© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Agabi119p4|101910 |
| Gene name | |
| Location | scaffold_07:1105357..1108254 |
| Strand | + |
| Gene length (bp) | 2897 |
| Transcript length (bp) | 2481 |
| Coding sequence length (bp) | 2481 |
| Protein length (aa) | 827 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04676 | CwfJ_C_2 | Protein similar to CwfJ C-terminus 2 | 4.3E-36 | 707 | 820 |
| PF04677 | CwfJ_C_1 | Protein similar to CwfJ C-terminus 1 | 4.8E-32 | 575 | 698 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3LSS0|C19L2_DANRE | CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=2 SV=1 | 325 | 820 | 1.0E-66 |
| sp|Q09909|CWF19_SCHPO | Pre-mRNA-splicing factor cwf19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf19 PE=1 SV=1 | 237 | 824 | 4.0E-63 |
| sp|Q28C44|C19L2_XENTR | CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1 | 387 | 820 | 8.0E-63 |
| sp|Q2TBE0|C19L2_HUMAN | CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE=1 SV=4 | 329 | 820 | 3.0E-61 |
| sp|Q8BG79|C19L2_MOUSE | CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=1 SV=1 | 408 | 820 | 3.0E-59 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q3LSS0|C19L2_DANRE | CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=2 SV=1 | 325 | 820 | 1.0E-66 |
| sp|Q09909|CWF19_SCHPO | Pre-mRNA-splicing factor cwf19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf19 PE=1 SV=1 | 237 | 824 | 4.0E-63 |
| sp|Q28C44|C19L2_XENTR | CWF19-like protein 2 OS=Xenopus tropicalis GN=cwf19l2 PE=2 SV=1 | 387 | 820 | 8.0E-63 |
| sp|Q2TBE0|C19L2_HUMAN | CWF19-like protein 2 OS=Homo sapiens GN=CWF19L2 PE=1 SV=4 | 329 | 820 | 3.0E-61 |
| sp|Q8BG79|C19L2_MOUSE | CWF19-like protein 2 OS=Mus musculus GN=Cwf19l2 PE=1 SV=1 | 408 | 820 | 3.0E-59 |
| sp|Q9VXT5|C19L2_DROME | CWF19-like protein 2 homolog OS=Drosophila melanogaster GN=CG9213 PE=1 SV=2 | 402 | 820 | 1.0E-48 |
| sp|Q10946|C19L2_CAEEL | CWF19-like protein 2 homolog OS=Caenorhabditis elegans GN=B0361.2/B0361.1 PE=3 SV=2 | 391 | 820 | 2.0E-40 |
| sp|Q84WU9|C3H64_ARATH | Zinc finger CCCH domain-containing protein 64 OS=Arabidopsis thaliana GN=At5g56900 PE=2 SV=1 | 586 | 818 | 7.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|101910 MDSHEREQKHRSSRHEEKEKERPKHRSHGKDRDRDDRKHKKRRTHDDEHEGQERKHKHRKKEKGGKEVHLAVVDD DVNDEDMWVEKNIDMEGERVLTTDIPTAESLNIVSTAEDHPSDPSLPKVTAATSQLKRDEWMLLPPSIPAFPNAS SELQLPLQTNNETLTEGYGDVPPNKRTMSEGLDFFSSLGTEHKKKQPDKPDPDKPKVSYRELNPEIVSGKPTNSD EPPPPPKPNVPGGPGSPWRMMRLRKVYETAEEDNRPLEEVAMERFGSLALFEEAKEERRILDERGGKKADRDRER GRKNGQAEIGFGGEKKLMFTDIGGSGTSSRSSSFRRPGAMGESTPSTPSPPTGTAPVNRRLDSLRLPSQASSPLA QSHTPIPSVMTPPPPVASGSSSAGRPLSPSSLNKLQAKVLRAKLMGAPDAEKLEKEYDMEVKRTHGSQDESGVRT KVEAMPTLDARGRLYDVGHGGEDDRRPAGNKRKKEEKFETHDRKTGEIIRYNADDDTMTLGEMLRQEKFEAGMAD QKDLDAQFAKAIMGDTKFENDLEYMDDNAAKLGRQKMRSDAMKRQFAIHDYKRTQQVLATCPFCYGEDDSLPKAP IVAMGTRTYLSCTTFEELVKGHCLIVPIQHHLSMLEADDDTWDEVRNFMKCLMRMFAEDDKGVIFYETVISLKWQ KHTFVECVPLPWDQFDLIPGYFKESILTSEAEWSQHKKLIDFSSRPGGFRRAMVPNLPYFMVQFDYKGEKGYGHV IEGTGKDVDEELDEGEKGGGEFPRYFAGEIIGNLLDLEPRRWRRPRKVDFRSNKERVKSFKKEYEKFDWTGMIER Q* |
| Coding | >Agabi119p4|101910 ATGGACAGCCACGAACGAGAGCAAAAACATAGGTCTTCGAGACACGAAGAGAAAGAGAAGGAACGGCCTAAACAC CGGTCCCATGGCAAGGATAGGGATAGGGATGACCGCAAACACAAGAAACGGAGGACACATGACGATGAACATGAA GGACAAGAGCGGAAACATAAACACAGGAAAAAGGAAAAAGGCGGCAAGGAAGTCCATCTTGCCGTTGTGGATGAT GATGTCAATGATGAAGATATGTGGGTGGAGAAGAACATTGACATGGAGGGTGAACGAGTCCTCACGACAGACATT CCTACAGCAGAAAGCCTAAATATTGTTTCCACTGCAGAAGACCATCCATCAGATCCAAGTTTACCCAAAGTGACT GCAGCTACGTCGCAATTGAAGCGCGACGAGTGGATGTTACTTCCACCTAGCATACCTGCTTTTCCAAACGCATCT TCCGAACTCCAACTCCCACTACAGACGAACAACGAAACTTTAACTGAGGGTTACGGCGACGTCCCTCCAAATAAA CGAACAATGAGTGAAGGCCTTGATTTCTTTTCAAGTCTTGGTACCGAACATAAGAAAAAACAACCAGATAAGCCA GACCCCGACAAGCCCAAAGTAAGTTACCGCGAACTCAATCCAGAAATCGTATCTGGCAAACCAACAAACTCCGAC GAACCACCTCCACCACCCAAACCCAATGTCCCTGGCGGTCCCGGATCCCCCTGGCGTATGATGCGTCTCCGCAAA GTATATGAAACCGCGGAGGAAGACAATCGACCTCTGGAGGAAGTCGCCATGGAACGCTTCGGTTCTCTTGCTCTA TTCGAAGAAGCCAAAGAGGAGCGTCGGATATTGGATGAGAGGGGTGGAAAAAAAGCCGATCGCGACCGCGAGAGA GGGAGAAAAAATGGACAGGCGGAAATTGGATTTGGTGGGGAAAAGAAATTAATGTTCACTGATATAGGTGGAAGT GGCACTTCGAGTCGTAGCTCTTCGTTCCGCCGGCCTGGGGCTATGGGGGAAAGTACGCCTTCGACACCTTCACCA CCGACAGGTACCGCACCTGTCAATCGTCGTTTGGACTCTCTACGGTTGCCGTCGCAGGCCAGTTCACCGCTTGCA CAATCACATACCCCCATTCCATCAGTCATGACGCCACCTCCGCCCGTTGCGTCTGGGTCTAGTTCTGCTGGGCGG CCATTGTCACCTTCATCTTTGAACAAGCTTCAAGCAAAGGTGTTACGGGCAAAGCTTATGGGTGCTCCTGATGCG GAAAAGTTGGAAAAAGAGTATGACATGGAGGTTAAGAGGACTCATGGCAGTCAAGATGAAAGTGGTGTGCGGACG AAGGTAGAAGCTATGCCAACTTTGGATGCAAGGGGACGGTTGTATGACGTTGGTCATGGCGGAGAAGATGACCGA CGACCGGCAGGCAATAAGAGGAAGAAGGAAGAGAAATTTGAAACTCATGATCGTAAAACTGGCGAAATCATTCGT TATAATGCTGATGATGACACGATGACACTGGGCGAGATGCTACGACAAGAAAAATTCGAAGCTGGGATGGCTGAT CAAAAAGATTTGGATGCTCAGTTCGCGAAGGCCATTATGGGTGATACAAAGTTTGAGAATGACCTCGAATATATG GACGATAATGCAGCCAAGTTGGGTCGTCAGAAAATGCGTTCGGATGCAATGAAACGACAGTTCGCTATCCATGAT TATAAACGCACCCAACAGGTGCTTGCCACATGTCCATTCTGTTATGGGGAAGATGATTCGCTACCAAAAGCTCCG ATCGTTGCAATGGGCACGCGGACTTATCTCTCGTGCACAACCTTTGAAGAACTTGTTAAGGGACACTGCCTAATT GTTCCAATTCAACATCACCTTAGTATGCTAGAGGCTGATGATGATACCTGGGACGAAGTCAGGAACTTTATGAAA TGCCTGATGCGTATGTTTGCCGAGGACGATAAAGGCGTCATCTTCTACGAAACCGTTATTTCCTTGAAGTGGCAG AAACACACATTTGTGGAGTGTGTACCCTTGCCCTGGGACCAGTTCGATTTGATACCAGGCTACTTCAAGGAATCC ATCTTGACTTCAGAAGCTGAGTGGTCACAGCACAAGAAGCTGATTGACTTTTCTTCTCGCCCGGGAGGATTTCGG CGTGCCATGGTTCCGAACCTGCCCTATTTCATGGTGCAATTTGACTACAAGGGTGAGAAGGGTTATGGCCACGTT ATTGAAGGGACTGGCAAGGATGTGGATGAGGAGCTCGACGAAGGCGAGAAGGGAGGTGGCGAATTCCCAAGGTAC TTTGCTGGTGAAATTATTGGGAATCTGTTGGATTTGGAGCCGAGACGGTGGAGACGGCCAAGGAAGGTGGATTTC AGGAGCAACAAGGAGCGGGTGAAGTCGTTCAAGAAGGAGTACGAGAAGTTTGACTGGACTGGTATGATAGAGCGG CAGTGA |
| Transcript | >Agabi119p4|101910 ATGGACAGCCACGAACGAGAGCAAAAACATAGGTCTTCGAGACACGAAGAGAAAGAGAAGGAACGGCCTAAACAC CGGTCCCATGGCAAGGATAGGGATAGGGATGACCGCAAACACAAGAAACGGAGGACACATGACGATGAACATGAA GGACAAGAGCGGAAACATAAACACAGGAAAAAGGAAAAAGGCGGCAAGGAAGTCCATCTTGCCGTTGTGGATGAT GATGTCAATGATGAAGATATGTGGGTGGAGAAGAACATTGACATGGAGGGTGAACGAGTCCTCACGACAGACATT CCTACAGCAGAAAGCCTAAATATTGTTTCCACTGCAGAAGACCATCCATCAGATCCAAGTTTACCCAAAGTGACT GCAGCTACGTCGCAATTGAAGCGCGACGAGTGGATGTTACTTCCACCTAGCATACCTGCTTTTCCAAACGCATCT TCCGAACTCCAACTCCCACTACAGACGAACAACGAAACTTTAACTGAGGGTTACGGCGACGTCCCTCCAAATAAA CGAACAATGAGTGAAGGCCTTGATTTCTTTTCAAGTCTTGGTACCGAACATAAGAAAAAACAACCAGATAAGCCA GACCCCGACAAGCCCAAAGTAAGTTACCGCGAACTCAATCCAGAAATCGTATCTGGCAAACCAACAAACTCCGAC GAACCACCTCCACCACCCAAACCCAATGTCCCTGGCGGTCCCGGATCCCCCTGGCGTATGATGCGTCTCCGCAAA GTATATGAAACCGCGGAGGAAGACAATCGACCTCTGGAGGAAGTCGCCATGGAACGCTTCGGTTCTCTTGCTCTA TTCGAAGAAGCCAAAGAGGAGCGTCGGATATTGGATGAGAGGGGTGGAAAAAAAGCCGATCGCGACCGCGAGAGA GGGAGAAAAAATGGACAGGCGGAAATTGGATTTGGTGGGGAAAAGAAATTAATGTTCACTGATATAGGTGGAAGT GGCACTTCGAGTCGTAGCTCTTCGTTCCGCCGGCCTGGGGCTATGGGGGAAAGTACGCCTTCGACACCTTCACCA CCGACAGGTACCGCACCTGTCAATCGTCGTTTGGACTCTCTACGGTTGCCGTCGCAGGCCAGTTCACCGCTTGCA CAATCACATACCCCCATTCCATCAGTCATGACGCCACCTCCGCCCGTTGCGTCTGGGTCTAGTTCTGCTGGGCGG CCATTGTCACCTTCATCTTTGAACAAGCTTCAAGCAAAGGTGTTACGGGCAAAGCTTATGGGTGCTCCTGATGCG GAAAAGTTGGAAAAAGAGTATGACATGGAGGTTAAGAGGACTCATGGCAGTCAAGATGAAAGTGGTGTGCGGACG AAGGTAGAAGCTATGCCAACTTTGGATGCAAGGGGACGGTTGTATGACGTTGGTCATGGCGGAGAAGATGACCGA CGACCGGCAGGCAATAAGAGGAAGAAGGAAGAGAAATTTGAAACTCATGATCGTAAAACTGGCGAAATCATTCGT TATAATGCTGATGATGACACGATGACACTGGGCGAGATGCTACGACAAGAAAAATTCGAAGCTGGGATGGCTGAT CAAAAAGATTTGGATGCTCAGTTCGCGAAGGCCATTATGGGTGATACAAAGTTTGAGAATGACCTCGAATATATG GACGATAATGCAGCCAAGTTGGGTCGTCAGAAAATGCGTTCGGATGCAATGAAACGACAGTTCGCTATCCATGAT TATAAACGCACCCAACAGGTGCTTGCCACATGTCCATTCTGTTATGGGGAAGATGATTCGCTACCAAAAGCTCCG ATCGTTGCAATGGGCACGCGGACTTATCTCTCGTGCACAACCTTTGAAGAACTTGTTAAGGGACACTGCCTAATT GTTCCAATTCAACATCACCTTAGTATGCTAGAGGCTGATGATGATACCTGGGACGAAGTCAGGAACTTTATGAAA TGCCTGATGCGTATGTTTGCCGAGGACGATAAAGGCGTCATCTTCTACGAAACCGTTATTTCCTTGAAGTGGCAG AAACACACATTTGTGGAGTGTGTACCCTTGCCCTGGGACCAGTTCGATTTGATACCAGGCTACTTCAAGGAATCC ATCTTGACTTCAGAAGCTGAGTGGTCACAGCACAAGAAGCTGATTGACTTTTCTTCTCGCCCGGGAGGATTTCGG CGTGCCATGGTTCCGAACCTGCCCTATTTCATGGTGCAATTTGACTACAAGGGTGAGAAGGGTTATGGCCACGTT ATTGAAGGGACTGGCAAGGATGTGGATGAGGAGCTCGACGAAGGCGAGAAGGGAGGTGGCGAATTCCCAAGGTAC TTTGCTGGTGAAATTATTGGGAATCTGTTGGATTTGGAGCCGAGACGGTGGAGACGGCCAAGGAAGGTGGATTTC AGGAGCAACAAGGAGCGGGTGAAGTCGTTCAAGAAGGAGTACGAGAAGTTTGACTGGACTGGTATGATAGAGCGG CAGTGA |
| Gene | >Agabi119p4|101910 ATGGACAGCCACGAACGAGAGCAAAAACATAGGTCTTCGAGACACGAAGAGAAAGAGAAGGAACGGCCTAAACAC CGGTCCCATGGCAAGGATAGGGATAGGGATGACCGCAAACACAAGAAACGGAGGACACATGACGATGAACATGAA GGACAAGAGCGGAAACATAAACACAGGAAAAAGGAAAAAGGCGGCAAGGAAGTCCATCTTGCCGTTGTGGATGAT GATGTCAATGATGAAGATATGTGGGTGGAGAAGAACATTGACATGGAGGGTGAACGAGTGCGTATTCACATTTAC TATCCATCCATGTATTCTTCAACTGGTATCAAATAATAGGTCCTCACGACAGACATTCCTACAGCAGAAAGCCTA AATATTGTTTCCACTGCAGAAGACCATCCATCAGATCCAAGTTTACCCAAAGTGACTGCAGCTACGTCGCAATTG AAGCGCGACGAGTGGATGTTACTTCCACCTAGCATACCTGCTTTTCCAAACGCATCTTCCGAACTCCAACTCCCA CTACAGACGAACAACGAAACTTTAACTGAGGGTTACGGCGACGTCCCTCCAAATAAACGAACAATGAGTGAAGGC CTTGATTTCTTTTCAAGTCTTGGTACCGAACATAAGAAAAAACAACCAGATAAGCCAGACCCCGACAAGGTATCT CGCATTGTAATTCCTCGAGAAATATCCATGCTCATGCACCAACACCAGCCCAAAGTAAGTTACCGCGAACTCAAT CCAGAAATCGTATCTGGCAAACCAACAAACTCCGACGAACCACCTCCACCACCCAAACCCAATGTCCCTGGCGGT CCCGGATCCCCCTGGCGTATGATGCGTCTCCGCAAAGTATATGAAACCGCGGAGGAAGACAATCGACCTCTGGAG GAAGTCGCCATGGAACGCTTCGGTTCTCTTGCTCTATTCGAAGAAGCCAAAGAGGAGCGTCGGATATTGGATGAG AGGGGTGGAAAAAAAGCCGATCGCGACCGCGAGAGAGGGAGAAAAAATGGACAGGCGGAAATTGGATTTGGTGGG GAAAAGAAATTAATGTTCACTGATATAGGTGGAAGTGGCACTTCGAGTCGTAGCTCTTCGTTCCGCCGGCCTGGG GCTATGGGGGAAAGTACGCCTTCGACACCTTCACCACCGACAGGTACCGCACCTGTCAATCGTCGTTTGGACTCT CTACGGTTGCCGTCGCAGGCCAGTTCACCGCTTGCACAATCACATACCCCCATTCCATCAGTCATGACGCCACCT CCGCCCGTTGCGTCTGGGTCTAGTTCTGCTGGGCGGCCATTGTCACCTTCATCTTTGAACAAGCTTCAAGCAAAG GTGTTACGGGCAAAGCTTATGGGTGCTCCTGATGCGGAAAAGTTGGAAAAAGAGTATGACATGGAGGTTAAGAGG ACTCATGGCAGTCAAGATGAAAGTGGTGTGCGGACGAAGGTAGAAGCTATGCCAACTTTGGATGCAAGGGGACGG TTGTATGACGTTGGTCATGGCGGAGAAGATGACCGACGACCGGCAGGCAATAAGAGGAAGAAGGAAGAGAAAGTG AGTAGTCTGCAAGGTGCTAAATCTCACAGCCTATACTAATATCGTATTAGTTTGAAACTCATGATCGTAAAACTG GCGAAATCATTCGTTATAATGCTGATGATGACACGATGACACTGGGCGAGATGCTACGACAAGAAAAATTCGAAG CTGGGATGGCTGATCAAAAAGATTTGGATGCTCAGTTCGCGAAGGCCATTATGGGTGATACAAAGTTTGAGGTAT GTAGGAGTTTGATTCCCCAAATTCCTGCTCACTGAAGATGTCATAGAATGACCTCGAATATATGGACGATAATGC AGCCAAGTTGGGTCGTCAGAAAATGCGTTCGGATGCAATGAAACGACAGTTCGCTATCCATGGTTTGGCACTTCA CATTGATAATGAACAGGATTATGCTTACGCCGCTCTGTGCCAGATTATAAACGCACCCAACAGGTGCTTGCCACA TGTCCATTCTGTTATGGGGAAGATGATTCGCTACCAAAAGCTCCGATCGTTGCAATGGGCACGCGGACTTATCTC TCGTGCACAACCTTTGAAGAACTTGTTAAGGGACACTGCCTAATTGTTCCAATTCAACATCACCTTAGTATGCTA GAGGCTGATGATGATACCTGGGACGAAGTCAGGGTGAGTAGGAGGCAACTTGATAAGCCTTGTGCTGGCTGACTG GCTTTCAGAACTTTATGAAATGCCTGATGCGTATGTTTGCCGAGGACGATAAAGGCGTCATCTTCTACGAAACCG TTATTTCCTTGAAGTGGCAGAAACACACATTTGTGGAGTGTGTACCCTTGCCCTGGGACCAGTTCGATTTGATAC CAGGCTACTTCAAGGTGCATTGCTTACTAGATGCTACACCTTTGACGCTCATGTGATTTTGTAGGAATCCATCTT GACTTCAGAAGCTGAGTGGTCACAGCACAAGAAGCTGATTGACTTTTCTTCTCGCCCGGGAGGATTTCGGCGTGC CATGGTTCCGAACCTGCCCTATTTCATGGTGCAATTTGACTACAAGGGTGAGAAGGGTTATGGCCACGTTATTGA AGGGACTGGCAAGGATGTGGATGAGGAGCTCGACGAAGGCGAGAAGGGAGGTGGCGAATTCCCAAGGTGTGTTGA ACTATTTGCCAAGCGAGAATATCTAACCTTGAAATAGGTACTTTGCTGGTGAAATTATTGGGAATCTGTTGGATT TGGAGCCGAGACGGTGGAGACGGCCAAGGAAGGTGGATTTCAGGAGCAACAAGGAGCGGGTGAAGTCGTTCAAGA AGGAGTACGAGAAGTTTGACTGGACTGGTATGATAGAGCGGCAGTGA |