Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabi119p4|102570
Gene name
Locationscaffold_07:1278207..1279859
Strand+
Gene length (bp)1652
Transcript length (bp)1545
Coding sequence length (bp)1545
Protein length (aa) 515

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00890 FAD_binding_2 FAD binding domain 2.3E-35 84 491

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q9Z4P0|FRD2_SHEFN Fumarate reductase flavoprotein subunit OS=Shewanella frigidimarina (strain NCIMB 400) GN=ifcA PE=1 SV=1 8 510 1.0E-24
sp|Q8CVD0|URDA_SHEON Urocanate reductase OS=Shewanella oneidensis (strain MR-1) GN=urdA PE=1 SV=1 2 509 1.0E-22
sp|P0C278|FRDA_SHEFR Fumarate reductase flavoprotein subunit OS=Shewanella frigidimarina GN=fccA PE=1 SV=1 18 513 1.0E-17
sp|Q07WU7|FRDA_SHEFN Fumarate reductase flavoprotein subunit OS=Shewanella frigidimarina (strain NCIMB 400) GN=fccA PE=1 SV=2 18 513 1.0E-17
sp|A0R4S9|3O1D_MYCS2 3-oxosteroid 1-dehydrogenase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=ksdD PE=1 SV=1 3 498 1.0E-16
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9Z4P0|FRD2_SHEFN Fumarate reductase flavoprotein subunit OS=Shewanella frigidimarina (strain NCIMB 400) GN=ifcA PE=1 SV=1 8 510 1.0E-24
sp|Q8CVD0|URDA_SHEON Urocanate reductase OS=Shewanella oneidensis (strain MR-1) GN=urdA PE=1 SV=1 2 509 1.0E-22
sp|P0C278|FRDA_SHEFR Fumarate reductase flavoprotein subunit OS=Shewanella frigidimarina GN=fccA PE=1 SV=1 18 513 1.0E-17
sp|Q07WU7|FRDA_SHEFN Fumarate reductase flavoprotein subunit OS=Shewanella frigidimarina (strain NCIMB 400) GN=fccA PE=1 SV=2 18 513 1.0E-17
sp|A0R4S9|3O1D_MYCS2 3-oxosteroid 1-dehydrogenase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=ksdD PE=1 SV=1 3 498 1.0E-16
sp|P83223|FRDA_SHEON Fumarate reductase flavoprotein subunit OS=Shewanella oneidensis (strain MR-1) GN=SO_0970 PE=1 SV=2 93 512 3.0E-15
sp|O13755|OSM1_SCHPO Fumarate reductase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=osm1 PE=3 SV=1 73 513 4.0E-14
sp|P71864|3O1D1_MYCTU 3-oxosteroid 1-dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=kstD PE=1 SV=3 3 498 2.0E-12
sp|Q7D5C1|3O1D2_MYCTO 3-oxosteroid 1-dehydrogenase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=kstD PE=1 SV=1 3 498 2.0E-12
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Agabi119p4|102570
MAQYYDCIVVGSGHAGSSAAFSAAQSGCKNVIDKCPPKWAGGNGYFTAGAHRIVHGGLQDILSLVSNVTPSEASK
IDLAPYTSDEFTSDLQRLSGGQSDPQLADTLVRESRQAAQWLKDDIGVDFVMSFNRQAYIVNDRQVFWGGMALSV
NGGGKGLIKAHSDALNRVGVEKMFNTKAVRLVMKDGQVDGLVAEKVGGDGQPQEIAFTTPSVILAAGGFEADREM
REKFLGKGWAMAKVRGTPYNTGDGFEIARSVGVQVAGDWGTCHSTCWDANASAETGQRDLTNQFTKSGYPLGVMI
NSQGERFVDEGEDFRNFTYAKFGRAILSQPQGIAFQVWDSKVIDKLRQEEYGDGVVDKLFANSLEELVEKLAGKG
LEASAKDRFVRTILDYNSAVDAHREQNSDVRWDPAIKDGSGTLGLPLPKSNWALTIDKAPFMAVKVTCGITFTFG
GLAIDPVGAGVLNEKGNTIEGLYCTGEMVGGLFSGNYPGGSGLTAGAVFGRKAGQSAAQRVKRT*
Coding >Agabi119p4|102570
ATGGCTCAATACTATGACTGCATCGTCGTAGGCTCCGGCCACGCAGGTAGCAGTGCGGCTTTTTCGGCTGCTCAA
TCTGGTTGCAAGAATGTTATCGATAAATGTCCACCCAAATGGGCAGGCGGAAACGGTTACTTCACCGCAGGAGCT
CATCGTATTGTTCATGGTGGTTTGCAGGACATCTTGAGCCTCGTCTCGAATGTGACACCGTCTGAAGCTTCCAAA
ATTGATCTGGCGCCGTACACCAGTGATGAATTCACTTCAGACTTGCAAAGGCTTTCGGGCGGTCAATCAGATCCA
CAACTGGCTGATACACTCGTACGGGAGTCGAGGCAGGCTGCGCAATGGCTTAAAGATGATATCGGCGTAGACTTC
GTGATGTCATTTAACCGTCAAGCATATATAGTGAACGACCGTCAAGTGTTTTGGGGAGGGATGGCGTTGAGTGTT
AATGGCGGTGGGAAGGGGTTGATCAAGGCTCATTCGGATGCTTTGAACAGAGTTGGGGTGGAGAAAATGTTTAAC
ACAAAGGCGGTTCGGTTGGTCATGAAGGATGGCCAAGTGGATGGACTCGTGGCTGAGAAAGTTGGTGGCGATGGT
CAACCACAGGAGATTGCCTTTACGACCCCATCTGTTATTCTCGCTGCTGGGGGGTTTGAAGCTGATCGTGAAATG
AGAGAAAAGTTTCTTGGAAAGGGGTGGGCAATGGCCAAGGTTCGAGGGACACCATACAACACAGGCGATGGTTTT
GAGATTGCACGAAGTGTTGGCGTCCAAGTAGCGGGTGACTGGGGTACCTGCCATAGTACCTGTTGGGACGCTAAT
GCATCTGCGGAAACGGGCCAGCGTGATCTTACGAATCAATTCACGAAATCGGGATACCCTCTGGGCGTCATGATA
AATTCTCAAGGAGAACGATTTGTAGATGAAGGAGAGGATTTTCGAAATTTCACCTATGCTAAGTTTGGGCGCGCA
ATTCTGTCGCAGCCCCAAGGCATTGCATTCCAGGTTTGGGATTCCAAAGTCATAGACAAACTGAGGCAAGAAGAG
TATGGTGATGGAGTGGTCGACAAGTTATTTGCCAATTCATTAGAAGAACTTGTGGAGAAGCTGGCTGGAAAAGGG
CTCGAAGCTTCTGCGAAAGACCGGTTTGTGAGGACGATACTGGATTACAACAGTGCTGTGGATGCGCATCGAGAG
CAAAACTCGGACGTGCGGTGGGATCCCGCCATCAAGGATGGAAGTGGGACATTGGGTCTGCCGCTCCCCAAATCG
AACTGGGCGCTCACAATTGACAAGGCTCCATTCATGGCAGTGAAGGTAACGTGCGGTATCACATTCACGTTTGGA
GGGTTAGCGATCGATCCGGTTGGGGCTGGTGTTCTGAACGAAAAAGGAAACACAATCGAGGGACTGTATTGCACG
GGAGAAATGGTTGGAGGGCTCTTCTCTGGCAACTATCCCGGTGGGAGCGGGCTGACTGCTGGGGCTGTTTTCGGG
CGCAAGGCGGGCCAGAGTGCAGCGCAGCGAGTGAAGCGTACATAA
Transcript >Agabi119p4|102570
ATGGCTCAATACTATGACTGCATCGTCGTAGGCTCCGGCCACGCAGGTAGCAGTGCGGCTTTTTCGGCTGCTCAA
TCTGGTTGCAAGAATGTTATCGATAAATGTCCACCCAAATGGGCAGGCGGAAACGGTTACTTCACCGCAGGAGCT
CATCGTATTGTTCATGGTGGTTTGCAGGACATCTTGAGCCTCGTCTCGAATGTGACACCGTCTGAAGCTTCCAAA
ATTGATCTGGCGCCGTACACCAGTGATGAATTCACTTCAGACTTGCAAAGGCTTTCGGGCGGTCAATCAGATCCA
CAACTGGCTGATACACTCGTACGGGAGTCGAGGCAGGCTGCGCAATGGCTTAAAGATGATATCGGCGTAGACTTC
GTGATGTCATTTAACCGTCAAGCATATATAGTGAACGACCGTCAAGTGTTTTGGGGAGGGATGGCGTTGAGTGTT
AATGGCGGTGGGAAGGGGTTGATCAAGGCTCATTCGGATGCTTTGAACAGAGTTGGGGTGGAGAAAATGTTTAAC
ACAAAGGCGGTTCGGTTGGTCATGAAGGATGGCCAAGTGGATGGACTCGTGGCTGAGAAAGTTGGTGGCGATGGT
CAACCACAGGAGATTGCCTTTACGACCCCATCTGTTATTCTCGCTGCTGGGGGGTTTGAAGCTGATCGTGAAATG
AGAGAAAAGTTTCTTGGAAAGGGGTGGGCAATGGCCAAGGTTCGAGGGACACCATACAACACAGGCGATGGTTTT
GAGATTGCACGAAGTGTTGGCGTCCAAGTAGCGGGTGACTGGGGTACCTGCCATAGTACCTGTTGGGACGCTAAT
GCATCTGCGGAAACGGGCCAGCGTGATCTTACGAATCAATTCACGAAATCGGGATACCCTCTGGGCGTCATGATA
AATTCTCAAGGAGAACGATTTGTAGATGAAGGAGAGGATTTTCGAAATTTCACCTATGCTAAGTTTGGGCGCGCA
ATTCTGTCGCAGCCCCAAGGCATTGCATTCCAGGTTTGGGATTCCAAAGTCATAGACAAACTGAGGCAAGAAGAG
TATGGTGATGGAGTGGTCGACAAGTTATTTGCCAATTCATTAGAAGAACTTGTGGAGAAGCTGGCTGGAAAAGGG
CTCGAAGCTTCTGCGAAAGACCGGTTTGTGAGGACGATACTGGATTACAACAGTGCTGTGGATGCGCATCGAGAG
CAAAACTCGGACGTGCGGTGGGATCCCGCCATCAAGGATGGAAGTGGGACATTGGGTCTGCCGCTCCCCAAATCG
AACTGGGCGCTCACAATTGACAAGGCTCCATTCATGGCAGTGAAGGTAACGTGCGGTATCACATTCACGTTTGGA
GGGTTAGCGATCGATCCGGTTGGGGCTGGTGTTCTGAACGAAAAAGGAAACACAATCGAGGGACTGTATTGCACG
GGAGAAATGGTTGGAGGGCTCTTCTCTGGCAACTATCCCGGTGGGAGCGGGCTGACTGCTGGGGCTGTTTTCGGG
CGCAAGGCGGGCCAGAGTGCAGCGCAGCGAGTGAAGCGTACATAA
Gene >Agabi119p4|102570
ATGGCTCAATACTATGACTGCATCGTCGTAGGCTCCGGCCACGCAGGTAGCAGTGCGGCTTTTTCGGCTGCTCAA
TCTGGTTGCAAGAATGGTAATATAGGGTTTTCTTGTACGCATTCGCGGTCATGACGCGGCCCCCTAGTTTTAGTT
ATCGATAAATGTCCACCCAAATGGGCAGGCGGAAACGGTTACTTCACCGCAGGAGCTCATCGTATTGTTCATGGT
GGTTTGCAGGACATCTTGAGCCTCGTCTCGAATGTGACACCGTCTGAAGCTTCCAAAATTGATCTGGCGCCGTAC
ACCAGTGATGAATTCACTTCAGACTTGCAAAGGCTTTCGGGCGGTCAATCAGATCCACAACTGGCTGATACACTC
GTACGGGAGTCGAGGCAGGCTGCGCAATGGCTTAAAGATGATATCGGCGTAGACTTCGTGATGTCATTTAACCGT
CAAGCATATATAGTGAACGACCGTCAAGTGTTTTGGGGAGGGATGGCGTTGAGTGTTAATGGCGGTGGGAAGGGG
TTGATCAAGGCTCATTCGGATGCTTTGAACAGAGTTGGGGTGGAGAAAATGTTTAACACAAAGGCGGTTCGGTTG
GTCATGAAGGATGGCCAAGTGGATGGACTCGTGGCTGAGAAAGTTGGTGGCGATGGTCAACCACAGGAGATTGCC
TTTACGACCCCATCTGTTATTCTCGCTGCTGGGGGGTTTGAAGCTGATCGTGAAATGAGAGAAAAGTTTCTTGGA
AAGGGGTGGGCAATGGCCAAGGTAGGCATAATTTCAGCATCTCTGAATTTCATTGATAGGTCCATACTCAGGTTC
GAGGGACACCATACAACACAGGCGATGGTTTTGAGATTGCACGAAGTGTTGGCGTCCAAGTAGCGGGTGACTGGG
GTACCTGCCATAGTACCTGTTGGGACGCTAATGCATCTGCGGAAACGGGCCAGCGTGATCTTACGAATCAATTCA
CGAAATCGGGATACCCTCTGGGCGTCATGATAAATTCTCAAGGAGAACGATTTGTAGATGAAGGAGAGGATTTTC
GAAATTTCACCTATGCTAAGTTTGGGCGCGCAATTCTGTCGCAGCCCCAAGGCATTGCATTCCAGGTTTGGGATT
CCAAAGTCATAGACAAACTGAGGCAAGAAGAGTATGGTGATGGAGTGGTCGACAAGTTATTTGCCAATTCATTAG
AAGAACTTGTGGAGAAGCTGGCTGGAAAAGGGCTCGAAGCTTCTGCGAAAGACCGGTTTGTGAGGACGATACTGG
ATTACAACAGTGCTGTGGATGCGCATCGAGAGCAAAACTCGGACGTGCGGTGGGATCCCGCCATCAAGGATGGAA
GTGGGACATTGGGTCTGCCGCTCCCCAAATCGAACTGGGCGCTCACAATTGACAAGGCTCCATTCATGGCAGTGA
AGGTAACGTGCGGTATCACATTCACGTTTGGAGGGTTAGCGATCGATCCGGTTGGGGCTGGTGTTCTGAACGAAA
AAGGAAACACAATCGAGGGACTGTATTGCACGGGAGAAATGGTTGGAGGGCTCTTCTCTGGCAACTATCCCGGTG
GGAGCGGGCTGACTGCTGGGGCTGTTTTCGGGCGCAAGGCGGGCCAGAGTGCAGCGCAGCGAGTGAAGCGTACAT
AA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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