Fungal Genomics

at Utrecht University

General Properties

Protein ID	Agabi119p4\|102310
Gene name
Location	scaffold_07:1207793..1209680
Strand	+
Gene length (bp)	1887
Transcript length (bp)	1359
Coding sequence length (bp)	1359
Protein length (aa)	453

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF17979	zf-CRD	Cysteine rich domain with multizinc binding regions	1.3E-12	203	344

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q5FWP4\|CHFR_XENLA	E3 ubiquitin-protein ligase CHFR OS=Xenopus laevis GN=chfr PE=1 SV=1	49	391	2.0E-07
sp\|A5WW08\|CHFR_DANRE	E3 ubiquitin-protein ligase CHFR OS=Danio rerio GN=chfr PE=2 SV=1	22	391	2.0E-07
sp\|Q6P256\|CHFR_XENTR	E3 ubiquitin-protein ligase CHFR OS=Xenopus tropicalis GN=chfr PE=2 SV=1	49	391	5.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 42	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Agabi119p4\|102310 MDQASSSLTRVKRRASQDAIVESSRKRLKEDVDDRDHVEALGDTTFMQELADELQCGCCAALVYKPVLVLPCQHF FCGSCCVLWIRNGGTNCPSCRSVTSIATPYRALQGTLDTFLRWAPHRARSERERQQADEIYSGNNLRIPGPREAS PEPNINQNTDFAQPCPHCSPGNPYGWVCPQPIPDPNMDPDHAWLLDEGDPPGHARCGNCEIMLALRAPTTSKCDM CSVSFCGINVQGRCVAASLPAQQPHGLGDIGDLIECSFIYDCFDGNNVEVEIMLDYLTAQRLTPKHIYREIIAHT QSQPRGFRTLIGRNIFSEIHGAVDTDPDIPRSRICRLCAAEVFFAGLKDWWVRERQKGFLEPNVANRKDCPHGEA CSHQKDFGHAREFNHIFMRNTNAPGSGPLPALVPLNAGPSVPNVAPETLPPALDVREGSITSAPATPDFRDAIDT FL*
Coding	>Agabi119p4\|102310 ATGGATCAAGCAAGCTCCTCGCTCACCCGCGTCAAGCGTCGAGCATCGCAGGACGCCATCGTTGAGAGTAGCAGG AAGAGACTAAAAGAGGATGTTGACGACCGGGACCACGTAGAAGCTCTAGGGGATACAACCTTCATGCAAGAATTG GCAGACGAGTTACAGTGCGGTTGTTGTGCTGCGTTAGTCTACAAACCAGTTCTTGTACTACCGTGCCAGCATTTC TTCTGTGGAAGTTGCTGCGTCCTTTGGATACGTAACGGGGGAACAAATTGTCCCTCATGTCGAAGTGTAACTTCG ATTGCGACCCCATACCGAGCATTGCAGGGAACCCTCGATACATTCCTCCGTTGGGCTCCACACCGAGCTCGGTCC GAACGAGAACGACAACAGGCTGACGAGATATACTCCGGCAACAATTTACGCATACCAGGGCCACGAGAAGCTTCC CCAGAGCCTAATATCAATCAAAACACTGATTTTGCTCAACCTTGCCCCCATTGCTCTCCCGGAAATCCCTATGGT TGGGTTTGCCCTCAGCCCATACCTGATCCGAACATGGATCCTGACCATGCTTGGCTTCTTGATGAGGGAGACCCC CCAGGACATGCGCGTTGTGGAAATTGCGAAATCATGCTGGCCCTTCGTGCTCCTACAACTTCTAAATGTGATATG TGTTCGGTTTCCTTCTGCGGAATAAACGTCCAAGGACGTTGTGTTGCTGCTTCGCTTCCTGCTCAACAGCCACAC GGTTTAGGGGACATTGGTGACCTCATCGAATGTTCCTTTATATACGACTGTTTCGACGGCAATAATGTGGAAGTA GAGATCATGTTAGATTATTTAACTGCGCAAAGGTTGACACCAAAACACATCTATCGCGAGATTATTGCGCATACG CAATCCCAACCCCGAGGCTTCCGAACACTTATAGGACGTAACATATTCAGTGAGATTCACGGTGCCGTCGACACT GACCCAGACATCCCTCGAAGTCGGATTTGTCGTTTGTGTGCTGCGGAGGTGTTCTTCGCGGGTCTCAAGGACTGG TGGGTCCGAGAACGGCAAAAAGGTTTCTTGGAACCGAATGTTGCCAATCGCAAAGATTGTCCTCATGGTGAGGCC TGTTCCCATCAAAAGGATTTTGGACACGCCCGTGAATTCAACCACATATTCATGAGAAACACCAATGCGCCAGGG AGCGGTCCCCTTCCAGCTCTTGTGCCCCTGAATGCCGGACCATCGGTACCAAACGTTGCCCCAGAGACTCTACCA CCTGCCTTGGATGTAAGGGAAGGTTCCATTACATCCGCACCTGCTACCCCAGATTTTCGAGATGCCATCGACACT TTCCTGTAA
Transcript	>Agabi119p4\|102310 ATGGATCAAGCAAGCTCCTCGCTCACCCGCGTCAAGCGTCGAGCATCGCAGGACGCCATCGTTGAGAGTAGCAGG AAGAGACTAAAAGAGGATGTTGACGACCGGGACCACGTAGAAGCTCTAGGGGATACAACCTTCATGCAAGAATTG GCAGACGAGTTACAGTGCGGTTGTTGTGCTGCGTTAGTCTACAAACCAGTTCTTGTACTACCGTGCCAGCATTTC TTCTGTGGAAGTTGCTGCGTCCTTTGGATACGTAACGGGGGAACAAATTGTCCCTCATGTCGAAGTGTAACTTCG ATTGCGACCCCATACCGAGCATTGCAGGGAACCCTCGATACATTCCTCCGTTGGGCTCCACACCGAGCTCGGTCC GAACGAGAACGACAACAGGCTGACGAGATATACTCCGGCAACAATTTACGCATACCAGGGCCACGAGAAGCTTCC CCAGAGCCTAATATCAATCAAAACACTGATTTTGCTCAACCTTGCCCCCATTGCTCTCCCGGAAATCCCTATGGT TGGGTTTGCCCTCAGCCCATACCTGATCCGAACATGGATCCTGACCATGCTTGGCTTCTTGATGAGGGAGACCCC CCAGGACATGCGCGTTGTGGAAATTGCGAAATCATGCTGGCCCTTCGTGCTCCTACAACTTCTAAATGTGATATG TGTTCGGTTTCCTTCTGCGGAATAAACGTCCAAGGACGTTGTGTTGCTGCTTCGCTTCCTGCTCAACAGCCACAC GGTTTAGGGGACATTGGTGACCTCATCGAATGTTCCTTTATATACGACTGTTTCGACGGCAATAATGTGGAAGTA GAGATCATGTTAGATTATTTAACTGCGCAAAGGTTGACACCAAAACACATCTATCGCGAGATTATTGCGCATACG CAATCCCAACCCCGAGGCTTCCGAACACTTATAGGACGTAACATATTCAGTGAGATTCACGGTGCCGTCGACACT GACCCAGACATCCCTCGAAGTCGGATTTGTCGTTTGTGTGCTGCGGAGGTGTTCTTCGCGGGTCTCAAGGACTGG TGGGTCCGAGAACGGCAAAAAGGTTTCTTGGAACCGAATGTTGCCAATCGCAAAGATTGTCCTCATGGTGAGGCC TGTTCCCATCAAAAGGATTTTGGACACGCCCGTGAATTCAACCACATATTCATGAGAAACACCAATGCGCCAGGG AGCGGTCCCCTTCCAGCTCTTGTGCCCCTGAATGCCGGACCATCGGTACCAAACGTTGCCCCAGAGACTCTACCA CCTGCCTTGGATGTAAGGGAAGGTTCCATTACATCCGCACCTGCTACCCCAGATTTTCGAGATGCCATCGACACT TTCCTGTAA
Gene	>Agabi119p4\|102310 ATGGATCAAGCAAGCTCCTCGCTCACCCGTCCGCCTTTAATGACCACCTCAGCTTCAGTATCATTATTGACTCCT CCACTCTCAGGCGTCAAGCGTCGAGCATCGCAGGACGCCATCGTTGAGAGTAGCAGGAAGAGACTAAAAGAGGAT GTTGACGACCGGGACCACGTAGAAGCTCTAGGGGATACAACCTTCATGCAAGAATTGGCAGACGAGTTACAGTGC GGTTGTTGTGCTGCGTTAGTCTACAAACCAGTTCTTGTACTACCGTGCCAGCATTTCTTCTGTGGAAGGTATGCC AATATCTATCGCCCCCGGGCAGCACGAGCCAGTCCCTTCATGACTGAATTACCTTCTGTGTAGTTGCTGCGTCCT TTGGATACGTGTAAGTGTTCCATTATCACAACTACTTTGCATTCGACCTGCGATCATCTGATTCAATGTTCTATC TTGTTACCTGCTCCGCGTGGCGACTCGCATTTATTGACTCTTCTCACTAGAACGGGGGAACAAATTGTCCCTCAT GTCGAAGTGTAACTTCGATTGCGACCCCATACCGAGCATTGCAGGGAACCCTCGATACATTCCTCCGTTGGGCTC CACACCGAGCTCGGTCCGAACGAGAACGACAACAGGCTGACGAGATATACTCCGGCAACAATTTACGCGTGTGTT TCGTCAACGCAGCGATTGTCTCACTTGTTTCTTATCTCGCGTTCTCTTTTAACGCAGATACCAGGGCCACGAGAA GCTTCCCCAGAGCCTAATATCAATCAAAACACTGATTTTGCTCAACCTTGCCCCCATTGCTCTCCCGGAAATCCC TATGGTTGGGTTTGCCCTCAGCCCATACCTGATCCGAACATGGATCCTGACCATGCTTGGCTTCTTGATGAGGGA GACCCCCCAGGACATGCGCGTTGTGGAAATTGGTGCGGTTTATCTTTACCCAATGATCCAGTGTCTTGATATAGA ATTGCCTAGCGAAATCATGCTGGCCCTTCGTGCTCCTACAACTTCTAAATGTGATATGTGTTCGGTTTCCTTCTG CGGAATAAACGTCCAAGGACGTTGTGTTGCTGCTTCGCTTCCTGCTCAACAGCCACACGGTTTAGGGGACATTGG TGACCTCATCGAATGTTCCTTTATATACGACTGTTTCGACGGCAATAATGTGGAAGTAGAGATCATGTTAGATTA TTTAACTGCGCAAAGGTTGACACCAAAACACATCTATCGCGAGGTAAACCATAATCTATGTCACGCATACTCATT TAAGTCTCAAAAAAAAATTATAGATTATTGCGCATACGCAATCCCAACCCCGAGGCTTCCGAACACTTATAGGAC GTAACATATTCAGTGAGATTCACGGTGCCGTCGACACTGACCCAGACATCCCTCGAAGTCGGATTTGTCGTTTGT GTGCTGCGGAGGTGTTCTTCGCGGGTCTCAAGGACTGGTGGGTCCGAGAACGGCAAAAAGGTTTCTTGGAACCGA ATGTTGCCAATCGCAAAGATTGTCCTCATGGTGAGGCCTGTTCCCATCAAAAGGATTTTGGTGTGTAGCCTATAC TTTGCCACCTTGCGAAATACTGATGATGAAATCACCTTCTCCACTCAGGACACGCCCGTGAATGTAAGTGCTTAC GACGCGCGATGCATCGGTTCACTAATGCGCAGTCCTTAAGTCAACCACATATTCATGAGAAACACCAATGCGCCA GGGAGCGGTCCCCTTCCAGCTCTTGTGCCCCTGAATGCCGGACCATCGGTACCAAACGTTGCCCCAGAGACTCTA CCACCTGCCTTGGATGTAAGGGAAGGTTCCATTACATCCGCACCTGCTACCCCAGATTTTCGAGATGCCATCGAC ACTTTCCTGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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