© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Agabi119p4|100580 |
| Gene name | |
| Location | scaffold_07:829038..831634 |
| Strand | + |
| Gene length (bp) | 2596 |
| Transcript length (bp) | 1674 |
| Coding sequence length (bp) | 1674 |
| Protein length (aa) | 558 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | 6.1E-04 | 64 | 99 |
| PF00400 | WD40 | WD domain, G-beta repeat | 2.1E-01 | 107 | 140 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q96JK2|DCAF5_HUMAN | DDB1- and CUL4-associated factor 5 OS=Homo sapiens GN=DCAF5 PE=1 SV=2 | 26 | 461 | 3.0E-33 |
| sp|Q80T85|DCAF5_MOUSE | DDB1- and CUL4-associated factor 5 OS=Mus musculus GN=Dcaf5 PE=1 SV=2 | 26 | 461 | 1.0E-32 |
| sp|Q5R9B8|DCAF6_PONAB | DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2 | 56 | 307 | 1.0E-10 |
| sp|Q58WW2|DCAF6_HUMAN | DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1 | 56 | 307 | 1.0E-10 |
| sp|Q9DC22|DCAF6_MOUSE | DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1 | 56 | 307 | 2.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q96JK2|DCAF5_HUMAN | DDB1- and CUL4-associated factor 5 OS=Homo sapiens GN=DCAF5 PE=1 SV=2 | 26 | 461 | 3.0E-33 |
| sp|Q80T85|DCAF5_MOUSE | DDB1- and CUL4-associated factor 5 OS=Mus musculus GN=Dcaf5 PE=1 SV=2 | 26 | 461 | 1.0E-32 |
| sp|Q5R9B8|DCAF6_PONAB | DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2 | 56 | 307 | 1.0E-10 |
| sp|Q58WW2|DCAF6_HUMAN | DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1 | 56 | 307 | 1.0E-10 |
| sp|Q9DC22|DCAF6_MOUSE | DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1 | 56 | 307 | 2.0E-10 |
| sp|Q8N7N5|DCAF8_MOUSE | DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1 | 55 | 366 | 2.0E-10 |
| sp|Q5TAQ9|DCAF8_HUMAN | DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1 | 55 | 366 | 2.0E-10 |
| sp|Q5U2M6|DCAF8_RAT | DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=1 SV=1 | 55 | 366 | 2.0E-10 |
| sp|Q5R448|DCAF8_PONAB | DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1 | 55 | 366 | 2.0E-10 |
| sp|Q6NRH1|DCAF8_XENLA | DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2 SV=1 | 56 | 366 | 7.0E-10 |
| sp|Q28I90|DCAF8_XENTR | DDB1- and CUL4-associated factor 8 OS=Xenopus tropicalis GN=dcaf8 PE=2 SV=1 | 56 | 366 | 5.0E-09 |
| sp|P0C7V8|DC8L2_HUMAN | DDB1- and CUL4-associated factor 8-like protein 2 OS=Homo sapiens GN=DCAF8L2 PE=2 SV=2 | 56 | 366 | 3.0E-08 |
| sp|O94527|IQW1_SCHPO | WD repeat protein iqw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iqw1 PE=1 SV=1 | 53 | 200 | 2.0E-07 |
| sp|B4QHG6|LIS1_DROSI | Lissencephaly-1 homolog OS=Drosophila simulans GN=Lis-1 PE=3 SV=1 | 62 | 193 | 8.0E-07 |
| sp|B4HSL3|LIS1_DROSE | Lissencephaly-1 homolog OS=Drosophila sechellia GN=Lis-1 PE=3 SV=1 | 62 | 193 | 8.0E-07 |
| sp|Q7KNS3|LIS1_DROME | Lissencephaly-1 homolog OS=Drosophila melanogaster GN=Lis-1 PE=1 SV=2 | 62 | 193 | 8.0E-07 |
| sp|B4P6P9|LIS1_DROYA | Lissencephaly-1 homolog OS=Drosophila yakuba GN=Lis-1 PE=3 SV=1 | 62 | 193 | 9.0E-07 |
| sp|B3NPW0|LIS1_DROER | Lissencephaly-1 homolog OS=Drosophila erecta GN=Lis-1 PE=3 SV=1 | 62 | 193 | 9.0E-07 |
| sp|Q99J09|MEP50_MOUSE | Methylosome protein 50 OS=Mus musculus GN=Wdr77 PE=1 SV=1 | 167 | 252 | 1.0E-06 |
| sp|D3TLL6|LIS1_GLOMM | Lissencephaly-1 homolog OS=Glossina morsitans morsitans PE=2 SV=1 | 62 | 146 | 2.0E-06 |
| sp|P49695|PKWA_THECU | Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | 65 | 283 | 3.0E-06 |
| sp|A6NGE4|DC8L1_HUMAN | DDB1- and CUL4-associated factor 8-like protein 1 OS=Homo sapiens GN=DCAF8L1 PE=2 SV=1 | 36 | 366 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Agabi119p4|100580 MIPTSSNDIHAHLPRIMHANRSRHSSLRGIHDHASLTASLQHSINRSRTDVLDSIFSEGFPYSRSLNAHQSCINA LAFSNGEGQFLASGGDDLKILLWDFYQEDVREPIGSFIGPRSNILHLTFSPSNRYLFSGGIDDVIFRYDVSYLGS SRAQISKRTPDATCTFHDDTIRGITCRPNQDEVYLSGSEDGRIIRHDEREASSPRAQDTLRLESEVTGLQYHPQM DYMFLTSDQNGSVCLRDERMAFGPLSSRSNNGVVQEYNTKLTRPNHDYLSNPETSSIAFDRDGSRFAVTMLHWYP TIYSISDPNPLAICTGKNTPDGTPIPAGERTYSNSCTMKHGSFGGPGLEIDEFYAAGSDDFRGYIWRLPPDSELA IQRQEISPGNWQKQEYANETGFAAGARENIYIPTEISTPLCRLTGHDSIVNTVVFHPHFLHVMTSGVERRMLLHS PTPSSPCAQDLPRSPTHVRQLDTNGTPDRFNFYQALVGAFTTVGESEAAADMSERRTISMFDHIWREEGDVDVFI VRPWKHEIPEDNSSDEDEDTESEDDAMDILVI* |
| Coding | >Agabi119p4|100580 ATGATCCCGACGTCATCCAACGACATCCATGCTCATTTACCGCGTATAATGCATGCAAATCGTTCTCGACATTCA TCGCTACGCGGAATTCACGACCATGCGTCTTTAACCGCTAGTCTTCAACATTCTATCAATAGGTCTAGAACCGAC GTTCTGGACTCCATATTTTCAGAGGGATTCCCTTACTCAAGAAGTTTGAATGCTCACCAATCATGTATAAATGCA CTCGCGTTCTCAAATGGAGAGGGTCAATTCTTAGCTAGCGGAGGTGATGATCTGAAGATCCTTTTATGGGACTTT TACCAAGAGGATGTTCGAGAACCCATAGGCTCATTCATCGGTCCTCGCAGCAACATTCTTCACCTGACATTTTCG CCTTCAAATCGTTACTTGTTCTCAGGTGGTATAGATGACGTTATCTTTCGGTACGATGTCTCTTACTTAGGGTCA TCTCGCGCGCAAATATCCAAGCGGACTCCTGATGCAACGTGTACATTTCATGATGATACTATTCGAGGAATAACT TGCCGGCCAAACCAAGATGAAGTCTATCTCAGCGGAAGTGAAGATGGTAGGATTATCCGCCACGATGAACGGGAG GCTAGTTCACCACGAGCTCAAGATACCCTTCGACTCGAGTCCGAGGTCACTGGCTTACAGTACCATCCGCAGATG GATTACATGTTCTTGACGAGTGATCAAAACGGCTCTGTTTGCCTTCGTGATGAAAGGATGGCGTTTGGGCCTCTT TCTAGCAGATCAAATAATGGTGTGGTACAAGAGTATAATACGAAGTTGACAAGACCGAACCACGACTATCTAAGC AACCCCGAGACGAGTAGTATCGCATTTGATCGTGATGGTTCTCGGTTTGCTGTCACCATGCTGCACTGGTATCCT ACCATTTACTCAATCTCCGACCCCAACCCACTGGCCATTTGCACCGGAAAGAACACGCCAGATGGGACTCCGATT CCTGCGGGAGAACGTACCTATTCTAATTCTTGCACCATGAAGCACGGGTCTTTTGGGGGCCCGGGACTCGAAATA GATGAGTTCTATGCCGCTGGCTCAGACGATTTTCGGGGATACATTTGGAGACTGCCCCCCGATTCAGAGCTTGCA ATTCAGAGGCAAGAAATCTCCCCTGGTAACTGGCAAAAACAGGAGTATGCAAACGAAACGGGTTTCGCCGCTGGA GCTAGGGAAAATATTTATATACCGACTGAGATATCAACTCCCCTGTGCCGACTGACAGGGCATGATTCGATCGTG AATACTGTGGTATTTCACCCCCATTTTCTCCATGTCATGACGTCGGGTGTAGAGAGACGAATGCTTTTACACAGT CCGACTCCATCGTCTCCATGCGCACAGGATCTTCCGCGCTCGCCAACTCATGTCAGACAATTAGATACAAACGGT ACACCCGACCGCTTCAACTTTTACCAGGCGTTAGTAGGTGCCTTTACGACGGTTGGAGAGTCTGAAGCTGCAGCA GACATGTCGGAGCGCAGAACCATCAGCATGTTCGATCATATATGGAGAGAAGAAGGAGACGTCGATGTTTTCATT GTTCGTCCATGGAAACATGAAATTCCTGAAGATAACTCGTCAGACGAAGACGAAGACACGGAGTCAGAGGATGAC GCCATGGATATATTGGTAATATAG |
| Transcript | >Agabi119p4|100580 ATGATCCCGACGTCATCCAACGACATCCATGCTCATTTACCGCGTATAATGCATGCAAATCGTTCTCGACATTCA TCGCTACGCGGAATTCACGACCATGCGTCTTTAACCGCTAGTCTTCAACATTCTATCAATAGGTCTAGAACCGAC GTTCTGGACTCCATATTTTCAGAGGGATTCCCTTACTCAAGAAGTTTGAATGCTCACCAATCATGTATAAATGCA CTCGCGTTCTCAAATGGAGAGGGTCAATTCTTAGCTAGCGGAGGTGATGATCTGAAGATCCTTTTATGGGACTTT TACCAAGAGGATGTTCGAGAACCCATAGGCTCATTCATCGGTCCTCGCAGCAACATTCTTCACCTGACATTTTCG CCTTCAAATCGTTACTTGTTCTCAGGTGGTATAGATGACGTTATCTTTCGGTACGATGTCTCTTACTTAGGGTCA TCTCGCGCGCAAATATCCAAGCGGACTCCTGATGCAACGTGTACATTTCATGATGATACTATTCGAGGAATAACT TGCCGGCCAAACCAAGATGAAGTCTATCTCAGCGGAAGTGAAGATGGTAGGATTATCCGCCACGATGAACGGGAG GCTAGTTCACCACGAGCTCAAGATACCCTTCGACTCGAGTCCGAGGTCACTGGCTTACAGTACCATCCGCAGATG GATTACATGTTCTTGACGAGTGATCAAAACGGCTCTGTTTGCCTTCGTGATGAAAGGATGGCGTTTGGGCCTCTT TCTAGCAGATCAAATAATGGTGTGGTACAAGAGTATAATACGAAGTTGACAAGACCGAACCACGACTATCTAAGC AACCCCGAGACGAGTAGTATCGCATTTGATCGTGATGGTTCTCGGTTTGCTGTCACCATGCTGCACTGGTATCCT ACCATTTACTCAATCTCCGACCCCAACCCACTGGCCATTTGCACCGGAAAGAACACGCCAGATGGGACTCCGATT CCTGCGGGAGAACGTACCTATTCTAATTCTTGCACCATGAAGCACGGGTCTTTTGGGGGCCCGGGACTCGAAATA GATGAGTTCTATGCCGCTGGCTCAGACGATTTTCGGGGATACATTTGGAGACTGCCCCCCGATTCAGAGCTTGCA ATTCAGAGGCAAGAAATCTCCCCTGGTAACTGGCAAAAACAGGAGTATGCAAACGAAACGGGTTTCGCCGCTGGA GCTAGGGAAAATATTTATATACCGACTGAGATATCAACTCCCCTGTGCCGACTGACAGGGCATGATTCGATCGTG AATACTGTGGTATTTCACCCCCATTTTCTCCATGTCATGACGTCGGGTGTAGAGAGACGAATGCTTTTACACAGT CCGACTCCATCGTCTCCATGCGCACAGGATCTTCCGCGCTCGCCAACTCATGTCAGACAATTAGATACAAACGGT ACACCCGACCGCTTCAACTTTTACCAGGCGTTAGTAGGTGCCTTTACGACGGTTGGAGAGTCTGAAGCTGCAGCA GACATGTCGGAGCGCAGAACCATCAGCATGTTCGATCATATATGGAGAGAAGAAGGAGACGTCGATGTTTTCATT GTTCGTCCATGGAAACATGAAATTCCTGAAGATAACTCGTCAGACGAAGACGAAGACACGGAGTCAGAGGATGAC GCCATGGATATATTGGTAATATAG |
| Gene | >Agabi119p4|100580 ATGATCCCGACGTCATCCAACGACATCCATGCTCATTTACCGCGTATAATGCATGCAAATCGTTCTCGACATTCA TCGCTACGCGGAATTCACGACCATGCGTCTTTAACCGCTAGTCTTCAACATTCTATCAATAGGTCTAGAACCGAC GTTCTGGACTCCATATTTTCAGAGGGATTCCCTTACTCAAGGTAAGTTGACCGGATCCTGCGCTGACCCTCGTTG GACCGGTTACTACCCTTTCAGTGTGGGGTTTGTATCTCCGTGTGTTGGATTAGGCATTGTCTGTCGCGTGGTTCG GATTTTGGGTGCCTGTAAACGAGACCGCAGTTCATAACTCGAGCATCATGATTACATTATTATCTTGGACGACGA ACGTCGATTCTTATTCTTCTCTCTTCTTTCTTTATACGCAGAAGTTTGAATGCTCACCAATCATGTATAAATGCA CTCGCGTTCTCAAATGGAGAGGGTCAATTCTTAGCTAGCGGAGGTGATGGTAAGTCCAGAGTCGTTCTCCCCGAT AGAGACGGACTATGTTGATGAATTATTGTTGTTCGCTCTATAGATCTGAAGATCCTTTTATGGGACTTTTACCAA GAGGATGTTCGAGAACCCATAGGCTCATTCATCGGTCCTCGCGTACGTCTCTATCTATAAATAAATGAGAGTAGT TCCAACATTTTTTTCGCAACAGAGCAACATTCTTCACCTGACATTTTCGCCTTCAAATCGTTACTTGTTCTCGTA AGTCAGGTCAAGTCAGGCGACATGTATATATTCTGTGCTAATCATTACTACTCTTTTGGATTAGAGGTGGTATAG ATGACGTTATCTTTCGGTACGATGTCTCTTACTTAGGGTCATCTCGCGCGCAAATATCCAAGCGGACTCCTGATG CAACGTGTACATTTCATGATGTCAGTGTATTATATACTTAAATTATCGGACTCTCTTCATTTTTAACCTTGCTTT GCAGGATACTATTCGAGGAATAACTTGCCGGCCAAACCAAGATGAAGTCTATCTCAGCGGAAGGTAATGCTGGAA ATGGTATTTTAGGTCCAGAACGTTATCGATGAGGATAATATAGTGAAGATGGTAGGATTATCCGCCACGATGAAC GGGAGGCTAGTTCACCACGAGCTCAAGATACCCTTCGACTCGAGTCCGAGGTCACTGGCTTACAGTACCATCCGC AGATGGATTACATGTTCTTGACGAGTGATCAAAACGGCTCTGTTTGCCTTCGTGATGAAAGGATGGCGTTTGGGC CTCTTTCTAGCAGATCAAATAATGGTGTGGTACAAGAGGTCAGTTTTTTGTATCTTGATATATCTAGGATTCTAT ATTTGATCACCTAATACTACATAGTATAATACGAAGTTGACAAGACCGAACCACGACTATCTAAGCAACCCCGAG ACGAGTAGTATCGCATTTGATCGTGATGGTAGGTGCAATGGTTGATACCGCGGATATAGTACTGATGAGCTTGGA AGGTTCTCGGTTTGCTGTCACCATGCTGGTGCGCCGAGATTTAGTCTGAATCTACCCAGTGTCTGAATTTACTCA TGTAGCACTGGTATCCTACCATTTACTCAATCTCCGACCCCAACCCACTGGCCATTTGCACCGGAAAGAACACGC CAGATGGGACTCCGATTCCTGCGGGAGAACGTACCTATTCTAATTCTTGCACCATGAAGGTATATAAGTCTTCAA AAAAAGGGTGCTCCGAGACTCGTTTCAATTGACGCCACAATAAATAGCACGGGTCTTTTGGGGGCCCGGGACTCG AAATAGATGAGTTCTATGCCGCTGGCTCAGACGATTTTCGGGGATACATTTGGAGACTGCCCCCCGATTCAGAGC TTGCAATTCAGAGGCAAGAAATCTCCCCTGGTAACTGGCAAAAACAGGAGTATGCAAACGAAACGGGTGCGTTGA CCGGGCAATCTTCCCTATCTCTCCGATTCAACTCCTAATCAGAAATCTCCAGGTTTCGCCGCTGGAGCTAGGGAA AATATTTATATACCGACTGAGATATCAACTCCCCTGTGCCGACTGACAGGTGGCATTTATAGTATTTTTGCGCTA CCAAACGTGATGGCTGAAACCAGTGTAGGGCATGATTCGATCGTGAATACTGTGGTATTTCACCCCCATTTTCTC CATGTCATGACGTCGGGTGTAGAGAGACGAATGCTTTTACACAGTCCGACTCCATCGTCTCCATGCGCACAGGAT CTTCCGCGCTCGCCAACTCATGTCAGACAATTAGATACAAACGGTACACCCGACCGCTTCAACTTTTACCAGGCG TTAGTAGGTGCCTTTACGACGGTTGGAGAGTCTGAAGCTGCAGCAGACATGTCGGAGCGCAGAACCATCAGCATG TTCGATCAGTAAGTTTCCTTCGCTTGCTTTGGGGGCTTTTGCAGCTGAACCTATCAATAGTATATGGAGAGAAGA AGGAGACGTCGATGTTTTCATTGTTCGTCCATGGAAACATGAAATTCCTGAAGATAACTCGTCAGACGAAGACGA AGACACGGAGTCAGAGGATGACGCCATGGATATATTGGTAATATAG |