGATTTGCAATAGGCGCGGTTCCCTTGACCAAATTTCTCGAATTACGAGCACAGCAAAGC CGACTCCACCCTCTTCAAACTGTGGAAGGGCAAACGTTGCTTGTCAAGGTTCGAAACATCAACGGTCAACAATGT CGTCCGGCACATCTCCGAACCCTAGAATGCTAA |
Gene | >Agabi119p4|103010 ATGTCACATCCAGGCAACAAGCGTAAGAACGGAGGCGACGAAATGTCGGGGCGCGACAAGAAGAAGCTAAAAATG AACGCTGCAAGAACCATTCCTGTCCAGTCTGTTCCTATGGCGCGTGGTTCCGGGAGTGGTATTATAAAGGGTATG GACTATCTCAATAGTTTGACTAGTATTTGACGGTTTAATAAGGGATGAGTGGACTTCCAAGTGCTATAGACGTTG AGAAATTCGCTGAAGTGTGTTTAATATCGAACTTTCCCCAAAGGCACTCAATAATCAATTAGTAGGCAAGAGCTT ATGAAATCGACGCCATGGAAAAAGCCATGAAGAATGCTAGGTACTCAAGTTGAGTGGAATTGAGAGTTAAGCTGA CCATCAATATCCTAGTGGTGCTTCGACTCAAAGAGCGTGGCAGGCCCTTCCAAGGCACCTACGCCGCAGAGCCGC TAGTCACGACGTTCGTCGCGTCCCTGCTAAACTTCGGGGAAAGGCAAAAGCCGAGGCGAGCAATGCTGTCGAATG GGTCATTTATTTCTCATTCACCATCGGATCTCTGTAGATGGATCCCCCAAGTAAGAAAGTCAAAAGTCGAAAGCT TCCTAAGGCGGGCAAAAACAAGAAAATCAGTAAAACTGAATCCTTCCAAAAACGACAAAGTATGTTCAACTGTTT TTCGATATGTTTAAAATTGACGTGAAACAATTCACAAGGAGATAAGTCTTGGCTAGAGACTCACTTGTGGCATGC GAAACGGATGAAGATGGAAAATATGTGGGGATATCGTCTAGTGAGCTAACCTATATCATCTTCGAGCGTTCATTA AACCTATCCCAGGCAGTACAACCGACAGAAAAATCCTACCGTCCCTCCCACCGTGCTTCTATCCAAGGATCAATC ATCCATGACGCTTCATACTTTGCGACCCTCGAACTGAAAGGCCCACAATTTATTCTCGAATATATTCTTGGATTA ATCTGTGACCTTCAAGGCGCAGGTGCTGGCGCGACTCGGTGCGTTTTAACTATTTTGATACCTTTATCACGCATA CTCATCTTAAAATGCAGCTGGGTCGTGGGTTCTCGTGCTTTTAATACTCACCTTCATAAATGCGATTTCTACCCT TTTGGCTGTCTTGGCCCAGCAACGATTATATGGCGTCCGTCGAATACTCAAAATCAGGGCCTGTTACGGCCAGGC CCTTTACAAAAGAACAACGAGCCGTCAACCGATTGCGTAGCAACTACTCCTGATAATAAAACAACGAGAAATCTA TGGTTGCGTGTGCATCCAGCCATATTTGAAGATGTCACTGTTGAATTGAAGAAGGCGGTTTCCCGAGCCTTAGAT CGCCCAAGACCCCCACCGGAAGAGTTCGAAGTTGAGATCGCAGATCTGAGAGGACAAGTCAATGCATTTGAAATC ATGGGTCCAAAGTCAAATCAGGTCTTGAGAGGTGCATTGGACCCGATTTCGAAAGATGATAGAAACGTCTTCAAG CAGGTCTGTCTTCCTTTCAAGCCGGGGCGAGAAGTTTCTGATTCGTGGTTTAGTTTTGGATGTCTTTATCTAAAA CGCAATCACCCAGTGCGATACCTCGCGACATGATCATCGGAGCCTCGGTTATCGATCCAAGGCTGAAGTAAGTCA TACCCAGAAAGTCACCGTATGGATAATTCATCAATTCTTCACAGATTTCCGCCCAAAAATGCCCACGTTGAGTAC AAGGAGGAGTCATCAATAATCTACCTGAGCACTGAGCTTGCGAGGAGTGATATATGGGAGCACGATATTCGTAAA ACACTATCCAAACCACGCTACACCAAGAAGGATATCGACGATCGACGTTCCAAGGTCAGCAGTCAATCTCCCCTC CCCCCATTCTGCCACTAATGTACAGTCAATAGAACCTTGTTCCGGGTACCCCGTTAAAACCAGAACGCCAAGACG ATCGTGTACCTATTCTCCTTATCAGACGCACACTCGAAGCGCCAGATGCAGAAAGCCAATCCATCAGCGGATACA CGCTCCTATTTCCCGCAGGATGGTCAATGGCGTTTTGGTCTTCTCTCATATATACTGGTACTCGTGTTGGGGGAC AACGCGAACGACAAACGCAAGCTTATGAAGCTGGTGTACCTTACTTTCCTCGTGATTTTCCTTCCTCTCTTGCAT ATGAGAAGTATGCGGACGAAAGGGAGATCGAGGAAAGGGACACATGGACAAGGAAACCTCCTGCTAAGAGGGTAA ACTATCAAAAGCTTGGAGTGCATAGTCCGTGGCGGGCAGATTGGGAGGTTGTACTTGGATTGAAGGAGGCGACGT CTCCTTTTGATACAGCGGAGGGAGAACCAGAAGATCTTGTGTCGACACAAAGGGATGATCGGATGGATGTGGACA AGAAAGACGCTGAGACCGGTGATGGGGATAAGGCTGGTGATACCTCAATGAATCTTGACGAATTCGAAGTCAAAC CATGGCTCTTTCGAGGTTCCGAGATCAACAGGATTCTCGCTACATTACAGACGGACCCTGCCACCAATCTCTTAA AAGAGGTCAACAAAATGCGACAGAAAAGGGATCTAGAACCATTGAATTCATCGATAAACCCAGATGCGTTACTCA AGCATGCCCTAATCAATGTCAGAGTCACTGTGTTCAAAGAAGGCGTGCCTGAAGATATGGCTATGATCTATCAAG TGTCTGATGAGGAGGCTACGAATTGGGAGCGATTGGTGCATACGCGCGAGGATAGAGGTGGTCCTAGCATACTAC AGGTTAGTCCATTTGCCAATTCTTCTCAGTTCCTTAGTAAGATGGTTTTGTATAGCTGGCGAATAAGCGACCACC TCAAGAAGATATCATTGGTTATGTTACAACGGGCCACTACTCGTTATCGAGAGGAAAAGGATTTGCAATAGGCGC GGTTCCCTTGACCAAATTTCTCGAATTACGAGCACAGCAAAGCCGGTATGTCTATACTGTCCGCAACCAAGTGGT TTCCTTCATATATGTATCTATGATCTAGACTCCACCCTCTTCAAACTGTGGAAGGGCAAACGTTGCTTGTCAAGG TTCGAAACATCAACGGTCAACAATGTCGTCCGGCACATCTCCGAACCCTAGAATGCTAA |