© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|102420 |
| Gene name | |
| Location | scaffold_07:1237479..1238133 |
| Strand | + |
| Gene length (bp) | 654 |
| Transcript length (bp) | 600 |
| Coding sequence length (bp) | 600 |
| Protein length (aa) | 200 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00011 | HSP20 | Hsp20/alpha crystallin family | 2.2E-04 | 62 | 150 |
| PF00011 | HSP20 | Hsp20/alpha crystallin family | 1.3E-08 | 153 | 198 |
| PF17886 | ArsA_HSP20 | HSP20-like domain found in ArsA | 1.5E-10 | 66 | 185 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P19752|HSP30_NEUCR | 30 kDa heat shock protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=hsp30 PE=3 SV=1 | 11 | 191 | 2.0E-10 |
| sp|O14368|HSP16_SCHPO | Heat shock protein 16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hsp16 PE=1 SV=1 | 57 | 199 | 5.0E-09 |
| sp|Q8MPA7|HSPG5_DICDI | Small heat shock protein hspG5 OS=Dictyostelium discoideum GN=hspG5 PE=2 SV=2 | 58 | 195 | 9.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|102420 MSIARQLFREFRPFFRMLDEPFYRRAPPGLLPSDAMHRLDRENLLADPFTGLNMMTSPAVDVTEQGDKYVLDADL PGVERENLQVRLGDGNQSITIEGKVTEKLSSGASEAGAQASGKSNNASEAEYTDASKSTSATKDNGATQISAERP YTRNMSFTRTVWLPRSVDPNNVTAKLQNGVLSVTLNKAAEQTGRVVEIK* |
| Coding | >Agabi119p4|102420 ATGTCTATTGCACGCCAGCTGTTTCGCGAATTCCGTCCCTTCTTTCGCATGTTAGACGAGCCTTTCTACAGGCGC GCTCCTCCCGGTCTACTTCCCTCCGACGCTATGCATCGGCTTGACCGCGAAAATCTGCTTGCAGACCCATTCACG GGTCTGAACATGATGACTTCTCCAGCGGTCGATGTGACGGAGCAGGGTGACAAATACGTCCTAGATGCCGACCTT CCCGGGGTCGAGAGAGAGAATCTCCAAGTTCGTCTTGGAGACGGAAATCAGAGTATCACAATCGAGGGAAAGGTC ACAGAAAAACTGTCTTCTGGAGCTTCGGAGGCAGGGGCTCAAGCAAGCGGCAAATCCAACAATGCCTCGGAAGCT GAGTATACTGATGCATCCAAATCGACCTCTGCGACAAAAGACAACGGTGCGACGCAGATTTCGGCGGAGCGTCCG TACACGAGGAATATGTCGTTTACACGGACTGTATGGCTACCGCGTTCGGTGGATCCGAATAATGTGACGGCAAAA TTGCAGAATGGAGTGTTGAGCGTTACGCTGAACAAGGCCGCAGAGCAGACAGGACGGGTGGTCGAGATTAAGTAG |
| Transcript | >Agabi119p4|102420 ATGTCTATTGCACGCCAGCTGTTTCGCGAATTCCGTCCCTTCTTTCGCATGTTAGACGAGCCTTTCTACAGGCGC GCTCCTCCCGGTCTACTTCCCTCCGACGCTATGCATCGGCTTGACCGCGAAAATCTGCTTGCAGACCCATTCACG GGTCTGAACATGATGACTTCTCCAGCGGTCGATGTGACGGAGCAGGGTGACAAATACGTCCTAGATGCCGACCTT CCCGGGGTCGAGAGAGAGAATCTCCAAGTTCGTCTTGGAGACGGAAATCAGAGTATCACAATCGAGGGAAAGGTC ACAGAAAAACTGTCTTCTGGAGCTTCGGAGGCAGGGGCTCAAGCAAGCGGCAAATCCAACAATGCCTCGGAAGCT GAGTATACTGATGCATCCAAATCGACCTCTGCGACAAAAGACAACGGTGCGACGCAGATTTCGGCGGAGCGTCCG TACACGAGGAATATGTCGTTTACACGGACTGTATGGCTACCGCGTTCGGTGGATCCGAATAATGTGACGGCAAAA TTGCAGAATGGAGTGTTGAGCGTTACGCTGAACAAGGCCGCAGAGCAGACAGGACGGGTGGTCGAGATTAAGTAG |
| Gene | >Agabi119p4|102420 ATGTCTATTGCACGCCAGCTGTTTCGCGAATTCCGTCCCTTCTTTCGCATGTTAGACGAGCCTTTCTACAGGCGC GCTCCTCCCGGTCTACTTCCCTCCGACGCTATGCATCGGCTTGACCGCGAAAATCTGCTTGCAGACCCATTCACG GGTCTGAACATGATGACTTCTCCAGCGGTCGATGTGACGGAGCAGGGTGACAAATACGTCCTAGATGCCGACCTT CCCGGGGTCGAGAGAGAGAATCTCCAAGTTCGTCTTGGAGACGGAAATCAGAGTATCACAATCGAGGGAAAGGTC ACAGAAAAACTGTCTTCTGGAGCTTCGGAGGCAGGGGCTCAAGCAAGCGGCAAATCCAACAATGCCTCGGAAGCT GAGTATACTGATGGTACGTATATCAGATTGAGTCTACCAATGTTGGAAGTTCATGACGAGATGCCAGCATCCAAA TCGACCTCTGCGACAAAAGACAACGGTGCGACGCAGATTTCGGCGGAGCGTCCGTACACGAGGAATATGTCGTTT ACACGGACTGTATGGCTACCGCGTTCGGTGGATCCGAATAATGTGACGGCAAAATTGCAGAATGGAGTGTTGAGC GTTACGCTGAACAAGGCCGCAGAGCAGACAGGACGGGTGGTCGAGATTAAGTAG |